mRNA_P-wetherbeei_contig51677.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51677.1.1
Unique NamemRNA_P-wetherbeei_contig51677.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: A0A327MCB4_9PROT (MBL fold metallo-hydrolase n=1 Tax=Roseicella frigidaeris TaxID=2230885 RepID=A0A327MCB4_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 7.030e-8
Identity = 31/69 (44.93%), Postives = 37/69 (53.62%), Query Frame = 1
Query:   16 VTVMAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPGQ 222
            V V A I+TH H   WD     ALPK IPL   +      I+AA FTDVRVL    +  G+  + TPGQ
Sbjct:   58 VDVDAVIVTHTHLDHWDAAARDALPKAIPLFAQDETDAAAIRAAGFTDVRVLAAATVFGGITLAKTPGQ 126          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: UPI001F0D6B56 (MBL fold metallo-hydrolase n=1 Tax=Alcaligenes xylosoxydans xylosoxydans TaxID=85698 RepID=UPI001F0D6B56)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   22 VMAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPG 219
            V A ++TH H   WDE  AR++PK++P+   +      I++  FTDVRVL G+ +  GV  S T G
Sbjct:   83 VDAVVVTHTHEDHWDETAARSIPKNLPVYVQHQADAAKIRSQGFTDVRVLNGSAVFNGVTISKTGG 148          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: A0A4R5QKI8_9PROT (MBL fold metallo-hydrolase n=2 Tax=Dankookia rubra TaxID=1442381 RepID=A0A4R5QKI8_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.860e-7
Identity = 30/69 (43.48%), Postives = 37/69 (53.62%), Query Frame = 1
Query:   16 VTVMAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPGQ 222
            + V A I+TH H   WD+    +LPK +PL   N      I+AA FTDVRVL       GV  + TPGQ
Sbjct:   58 IDVDAVIVTHTHLDHWDDTAKASLPKGLPLFAQNEKDATAIRAAGFTDVRVLSAETGFGGVTLAKTPGQ 126          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: D4DMH6_NEIEG (Lactamase_B domain-containing protein n=44 Tax=Proteobacteria TaxID=1224 RepID=D4DMH6_NEIEG)

HSP 1 Score: 55.8 bits (133), Expect = 2.110e-7
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   22 VMAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPG 219
            V A I+TH H   WDE  AR++PK++P+   +      I++  FTDVRVL G+ +  GV  S T G
Sbjct:   83 VDAVIVTHTHEDHWDETAARSIPKNLPVYVQHQADAAKIRSQGFTDVRVLNGSAVFNGVTISKTGG 148          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: A1KU27_NEIMF (Lactamase_B domain-containing protein n=10 Tax=Neisseria meningitidis TaxID=487 RepID=A1KU27_NEIMF)

HSP 1 Score: 52.8 bits (125), Expect = 1.280e-6
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   28 AGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPG 219
            A I+TH H   W E  AR++PK++P+   +      I++  FTDVRVL G+ +  GV  S T G
Sbjct:    3 AVIVTHTHEDHWGETAARSIPKNLPVYVQHQADAAKIRSQGFTDVRVLNGSTVFNGVTISKTGG 66          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: E0SCZ4_DICD3 (ABC transporter permease protein yddR n=17 Tax=Dickeya TaxID=204037 RepID=E0SCZ4_DICD3)

HSP 1 Score: 51.6 bits (122), Expect = 6.720e-6
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1
Query:   22 VMAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPGQ 222
            V A I+TH H   WDE     LPK +P+   +   RE I+AA F+DVR+L    +   +    TPGQ
Sbjct:   70 VDAVIVTHTHLDHWDEAAEIHLPKSLPIFAQHEQDRETIRAAGFSDVRLLTEQSVFGDIMLIKTPGQ 136          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: UPI001CC1B239 (MBL fold metallo-hydrolase n=1 Tax=Planococcus sp. 4-30 TaxID=2874583 RepID=UPI001CC1B239)

HSP 1 Score: 51.2 bits (121), Expect = 8.780e-6
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1
Query:   28 AGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPGQ 222
            A I+TH H   WD+    ALPK+I L   N    + ++ A FT+V VL G  + EG++   T G+
Sbjct:   62 AVIVTHLHLDHWDDAAKEALPKEIKLFTQNEEDAKEVQKAGFTNVEVLQGDTVFEGIQLIKTKGE 126          
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Match: A0A4Q0ZLM1_9PROT (Lactamase_B domain-containing protein n=1 Tax=Arcobacter sp. CECT 8985 TaxID=1935424 RepID=A0A4Q0ZLM1_9PROT)

HSP 1 Score: 49.3 bits (116), Expect = 4.430e-5
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   22 VMAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLMGTPIVEGVKTSDTPGQ 222
            V A I+TH HP   D+   + +PK++ L   N   +  IK   FT++R+L G  I EG+  S T GQ
Sbjct:   60 VDAIIITHTHPDHIDDAAFKLIPKNMLLFVQNEQDKVFIKEKGFTNIRILDGNTIFEGINISITKGQ 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51677.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A327MCB4_9PROT7.030e-844.93MBL fold metallo-hydrolase n=1 Tax=Roseicella frig... [more]
UPI001F0D6B561.400e-740.91MBL fold metallo-hydrolase n=1 Tax=Alcaligenes xyl... [more]
A0A4R5QKI8_9PROT1.860e-743.48MBL fold metallo-hydrolase n=2 Tax=Dankookia rubra... [more]
D4DMH6_NEIEG2.110e-742.42Lactamase_B domain-containing protein n=44 Tax=Pro... [more]
A1KU27_NEIMF1.280e-640.63Lactamase_B domain-containing protein n=10 Tax=Nei... [more]
E0SCZ4_DICD36.720e-640.30ABC transporter permease protein yddR n=17 Tax=Dic... [more]
UPI001CC1B2398.780e-638.46MBL fold metallo-hydrolase n=1 Tax=Planococcus sp.... [more]
A0A4Q0ZLM1_9PROT4.430e-538.81Lactamase_B domain-containing protein n=1 Tax=Arco... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51677contigP-wetherbeei_contig51677:13..234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1005999.GLGR_0670
PFAMsLactamase_B_2,Lactamase_B_3
Model size222
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-10
EggNOG OGsCOG2220@1|root,COG2220@2|Bacteria,1MVP2@1224|Proteobacteria,1RRSZ@1236|Gammaproteobacteria
DescriptionZn-dependent hydrolases of the beta-lactamase fold
Cds size198
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.7786217-UTR-P-wetherbeei_contig51677:12..361683186775.7786217-UTR-P-wetherbeei_contig51677:12..36Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51677 13..36 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.792772-CDS-P-wetherbeei_contig51677:36..2341683186775.792772-CDS-P-wetherbeei_contig51677:36..234Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51677 37..234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51677.1.1prot_P-wetherbeei_contig51677.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51677 37..234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51677.1.1

>prot_P-wetherbeei_contig51677.1.1 ID=prot_P-wetherbeei_contig51677.1.1|Name=mRNA_P-wetherbeei_contig51677.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MAGILTHAHPVQWDEHGARALPKDIPLIRANFGGREIIKAARFTDVRVLM
GTPIVEGVKTSDTPGQ
back to top

mRNA from alignment at P-wetherbeei_contig51677:13..234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51677.1.1 ID=mRNA_P-wetherbeei_contig51677.1.1|Name=mRNA_P-wetherbeei_contig51677.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig51677:13..234+ (Phaeothamnion wetherbeei SAG_119_79)
CCAAACGCAACAGGAGTTACCGTGATGGCAGGCATCCTTACGCACGCCCA TCCTGTTCAATGGGATGAGCATGGGGCTCGCGCACTGCCCAAAGACATCC CTTTAATTCGTGCAAACTTCGGTGGCCGCGAAATTATCAAGGCTGCGCGA TTTACGGACGTACGCGTACTAATGGGCACTCCGATTGTCGAGGGCGTGAA AACGTCCGACACACCCGGGCAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51677:13..234+

>mRNA_P-wetherbeei_contig51677.1.1 ID=mRNA_P-wetherbeei_contig51677.1.1|Name=mRNA_P-wetherbeei_contig51677.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig51677:13..234+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGGCATCCTTACGCACGCCCATCCTGTTCAATGGGATGAGCATGG
GGCTCGCGCACTGCCCAAAGACATCCCTTTAATTCGTGCAAACTTCGGTG
GCCGCGAAATTATCAAGGCTGCGCGATTTACGGACGTACGCGTACTAATG
GGCACTCCGATTGTCGAGGGCGTGAAAACGTCCGACACACCCGGGCAA
back to top