mRNA_P-wetherbeei_contig51811.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51811.1.1
Unique NamemRNA_P-wetherbeei_contig51811.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: A0A127EYQ1_9HYPH (Uncharacterized protein n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EYQ1_9HYPH)

HSP 1 Score: 223 bits (567), Expect = 3.370e-68
Identity = 110/142 (77.46%), Postives = 129/142 (90.85%), Query Frame = 1
Query:   52 MICTPFFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            M+C PF+IMLGLM++EA+L+A TT+LVI  GRDVA G F+IGDL+ ILA++S +YIVGASSW++AER G+LAYGRY+LRFARDNR +TKLLGDKDARERVEPFLTGETF VYFHL+YEIEGDLRILLAL+LN IVLGTQID 
Sbjct:    1 MLCGPFYIMLGLMTVEASLHAVTTFLVIEAGRDVARGHFVIGDLLTILASESAAYIVGASSWIFAERTGFLAYGRYVLRFARDNREKTKLLGDKDARERVEPFLTGETFYVYFHLLYEIEGDLRILLALILNAIVLGTQIDA 142          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: A0A1H0VSC2_9BURK (ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain n=1 Tax=Rhodoferax sp. OV413 TaxID=1855285 RepID=A0A1H0VSC2_9BURK)

HSP 1 Score: 168 bits (425), Expect = 5.840e-47
Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   10 STRIAISPFQ---LAKLMICTPFFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            S+R A+ P++     + M+C P F ML  +  EAAL ATTT+L+I   RDV +  F++ D  WI+  QS SY++GASSW++AERAG+ A+GRYMLRFARDNRH+  LL DK  RE+VEPFLT E F ++F L+YE+E DL++L  L+ N  VLG  ID 
Sbjct:    9 SSRPALPPYRNRDFLRFMLCPPLFWMLLFLVAEAALAATTTWLIIDASRDVVDKVFLVSDFAWIVGVQSASYVLGASSWIFAERAGFGAFGRYMLRFARDNRHQAALLADKAQREQVEPFLTNEAFHIFFELVYELEADLKLLFGLLFNAAVLGVAIDA 167          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: UPI001BCED3CF (hypothetical protein n=1 Tax=Variovorax sp. PCZ-1 TaxID=2835533 RepID=UPI001BCED3CF)

HSP 1 Score: 167 bits (422), Expect = 1.610e-46
Identity = 85/138 (61.59%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   64 PFFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            PF+ ML L+ IEA L A TT L+I  G DV++  F+I D  WI+AAQS SYIVGASSW++AERAG+ AYGRYMLRFARDNR    LLGD+  RE VEPFLT ETF + F LIYE+E DL++   L+ N IVLG  ID 
Sbjct:   25 PFYWMLALLIIEAGLAAATTALIIQAGHDVSQQEFLISDFAWIVAAQSASYIVGASSWIFAERAGFGAYGRYMLRFARDNRATAALLGDRQQREHVEPFLTNETFHILFELIYELEADLKLFFGLLFNAIVLGFAIDA 162          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: J5PP17_9RHOB (Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J5PP17_9RHOB)

HSP 1 Score: 160 bits (406), Expect = 3.410e-44
Identity = 82/157 (52.23%), Postives = 109/157 (69.43%), Query Frame = 1
Query:    7 TSTRIAISPFQLAKLMICTPFFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            T  R  I+   L   ++C   + M+ LM +EA L+A TT+L+I  GRDVA   F++ DL+WI+  QS +Y+ GA SW +AERAG+ AYGRYMLRFARDNR   +LL DK ARE+VEPFL G TF   F+L+YE+E +L++ L L+ N IVLG +ID 
Sbjct:    2 TPPRKTITRLTLVGYLLCPQLYAMITLMVVEALLSAVTTWLIIQAGRDVATDAFVVSDLVWIVVTQSAAYVAGAVSWYFAERAGFRAYGRYMLRFARDNRGGARLLADKAAREQVEPFLAGTTFVNIFNLMYEVEAELKLALGLLFNGIVLGLEIDA 158          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: A0A1Q7BF01_9PROT (AAA family ATPase n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BF01_9PROT)

HSP 1 Score: 156 bits (394), Expect = 2.350e-42
Identity = 83/156 (53.21%), Postives = 106/156 (67.95%), Query Frame = 1
Query:   10 STRIAISPFQLAKLMICTPFFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            + R  I+ +Q    ++C P ++M+ LM  EA L A TT+L+I  GR VA   F   DL+WI  AQS SYI GA SW +AERAG+ A+GR+ML+FARDNR  T+LL DK ARE+VEPFLT  TF   F+ +YEIE  L++LL L+ N IVLG  ID 
Sbjct:   15 TARRPITRWQFVSYLLCRPLYVMITLMVTEALLAALTTWLIIRAGRAVANEDFQARDLIWIFVAQSASYIAGALSWYFAERAGFHAFGRFMLQFARDNRGYTRLLSDKQAREQVEPFLTSTTFNNIFNFMYEIEDQLKLLLGLIFNSIVLGVAIDA 170          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: A0A7Y0GFR3_9BURK (AAA family ATPase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0GFR3_9BURK)

HSP 1 Score: 144 bits (364), Expect = 4.350e-38
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 1
Query:   46 KLMICTPFFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIY 402
            + ++C PF+ ML L+ +EAA       L+IA GRDVAE  F+I D +WI+ AQS SY++GA SW++AERAG+ AYGRYMLRFARDNRH   LL DK  RER EPFLT ETF ++F L Y
Sbjct:   17 RFLLCAPFYWMLALLVVEAAXXXXXXALIIAAGRDVAEQDFLISDFVWIVVAQSASYVLGAVSWIFAERAGFGAYGRYMLRFARDNRHSPALLTDKGERERAEPFLTNETFHIFFELTY 135          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: A0A1G8NCD0_9RHOO (AAA ATPase domain-containing protein n=1 Tax=Propionivibrio dicarboxylicus TaxID=83767 RepID=A0A1G8NCD0_9RHOO)

HSP 1 Score: 123 bits (308), Expect = 4.810e-30
Identity = 64/134 (47.76%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   76 MLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            ML ++ ++ +  A TT+LVI   R++AE    + +L WI+AAQ+ +Y+ GA SW++AERAG+ AY RYMLRFAR NRH T LLGD +ARE  EPFLT E F+V F                  N +VLG +IDG
Sbjct:   24 MLMMILLQESCGAATTWLVIVIAREIAEATVSVSNLAWIVAAQTIAYLAGAVSWIFAERAGFGAYARYMLRFARLNRHRTPLLGDTEAREETEPFLTSEAFQVLFXXXXXXXXXXXXXXXXXXNALVLGIEIDG 157          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: UPI00123D684E (ABC transporter ATP-binding protein/permease n=1 Tax=Dechloromonas sp. CZR5 TaxID=2608630 RepID=UPI00123D684E)

HSP 1 Score: 117 bits (292), Expect = 8.920e-28
Identity = 61/134 (45.52%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   76 MLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            ML L+ ++    A TT+LVI   RD+ E     GD +WI+ AQ+ SY+ GA+SW+YAER G+ A+G+Y+L FAR NR  T LLGD  ARE  EPFLT E+F V F L+                  VLG +ID 
Sbjct:   24 MLFLVMLQELFGAGTTWLVIRVARDITEAHVTAGDFVWIVVAQTCSYLAGAASWIYAERTGFTAFGKYLLHFARSNRFRTALLGDAQARESTEPFLTNESFRVCFDLMXXXXXXXXXXXXXXXXATVLGMEIDA 157          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: UPI0005AA47C0 (ABC transporter ATP-binding protein n=1 Tax=Comamonas granuli TaxID=290309 RepID=UPI0005AA47C0)

HSP 1 Score: 116 bits (291), Expect = 1.300e-27
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   76 MLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            M+ L+ ++ A  A  T+ VIA  RD+A+G   +  L  + A QS SY+ GA+SW + ERAG+ AY RY+  F R NR  T LL D  ARE  EPFLTGE F++ F L+Y+I+ DLR+   +V N  V G  ID 
Sbjct:   28 MVLLVLLQEAAGAVATWWVIAIARDIADGHLGLRALAELAAIQSASYLAGAASWFFVERAGFAAYARYLQFFVRANRGRTDLLSDAQARESTEPFLTGEAFQISFSLVYDIQYDLRLFANVVFNAAVFGWAIDA 161          
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Match: A0A524BDK8_9RHOO (AAA family ATPase n=2 Tax=Rhodocyclales TaxID=206389 RepID=A0A524BDK8_9RHOO)

HSP 1 Score: 112 bits (279), Expect = 6.190e-26
Identity = 62/137 (45.26%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   67 FFIMLGLMSIEAALNATTTYLVIATGRDVAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARDNRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNVIVLGTQIDG 477
            FF MLGL+ ++  L A TT+LVI   R + +G+       WI+  Q+ SY  GA SWLYAERAG+ A+G+Y+L+FAR NR +T LL D + RE  EPFLT ETF V F L+                 IV G +ID 
Sbjct:   20 FFAMLGLIVLQELLGAATTWLVIRLARGMVDGQVEASAFGWIVVTQTLSYAAGAVSWLYAERAGFSAFGKYLLQFARLNRFQTALLADTEVREGTEPFLTNETFRVCFDLMXXXXXXXXXXXXXXXXXIVFGIEIDA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51811.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A127EYQ1_9HYPH3.370e-6877.46Uncharacterized protein n=2 Tax=Rhodoplanes sp. Z2... [more]
A0A1H0VSC2_9BURK5.840e-4752.83ABC-type bacteriocin/lantibiotic exporter, contain... [more]
UPI001BCED3CF1.610e-4661.59hypothetical protein n=1 Tax=Variovorax sp. PCZ-1 ... [more]
J5PP17_9RHOB3.410e-4452.23Uncharacterized protein n=1 Tax=Rhodovulum sp. PH1... [more]
A0A1Q7BF01_9PROT2.350e-4253.21AAA family ATPase n=1 Tax=Alphaproteobacteria bact... [more]
A0A7Y0GFR3_9BURK4.350e-3858.82AAA family ATPase n=1 Tax=Polaromonas sp. TaxID=18... [more]
A0A1G8NCD0_9RHOO4.810e-3047.76AAA ATPase domain-containing protein n=1 Tax=Propi... [more]
UPI00123D684E8.920e-2845.52ABC transporter ATP-binding protein/permease n=1 T... [more]
UPI0005AA47C01.300e-2746.27ABC transporter ATP-binding protein n=1 Tax=Comamo... [more]
A0A524BDK8_9RHOO6.190e-2645.26AAA family ATPase n=2 Tax=Rhodocyclales TaxID=2063... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51811contigP-wetherbeei_contig51811:74..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1187851.A33M_2245
Model size477
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.58e-45
EggNOG OGsCOG1132@1|root,COG1132@2|Bacteria,1RC33@1224|Proteobacteria
Description(ABC) transporter
Cds size477
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.6388757-CDS-P-wetherbeei_contig51811:73..5501683186777.6388757-CDS-P-wetherbeei_contig51811:73..550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51811 74..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51811.1.1prot_P-wetherbeei_contig51811.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51811 74..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51811.1.1

>prot_P-wetherbeei_contig51811.1.1 ID=prot_P-wetherbeei_contig51811.1.1|Name=mRNA_P-wetherbeei_contig51811.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MTTSTRIAISPFQLAKLMICTPFFIMLGLMSIEAALNATTTYLVIATGRD
VAEGRFIIGDLMWILAAQSTSYIVGASSWLYAERAGYLAYGRYMLRFARD
NRHETKLLGDKDARERVEPFLTGETFEVYFHLIYEIEGDLRILLALVLNV
IVLGTQIDG
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mRNA from alignment at P-wetherbeei_contig51811:74..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51811.1.1 ID=mRNA_P-wetherbeei_contig51811.1.1|Name=mRNA_P-wetherbeei_contig51811.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig51811:74..550+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACGAGCACGAGAATCGCGATCAGCCCGTTCCAGCTTGCCAAGCT GATGATCTGCACGCCCTTTTTCATCATGCTCGGGCTGATGTCGATCGAGG CGGCGCTGAACGCCACGACGACCTATCTCGTGATCGCGACCGGCCGGGAC GTGGCCGAGGGCCGCTTCATCATCGGCGACCTGATGTGGATTCTGGCGGC GCAATCGACCTCGTACATCGTGGGCGCGTCCAGCTGGCTCTATGCCGAAC GGGCCGGCTATCTCGCCTATGGGCGCTACATGCTGCGGTTCGCCCGCGAC AACCGCCATGAGACCAAGCTGCTCGGCGACAAGGATGCGCGCGAGCGGGT CGAGCCGTTCCTGACCGGGGAGACCTTCGAGGTCTATTTCCACCTGATCT ACGAGATCGAGGGCGACCTCCGCATCCTGCTGGCGCTGGTGCTGAACGTG ATCGTGCTCGGCACCCAGATCGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51811:74..550+

>mRNA_P-wetherbeei_contig51811.1.1 ID=mRNA_P-wetherbeei_contig51811.1.1|Name=mRNA_P-wetherbeei_contig51811.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig51811:74..550+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACGAGCACGAGAATCGCGATCAGCCCGTTCCAGCTTGCCAAGCT
GATGATCTGCACGCCCTTTTTCATCATGCTCGGGCTGATGTCGATCGAGG
CGGCGCTGAACGCCACGACGACCTATCTCGTGATCGCGACCGGCCGGGAC
GTGGCCGAGGGCCGCTTCATCATCGGCGACCTGATGTGGATTCTGGCGGC
GCAATCGACCTCGTACATCGTGGGCGCGTCCAGCTGGCTCTATGCCGAAC
GGGCCGGCTATCTCGCCTATGGGCGCTACATGCTGCGGTTCGCCCGCGAC
AACCGCCATGAGACCAAGCTGCTCGGCGACAAGGATGCGCGCGAGCGGGT
CGAGCCGTTCCTGACCGGGGAGACCTTCGAGGTCTATTTCCACCTGATCT
ACGAGATCGAGGGCGACCTCCGCATCCTGCTGGCGCTGGTGCTGAACGTG
ATCGTGCTCGGCACCCAGATCGACGGC
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