prot_P-wetherbeei_contig5185.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig5185.1.1
Unique Name	prot_P-wetherbeei_contig5185.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	179

Homology

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.410e-45
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRG 93
            LPLSLL+TAQ HPMLVELKNGDTYNGRL++CD WMNIK+RDVIWTSRDG+RFWKLPE+YVRG SIKY+T+P+EV++MV EE+  + + +  G
Sbjct:    2 LPLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.880e-44
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAAR 86
            LPLSLLKTAQGHPMLVELKNGDTYNGRL  CD WMNI +RDVI TSRDG+RFWK+PE YVRGNSIKY+ VPEEVIDMV EED  R
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.050e-43
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEED 83
            LPLSLL+TAQGHPMLVELKNGDTYNGRL  CD+WMNI +R+VI TSRDG+RFWKLPE Y+RGNSIKY+ +PE+VID+VQEED
Sbjct:   15 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEED 96

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.470e-43
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEED 83
            LPLSLL+TAQGHPMLVELKNGDTYNGRL  CD+WMNI +R+VI TSRDG+RFWKLPE Y+RGNSIKY+ +PE+VID+VQEED
Sbjct:   16 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEED 97

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.600e-42
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAAR-AQASTRG 93
            LPLSLLKTAQGHPMLVELKNGDTYNGRL  CD+WMNI +R+VI TSRDG+RFW+LPE Y+RGNSIKY+ +P+EVIDMV EE   +  + +TRG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRG 94

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 7.770e-42
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRG 93
            LPLSLLKTAQG PMLVELKNGDTYNGRL+ CD+WMNIK++DVI+TSRD ++F K+ E+YVRGNSIKYVT+PEEV+DMVQEED ++ + +  G
Sbjct:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGG 93

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: H3G5G4_PHYRM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G4_PHYRM)

HSP 1 Score: 143 bits (360), Expect = 6.050e-41
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAAR 86
            LPLSLLKTAQGHPMLVELKNGDTYNG L  CD WMN+ +R+VI TS+DG+RFWK+PE Y+RGN+IKY+ VP E++DMV EED  R
Sbjct:    1 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDLNR 85

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A6A3LNI3_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.430e-41
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEED-AARAQASTRG 93
            LPLSLLKTAQGHPMLVELKNGDTYNG L  CD WMN+ +R+VI TS+DG+RFWK+PE Y+RGN+IKY+ VP E++DMV EED + R + + RG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQANRG 94

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: C3ZIA6_BRAFL (U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZIA6_BRAFL)

HSP 1 Score: 142 bits (359), Expect = 1.100e-40
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRG 93
            LPLSLLKTAQ HPMLVELKNG+TYNG LE CD WMNIK+RDVI TSRDG+RFW++PE Y+RG++IKY+ +P+EVIDMV+E+  ++ +   +G
Sbjct:    2 LPLSLLKTAQNHPMLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYIRGSTIKYLRIPDEVIDMVKEDIVSKQRTKQQG 93

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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S0PUU0_9EUKA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PUU0_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 1.490e-40
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0

Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRGXXXXXXGPRGG 104
            LPLSLL+TAQGHPMLVELKNG+TYNG L  CD WMNI +R+VI TSRDG+RFW+LPE+ +RGN+IKY+ +PEEVIDMV EED ++++ +  G      G RGG
Sbjct:    2 LPLSLLRTAQGHPMLVELKNGETYNGHLVSCDNWMNISLREVICTSRDGDRFWRLPEVIIRGNNIKYLRIPEEVIDMVPEEDLSKSKVA--GGKGDSRGGRGG 102

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836C9X5_9STRA	3.410e-45	72.83	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T...	[more]
W7TE23_9STRA	1.880e-44	83.53	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N...	[more]
A0A7S2FS84_9STRA	3.050e-43	80.49	U6 snRNA-associated Sm-like protein LSm4 (Fragment...	[more]
A0A7S2E5C6_9STRA	5.470e-43	80.49	U6 snRNA-associated Sm-like protein LSm4 (Fragment...	[more]
A0A7S2UV99_9STRA	1.600e-42	73.12	U6 snRNA-associated Sm-like protein LSm4 (Fragment...	[more]
D7G8J7_ECTSI	7.770e-42	72.83	U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E...	[more]
H3G5G4_PHYRM	6.050e-41	72.94	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P...	[more]
A0A6A3LNI3_9STRA	6.430e-41	68.82	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P...	[more]
C3ZIA6_BRAFL	1.100e-40	67.39	U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=B...	[more]
A0A7S0PUU0_9EUKA	1.490e-40	65.05	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..71 e-value: 1.8E-17 score: 74.0
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..70 e-value: 1.3E-15 score: 56.8
None	No IPR available	GENE3D	2.30.30.100		coord: 1..83 e-value: 3.2E-31 score: 108.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..178
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 2..133
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 2..133
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 2..77 e-value: 2.03029E-50 score: 155.041
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 3..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5185	contig	P-wetherbeei_contig5185:390..1464 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5185.1.1	mRNA_P-wetherbeei_contig5185.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig5185 390..1464 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig5185.1.1 ID=prot_P-wetherbeei_contig5185.1.1|Name=mRNA_P-wetherbeei_contig5185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
QLPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDG
ERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRGRGRGRGG
PRGGGNDRGRGGSRGGGPGGRGPQPGRGADRGGRSGGGARGGRGGGRMGA
GGRGRGDGGSRVDAGRGRGGGGGGGGPA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR027141	LSm4/Sm_D1/D3
IPR034101	Lsm4
IPR010920	LSM_dom_sf