mRNA_P-wetherbeei_contig51550.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51550.2.1
Unique NamemRNA_P-wetherbeei_contig51550.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51550.2.1 vs. uniprot
Match: A0A177Q0A1_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium SCGC AG-212-D09 TaxID=1799652 RepID=A0A177Q0A1_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 4.290e-5
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    7 SGITAGSAPRDIATAPDGTLWFTENALIGRLGRITTAGTVTEF 135
            SG++A SAP  IAT P G +WFTE A   R+GRIT+AGT++EF
Sbjct:   18 SGLSADSAPWGIATRPGGAMWFTERAA-NRIGRITSAGTISEF 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51550.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A177Q0A1_9ACTN4.290e-560.47Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51550contigP-wetherbeei_contig51550:29..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1449346.JQMO01000001_gene7043
PFAMsDUF11
Model size522
Max annot lvl201174|Actinobacteria
KEGG koko:K18235
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000137
EggNOG OGsCOG4257@1|root,COG4257@2|Bacteria,2GJU3@201174|Actinobacteria
DescriptionInactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid
Cds size522
COG categoryV
BRITEko00000,ko01000,ko01504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.5291007-CDS-P-wetherbeei_contig51550:28..5501683186774.5291007-CDS-P-wetherbeei_contig51550:28..550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51550 29..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51550.2.1prot_P-wetherbeei_contig51550.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51550 29..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51550.2.1

>prot_P-wetherbeei_contig51550.2.1 ID=prot_P-wetherbeei_contig51550.2.1|Name=mRNA_P-wetherbeei_contig51550.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
FSSGITAGSAPRDIATAPDGTLWFTENALIGRLGRITTAGTVTEFSSGLT
VGGGPWGIAAASDGNLWFTENALLGSIGRATTLGSVTQFTSGLTINGQLR
HIAEGPDGNLWSTWSANPGRIVRTTPSGTITQFTAGLSTNGAPSGIAAGP
DGNVWFTERANPARIGRITPAGVI
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mRNA from alignment at P-wetherbeei_contig51550:29..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51550.2.1 ID=mRNA_P-wetherbeei_contig51550.2.1|Name=mRNA_P-wetherbeei_contig51550.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig51550:29..550+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCCAGCGGCATCACCGCCGGCAGCGCGCCGCGCGACATCGCCACCGC
GCCCGACGGGACGCTCTGGTTCACCGAGAACGCGCTCATCGGACGCCTCG
GGCGCATCACCACCGCGGGCACGGTGACCGAGTTCTCCAGCGGGCTGACC
GTCGGTGGGGGTCCGTGGGGGATCGCCGCGGCCTCCGACGGGAACCTCTG
GTTCACCGAGAACGCCCTTCTGGGGAGCATCGGCCGTGCGACGACCCTCG
GCTCGGTCACCCAGTTCACGAGCGGGCTGACCATCAACGGCCAGCTCCGG
CACATCGCCGAGGGGCCCGACGGGAACCTCTGGTCCACCTGGAGCGCGAA
CCCCGGCCGCATCGTTCGCACCACCCCCTCGGGGACGATCACCCAGTTCA
CCGCCGGCCTGTCCACCAACGGCGCGCCGTCGGGCATCGCGGCCGGCCCC
GACGGCAACGTCTGGTTCACCGAGCGGGCCAATCCGGCCCGGATCGGTCG
GATCACGCCGGCCGGTGTGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51550:29..550+

>mRNA_P-wetherbeei_contig51550.2.1 ID=mRNA_P-wetherbeei_contig51550.2.1|Name=mRNA_P-wetherbeei_contig51550.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig51550:29..550+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCCAGCGGCATCACCGCCGGCAGCGCGCCGCGCGACATCGCCACCGC
GCCCGACGGGACGCTCTGGTTCACCGAGAACGCGCTCATCGGACGCCTCG
GGCGCATCACCACCGCGGGCACGGTGACCGAGTTCTCCAGCGGGCTGACC
GTCGGTGGGGGTCCGTGGGGGATCGCCGCGGCCTCCGACGGGAACCTCTG
GTTCACCGAGAACGCCCTTCTGGGGAGCATCGGCCGTGCGACGACCCTCG
GCTCGGTCACCCAGTTCACGAGCGGGCTGACCATCAACGGCCAGCTCCGG
CACATCGCCGAGGGGCCCGACGGGAACCTCTGGTCCACCTGGAGCGCGAA
CCCCGGCCGCATCGTTCGCACCACCCCCTCGGGGACGATCACCCAGTTCA
CCGCCGGCCTGTCCACCAACGGCGCGCCGTCGGGCATCGCGGCCGGCCCC
GACGGCAACGTCTGGTTCACCGAGCGGGCCAATCCGGCCCGGATCGGTCG
GATCACGCCGGCCGGTGTGATC
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