mRNA_P-wetherbeei_contig21296.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21296.1.1
Unique NamemRNA_P-wetherbeei_contig21296.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21296.1.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.110e-24
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 RALKAQRCRVFGSSGLVLETGTHLEDIMMADYFQIDDRMVASPDPSGQGVTVSVTVAIRFFKSTMLRRTIETKSLKDSQQWW 246
            RA+K QRCR++   GL+LET THLEDI+M+DYFQIDDR V  P   G  V V V + I+FFKSTM R+TIETKSL +++Q W
Sbjct:  522 RAVKLQRCRLYDEHGLILETSTHLEDILMSDYFQIDDRCVVQPGQDG-AVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVW 602
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BLAST of mRNA_P-wetherbeei_contig21296.1.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 8.300e-24
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 RALKAQRCRVFGSSGLVLETGTHLEDIMMADYFQIDDRMVASPDPSGQGVTVSVTVAIRFFKSTMLRRTIETKSLKDSQQWW 246
            RA+K QRCR++   GL+LET THLEDI+M+DYFQIDDR V  P   G  V V V + I+FFKSTM R+TIETKSL +++Q W
Sbjct:  413 RAVKLQRCRLYDEHGLILETSTHLEDIVMSDYFQIDDRCVVQPGQDG-AVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVW 493
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BLAST of mRNA_P-wetherbeei_contig21296.1.1 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-8
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 RALKAQRCRVFGSSGLVLETGTHLEDIMMADYFQIDDRMVASPDPSGQGVTVSVTVAIRFFKSTMLRRTIETKSLKDSQQWW 246
            R  K QRCR FG  GLVL     +EDI   D F I DR V +P     GV V+    +++ KST+ +R IE+ S  D Q ++
Sbjct:  316 RTTKIQRCRAFGRHGLVLHGVLSMEDIPYRDCFAIHDRWVVTP--RDDGVDVAFEFEVKWSKSTIFKRKIESSSRSDLQAYY 395
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21296.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0Q2_9PHAE6.110e-2460.98VASt domain-containing protein (Fragment) n=1 Tax=... [more]
D7FKF6_ECTSI8.300e-2460.98VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8J2ST97_9STRA2.110e-841.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21296contigP-wetherbeei_contig21296:276..807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKF6
Preferred nameVAD1
PFAMsDUF4782,GRAM
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
Exons2
Evalue1.36e-24
EggNOG OGsKOG1032@1|root,KOG1032@2759|Eukaryota
Ec32 ortholog descriptionGRAM domain
Ec32 orthologEc-12_002240.1
Descriptionintracellular sterol transport
Cds size273
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.9973743-CDS-P-wetherbeei_contig21296:275..3771683186220.9973743-CDS-P-wetherbeei_contig21296:275..377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21296 276..377 +
1683186221.0080068-CDS-P-wetherbeei_contig21296:636..8071683186221.0080068-CDS-P-wetherbeei_contig21296:636..807Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21296 637..807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21296.1.1prot_P-wetherbeei_contig21296.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21296 276..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21296.1.1

>prot_P-wetherbeei_contig21296.1.1 ID=prot_P-wetherbeei_contig21296.1.1|Name=mRNA_P-wetherbeei_contig21296.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
RALKAQRCRVFGSSGLVLETGTHLEDIMMADYFQIDDRMVASPDPSGQGV
TVSVTVAIRFFKSTMLRRTIETKSLKDSQQWWTVREFYKS*
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mRNA from alignment at P-wetherbeei_contig21296:276..807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21296.1.1 ID=mRNA_P-wetherbeei_contig21296.1.1|Name=mRNA_P-wetherbeei_contig21296.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=532bp|location=Sequence derived from alignment at P-wetherbeei_contig21296:276..807+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGCGCTCAAGGCGCAGCGTTGCCGTGTCTTTGGGAGCAGCGGCCTCGT
CCTCGAAACCGGGACGCACCTCGAGGACATCATGATGGCCGACTACTTTC
AGGTGAATTTCGGCGGGCCATTATGACGTTCAGCTCTGACGGTGTGCATG
TTTGTAGGGTTGCTGCGTCAGCTTACGCTTGCTCAACCTTTCTAACCTGG
CGGTCCTAAGCCAAGCTCCTGCTAACGCGGCATATTGCCTGTCTGTACGC
ATCTTTCCTTTTTGGCGCGGCACCGCTTCGCAGCTGATGTTGATGTTTGC
GACCTCTTGTCCCGTTTCCCTTCTTCGGACTTGCCGGCCGCCGCCTTTCG
CCAAATGGCAGATCGACGACCGGATGGTGGCGTCGCCGGATCCGTCGGGG
CAAGGCGTGACGGTGTCGGTGACGGTGGCGATCCGCTTCTTCAAGAGCAC
CATGCTGCGCCGCACCATCGAGACCAAGAGTCTCAAGGACAGCCAGCAGT
GGTGGACGGTGCGTGAATTCTATAAGTCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21296:276..807+

>mRNA_P-wetherbeei_contig21296.1.1 ID=mRNA_P-wetherbeei_contig21296.1.1|Name=mRNA_P-wetherbeei_contig21296.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig21296:276..807+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGCGCTCAAGGCGCAGCGTTGCCGTGTCTTTGGGAGCAGCGGCCTCGT
CCTCGAAACCGGGACGCACCTCGAGGACATCATGATGGCCGACTACTTTC
AGATCGACGACCGGATGGTGGCGTCGCCGGATCCGTCGGGGCAAGGCGTG
ACGGTGTCGGTGACGGTGGCGATCCGCTTCTTCAAGAGCACCATGCTGCG
CCGCACCATCGAGACCAAGAGTCTCAAGGACAGCCAGCAGTGGTGGACGG
TGCGTGAATTCTATAAGTCTTGA
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