mRNA_P-wetherbeei_contig21038.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21038.1.1
Unique NamemRNA_P-wetherbeei_contig21038.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A6I3EZB0_9ACTN (MFS transporter n=2 Tax=root TaxID=1 RepID=A0A6I3EZB0_9ACTN)

HSP 1 Score: 197 bits (502), Expect = 7.730e-59
Identity = 104/131 (79.39%), Postives = 117/131 (89.31%), Query Frame = 1
Query:   79 TPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            +PFR++ARTHALM+ GDVAMY ALAGSVLFSL  DAQR KVLLYLLVSVAPFAVVAP IGPTVDRIPGGRR VMQ+TS+ R ++Y+VMAFHT D+LLYPL+FG MV+ KTY VSKSALVPSVVR+D ELVE
Sbjct:    5 SPFRKLARTHALMAMGDVAMYGALAGSVLFSLPADAQRDKVLLYLLVSVAPFAVVAPAIGPTVDRIPGGRRMVMQITSMTRALLYVVMAFHTGDLLLYPLIFGAMVMQKTYTVSKSALVPSVVRSDAELVE 135          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A7X9Q1C4_9ACTN (MFS transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q1C4_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 2.170e-57
Identity = 111/173 (64.16%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 VTNERLRADAVYRRGTRPGPSRPV-------------PV---TPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            +++ER+RADAVYR G RP  SRP              PV   +PFRR+ART AL++ GD AMY A+AG VL SL PDAQR  VL YL+VS APF VVAPLIGPT+DRIPGGRR V+Q+T++ R V+Y+ MAFHTDD+LLYPLVF  +V+ KTYAVSKSALVPSVVR+D+ELVE
Sbjct:    1 MSSERVRADAVYRSGERPRSSRPAGTGSGGGGHRRQRPVQNQSPFRRLARTTALIAIGDAAMYGAVAGEVL-SLGPDAQRSAVLRYLIVSFAPFVVVAPLIGPTIDRIPGGRRMVVQITAVARAVLYVFMAFHTDDILLYPLVFVALVMQKTYAVSKSALVPSVVRSDDELVE 172          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A3C2B5N0_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B5N0_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 2.000e-53
Identity = 103/170 (60.59%), Postives = 127/170 (74.71%), Query Frame = 1
Query:    1 VTNERLRADAVYRRGTRPGP------------SRPVPV-TPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            ++NER+R +AVY  G RP P            +R V   TPFRR+ARTHALM+ GDVAM+A+LAGSVL  L P  QR  VL YL+VS APF V+APLIGPT+DRIPGGRR V+Q T++ R  +Y++MAFHT DVLLYPL+   +V+ KTYAVSK+A+VP VVRN+EELVE
Sbjct:    1 MSNERVRPNAVYPAGRRPRPGQRDSSNATGSTTRSVSTQTPFRRLARTHALMTVGDVAMFASLAGSVL-GLDPAGQRDAVLKYLVVSFAPFVVLAPLIGPTIDRIPGGRRVVIQGTAVVRAALYVLMAFHTKDVLLYPLLLIALVMQKTYAVSKTAVVPLVVRNEEELVE 169          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A6I3WPW9_9ACTN (MFS transporter n=2 Tax=root TaxID=1 RepID=A0A6I3WPW9_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 5.890e-41
Identity = 84/141 (59.57%), Postives = 106/141 (75.18%), Query Frame = 1
Query:   49 RPGPSRPVPVTPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            RP P+ P  ++PF R+AR  A+ +AGD  +  ALA SV F LSP A RPKVLL+LLV+  PF VVAP+IGP VDR+ GGRR VMQ+ +L R +  L+MAFH DDVLLYP+ F  +VL KT ++SKSALVPSVVR++ +LVE
Sbjct:   28 RPAPAGPR-ISPFTRLARVQAISAAGDGCLAVALAVSVFFGLSPTAARPKVLLFLLVTFIPFVVVAPMIGPLVDRVAGGRRLVMQVVALLRALSLLLMAFHLDDVLLYPIAFAALVLQKTQSISKSALVPSVVRHESDLVE 167          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A7K1B9H3_9ACTN (MFS transporter (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K1B9H3_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 9.860e-40
Identity = 81/138 (58.70%), Postives = 105/138 (76.09%), Query Frame = 1
Query:   58 PSRPVPVTPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            P+   P + F R+ARTHA M+AGD AM  ALA SVLFSL  DA R +VLL+L +S  PF  VAPLIGP +DR+ GGRR V+Q+ ++ RVV+ ++MAF+ D +LL+PL F  +V  KTYA+SKSALVP+VVR++EELVE
Sbjct:    9 PTGAAPSSRFGRLARTHATMAAGDAAMAVALADSVLFSLDADAARSRVLLFLGISFVPFLFVAPLIGPAIDRMKGGRRLVVQIVTVVRVVLSVLMAFNADSLLLFPLAFMALVAQKTYAISKSALVPTVVRSEEELVE 146          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A7K0VJB8_9ACTN (MFS transporter n=2 Tax=root TaxID=1 RepID=A0A7K0VJB8_9ACTN)

HSP 1 Score: 146 bits (368), Expect = 5.400e-39
Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    1 VTNERLRAD-----------AVYRRGTRPGPSRPVPVTPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            +T+ERLR                R G RP  ++P   +PF R+AR  A+ +AGD  +  ALA SV F L+P A RPKVLL+L+V+  PF VVAPLIGP VDR+ GGRR VMQ+ +L R    ++MAFH +DVLLYP+ F  +VL KT  +S+SALVPSVVRN+ +LVE
Sbjct:    1 MTSERLRGSRSEIHASRTSGTSSRIGNRPLTAQPR-FSPFTRLARVQAVSAAGDGCLALALAASVFFGLTPTAARPKVLLFLVVTFVPFVVVAPLIGPLVDRVAGGRRLVMQIVALLRAFTMVLMAFHLNDVLLYPIAFAALVLQKTQGISRSALVPSVVRNETDLVE 167          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A7W1Z8N6_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1Z8N6_9ACTN)

HSP 1 Score: 145 bits (367), Expect = 8.070e-39
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1
Query:   70 VPVTPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            VP + FRR+A THA M  GD AM  ALA S+ FS+ P A R KVLL+L++S APF V+APL+GP +DR  GGRR V+Q+ +  R+V+ L++A + D + L+PLVF  +VL KTY VSKSALVPSVVR++ ELVE
Sbjct:   18 VPASKFRRLATTHAAMIGGDAAMIVALADSLFFSIDPGAARGKVLLFLVISFAPFLVIAPLVGPVIDRAAGGRRLVIQIVAALRIVLSLLIASYVDSLALFPLVFSALVLQKTYTVSKSALVPSVVRSESELVE 151          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A4P5S5B2_9ACTN (MFS transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5S5B2_9ACTN)

HSP 1 Score: 145 bits (365), Expect = 9.990e-39
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:   43 GTRPGPSRPVPVTPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            G RPG     P+ P  R+ R HALM+AG+  M  ALA S+  S+SPDA R KV+L+L +S+APFAVVAPL+GP +DR+PGG+R V+ L S  R V+ + M FH D + L+PL F  +VLSKTY+++KSALVP+ +  DE LVE
Sbjct:   13 GRRPGGL--APIAPLVRLKRVHALMTAGETIMAVALADSLFLSISPDAARTKVILFLAISMAPFAVVAPLVGPAIDRMPGGQRLVIVLVSFLRAVVMVAMMFHVDSLALFPLAFAALVLSKTYSIAKSALVPTTIVGDEGLVE 153          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: A0A6C7E2X7_ILUCY (Putative major facilitator superfamily transporter n=2 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A6C7E2X7_ILUCY)

HSP 1 Score: 143 bits (361), Expect = 4.060e-38
Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 1
Query:   76 VTPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            ++PF R+A THALM AGD AM  ALA S  FS+  DA R +VL++L +S APF  VAPLIGP +DRI GGRR V+Q  ++ R+V+ ++MA + D ++L+PLVFG +VL KTY VSKSALVPS VR++ ELVE
Sbjct:    1 MSPFTRLAVTHALMMAGDAAMVVALADSFFFSVELDAARTQVLMFLAISFAPFLFVAPLIGPLIDRIAGGRRLVIQTVAIARLVLLILMAQYIDGIVLFPLVFGSLVLQKTYVVSKSALVPSTVRSETELVE 132          
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Match: UPI000E34C615 (hypothetical protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E34C615)

HSP 1 Score: 143 bits (360), Expect = 1.370e-37
Identity = 77/131 (58.78%), Postives = 98/131 (74.81%), Query Frame = 1
Query:   79 TPFRRMARTHALMSAGDVAMYAALAGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVMQLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVRNDEELVE 471
            +PFRR+A  HA M   D AM  ALA +V FS+ P A R KVLL+L++S APF V+APLIGP +DRI GGRR ++Q   + RVV+ +VMA   DDV+L+PLVF  +VL KTY VSKSALVPSVVR++ +L+E
Sbjct:   19 SPFRRLAIVHAAMMGADAAMVVALADTVFFSVDPQAARDKVLLFLVISFAPFLVLAPLIGPLLDRIAGGRRAMIQFVGISRVVLSIVMAVFVDDVVLFPLVFIALVLQKTYIVSKSALVPSVVRSESDLIE 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3EZB0_9ACTN7.730e-5979.39MFS transporter n=2 Tax=root TaxID=1 RepID=A0A6I3E... [more]
A0A7X9Q1C4_9ACTN2.170e-5764.16MFS transporter n=1 Tax=Actinomycetia bacterium Ta... [more]
A0A3C2B5N0_9ACTN2.000e-5360.59Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A6I3WPW9_9ACTN5.890e-4159.57MFS transporter n=2 Tax=root TaxID=1 RepID=A0A6I3W... [more]
A0A7K1B9H3_9ACTN9.860e-4058.70MFS transporter (Fragment) n=1 Tax=Actinomycetia b... [more]
A0A7K0VJB8_9ACTN5.400e-3951.79MFS transporter n=2 Tax=root TaxID=1 RepID=A0A7K0V... [more]
A0A7W1Z8N6_9ACTN8.070e-3957.46Uncharacterized protein n=3 Tax=Acidimicrobiia bac... [more]
A0A4P5S5B2_9ACTN9.990e-3953.85MFS transporter n=1 Tax=Actinomycetia bacterium Ta... [more]
A0A6C7E2X7_ILUCY4.060e-3858.33Putative major facilitator superfamily transporter... [more]
UPI000E34C6151.370e-3758.78hypothetical protein n=1 Tax=Desertimonas flava Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21038contigP-wetherbeei_contig21038:2..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_07790
PFAMsMFS_1
Model size471
Max annot lvl84992|Acidimicrobiia
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.65e-39
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,2GKRT@201174|Actinobacteria,4CN19@84992|Acidimicrobiia
DescriptionMajor Facilitator Superfamily
Cds size471
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.3153908-CDS-P-wetherbeei_contig21038:1..4721683186215.3153908-CDS-P-wetherbeei_contig21038:1..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21038 2..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21038.1.1prot_P-wetherbeei_contig21038.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21038 2..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21038.1.1

>prot_P-wetherbeei_contig21038.1.1 ID=prot_P-wetherbeei_contig21038.1.1|Name=mRNA_P-wetherbeei_contig21038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
VTNERLRADAVYRRGTRPGPSRPVPVTPFRRMARTHALMSAGDVAMYAAL
AGSVLFSLSPDAQRPKVLLYLLVSVAPFAVVAPLIGPTVDRIPGGRRFVM
QLTSLGRVVIYLVMAFHTDDVLLYPLVFGVMVLSKTYAVSKSALVPSVVR
NDEELVE
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mRNA from alignment at P-wetherbeei_contig21038:2..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21038.1.1 ID=mRNA_P-wetherbeei_contig21038.1.1|Name=mRNA_P-wetherbeei_contig21038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig21038:2..472- (Phaeothamnion wetherbeei SAG_119_79)
GTGACCAACGAGCGGCTGCGGGCCGATGCCGTCTACCGCCGTGGCACCAG ACCTGGGCCGAGTCGCCCCGTCCCGGTGACGCCGTTCCGGCGGATGGCGC GCACGCACGCGCTGATGTCGGCCGGCGACGTGGCCATGTACGCGGCGCTC GCCGGCTCGGTGCTGTTCAGCCTCAGCCCGGACGCGCAGCGCCCGAAGGT GTTGCTCTACCTCCTGGTGTCGGTGGCACCGTTCGCCGTGGTGGCGCCGC TGATCGGTCCGACCGTGGACCGCATCCCCGGTGGGCGCCGGTTCGTGATG CAGCTGACGTCGCTCGGTCGCGTCGTGATCTACCTGGTGATGGCGTTCCA CACCGACGACGTGCTGCTGTACCCGCTCGTGTTCGGGGTGATGGTGCTGA GCAAGACGTACGCCGTGTCGAAGTCGGCGCTGGTGCCGAGCGTGGTGCGC AACGACGAGGAGCTCGTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21038:2..472-

>mRNA_P-wetherbeei_contig21038.1.1 ID=mRNA_P-wetherbeei_contig21038.1.1|Name=mRNA_P-wetherbeei_contig21038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig21038:2..472- (Phaeothamnion wetherbeei SAG_119_79)
GTGACCAACGAGCGGCTGCGGGCCGATGCCGTCTACCGCCGTGGCACCAG
ACCTGGGCCGAGTCGCCCCGTCCCGGTGACGCCGTTCCGGCGGATGGCGC
GCACGCACGCGCTGATGTCGGCCGGCGACGTGGCCATGTACGCGGCGCTC
GCCGGCTCGGTGCTGTTCAGCCTCAGCCCGGACGCGCAGCGCCCGAAGGT
GTTGCTCTACCTCCTGGTGTCGGTGGCACCGTTCGCCGTGGTGGCGCCGC
TGATCGGTCCGACCGTGGACCGCATCCCCGGTGGGCGCCGGTTCGTGATG
CAGCTGACGTCGCTCGGTCGCGTCGTGATCTACCTGGTGATGGCGTTCCA
CACCGACGACGTGCTGCTGTACCCGCTCGTGTTCGGGGTGATGGTGCTGA
GCAAGACGTACGCCGTGTCGAAGTCGGCGCTGGTGCCGAGCGTGGTGCGC
AACGACGAGGAGCTCGTCGAG
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