mRNA_P-wetherbeei_contig21023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V1LLF9_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V1LLF9_9BACT) HSP 1 Score: 154 bits (390), Expect = 2.490e-43 Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 1
Query: 7 RQPYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLK 468
R PY+R L+ NLD+++IV++ + P +PGL+DRLL+MAE E ++AVI LNK DL + + E +Y +GYP +TS VTG GV EL+ L G RSAL GHSGVGKSSLL A+ ++ GEVS +NNKG+HTTT V+ Y+ E E+ DLPGLK
Sbjct: 27 RVPYIRRLSRNLDQVLIVASFKSPDLKPGLIDRLLVMAELEEVEAVICLNKADLLDNPAEAENIAAIYRNIGYPVVITSVVTGQGVKELQRMLQGKRSALAGHSGVGKSSLLNAMHKDVQVAVGEVSYSNNKGRHTTTQVKTYTLDEETELIDLPGLK 184
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A3M2FLB0_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2FLB0_9BACT) HSP 1 Score: 146 bits (368), Expect = 7.200e-40 Identity = 79/156 (50.64%), Postives = 108/156 (69.23%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDLDRQQGERYRL--LYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLK 468
PY+R L+ +LD+++IV++ Q+P + GL+DRLL+MAE E A+I LNK DL G+ ++ +Y +GYP ++TS +G GV L L+G RSA+ GHSGVGKSSLL A+ PEL TG VS A NKG+HTTT ++ Y+ E E+ DLPGLK
Sbjct: 43 PYIRRLSRSLDQVLIVASFQQPELKTGLIDRLLVMAELEERHALICLNKYDLLEHPGQAEQVAGIYRSIGYPVYITSAKSGKGVAALARALSGKRSAMAGHSGVGKSSLLNAINPELKVATGAVSYATNKGRHTTTQIKTYTLDEQTELIDLPGLK 198
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V5PMU6_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5PMU6_9BACT) HSP 1 Score: 143 bits (360), Expect = 1.160e-38 Identity = 79/157 (50.32%), Postives = 104/157 (66.24%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYS-TEWGEIFDLPGLKL 471
PY+R LA NLD+L+IV + P + GL+DR L++AE EN+ +I NK+DL D +QGE R +YS +GY LTS TG+G+ EL L G R+AL GHSGVGKSSLL A+ P L +VS KG+HTTT V++Y + E+ DLPG+KL
Sbjct: 43 PYIRKLARNLDQLLIVGSFVSPPLKLGLIDRFLVLAEIENIDPLICFNKVDLLSDARQGEEVREIYSRIGYRALLTSAKTGVGIGELAKALKGKRTALAGHSGVGKSSLLNAIDPNLQIMVNDVSHVTRKGRHTTTRVKVYHFDDQTEVIDLPGIKL 199
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: H1XPY7_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=Caldithrix abyssi DSM 13497 TaxID=880073 RepID=H1XPY7_9BACT) HSP 1 Score: 142 bits (357), Expect = 3.990e-38 Identity = 78/157 (49.68%), Postives = 105/157 (66.88%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGR-SALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWG-EIFDLPGLKL 471
P++R LA N+D+L+IVS+ EP + GL+DR L++AE E L+A+I LNK+DL D + + +Y +GYP +LTS +G G+ EL L G +AL GHSGVGKSSLL A+APEL EVS + KG+HTTT V++Y + DLPGLKL
Sbjct: 49 PFIRRLARNIDQLLIVSSFVEPPIKTGLIDRFLVLAELEQLKAIICLNKIDLLEDLSEAQEIAEMYRKIGYPVYLTSASSGEGIHELFEALKGHDTALAGHSGVGKSSLLNAMAPELKIHVNEVSPSTKKGRHTTTRVKVYEMAPATRVIDLPGLKL 205
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7C2EZN7_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix sp. TaxID=1962856 RepID=A0A7C2EZN7_9BACT) HSP 1 Score: 141 bits (356), Expect = 4.480e-38 Identity = 74/157 (47.13%), Postives = 108/157 (68.79%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWG-EIFDLPGLKL 471
PY+R LAPNLD+++IVS+ P +PGLVDRLL++AE E+++ +I NK DL D ++ + +Y +GY TF +S + E+ L G R+AL GHSGVGKSSLL A+AP+L + EVS + NKGQHTTT +++++ + ++ DLPG+KL
Sbjct: 43 PYIRKLAPNLDQILIVSSFVTPPVKPGLVDRLLVLAEVESIKPIICFNKTDLLEDPEEAKEIVSVYRNIGYATFASSVKNNESIEEIHELLKGKRTALAGHSGVGKSSLLNAMAPQLKLRVNEVSRSTNKGQHTTTKIKIFTLDKKTQVIDLPGVKL 199
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V4UEF8_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V4UEF8_9BACT) HSP 1 Score: 137 bits (345), Expect = 1.960e-36 Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLKL 471
P++R LA NLD+LVIVS+ P + GL+DR L++ E ENL AV+ LNK DL + QQ E +Y +GY T +TS G+ L + + RSA GHSGVGKSSLL A+ P+L Q EVS NKG+HTTT VR+Y+ E E+ DLPG+K+
Sbjct: 43 PFVRRLARNLDQLVIVSSFASPPLKTGLIDRFLVLTELENLHAVVCLNKSDLADNPQQVEEIAQIYRNIGYDTVVTSAKKPEGIEALYALIKNKRSAFAGHSGVGKSSLLNAINPDLQIQVDEVSSYTNKGKHTTTKVRIYTVDEHTEVLDLPGIKI 199
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A836RRL6_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A836RRL6_9BACT) HSP 1 Score: 136 bits (342), Expect = 4.850e-36 Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTE-WGEIFDLPGLKL 471
P++R + NLD+LVIVS+ P + GL+DR L++ E ENL AV+ LNK DL R++ E+ +Y+ +GY T +TS G+ L + L RSA GHSGVGKSSLL A+ PEL Q EVS NKG+HTTT +R+Y+ + E+ DLPG+K+
Sbjct: 38 PFVRRMTRNLDQLVIVSSFASPPLKTGLIDRFLVLTELENLHAVVCLNKSDLAGSRKEVEKIAKIYADIGYDTAVTSAKKKEGIDALYTLLKNKRSAFAGHSGVGKSSLLNAINPELRIQVEEVSTTTNKGRHTTTKIRIYTLDKHTEVLDLPGIKI 194
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V5LJX2_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5LJX2_9BACT) HSP 1 Score: 136 bits (342), Expect = 5.930e-36 Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 1
Query: 13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGR-SALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLKL 471
P++R LA N+D+L+IVS+ EP + GL+DR L++AE E L A+I LNK+DL + + E +Y +GYP FLTS G G+ L L + +AL GHSGVGKSSLL A+ PEL EVS + KG+HTTT +++Y E + DLPG+KL
Sbjct: 43 PFIRKLAKNIDQLLIVSSFVEPPLKTGLIDRFLVLAELEQLDALICLNKIDLLDNVAKAEEIAEIYRRIGYPVFLTSANNGQGIQPLFDALKNKVTALAGHSGVGKSSLLNAMVPELKIHVNEVSPSTKKGRHTTTRIKVYELDEQTRVIDLPGIKL 199
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7X9FCZ8_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7X9FCZ8_9BACT) HSP 1 Score: 134 bits (337), Expect = 8.440e-35 Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 1
Query: 7 RQPYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDLDR-QQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLKL 471
R+ +LA N+D LVIV+++ EP RPGL+DR LI AE +L IV+NK DL+ + E +Y GLGY F+TSTV+G+G+ +LR L RS CGHSGVGKSSLL L P ++ +T VS KG+HTT+S+ L+ + G + D PGLK+
Sbjct: 80 RETSEHVLAANVDSLVIVASVAEPVLRPGLIDRFLIAAEAGHLTPAIVINKADLETTSETEEVIAVYRGLGYELFVTSTVSGIGLDDLRRFLKDHRSLFCGHSGVGKSSLLNQLLPGISLRTSNVSAVTGKGRHTTSSMELFHLPDGGFVIDTPGLKV 237
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A1W9S697_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=unclassified candidate division Zixibacteria TaxID=2751484 RepID=A0A1W9S697_9BACT) HSP 1 Score: 134 bits (336), Expect = 9.470e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 22 RLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDLDRQQG-ERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGR-SALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWGE-IFDLPGLKL 471
+++A N+D+LVI+++ +P F+PGLVDR L+ AE ENL++VI++NK+DL E Y L +S LGY TS T +G+ + L R SAL GHSGVGKSSLL A+ P L T EVS + +KG H TT+VR+Y ++G + D PGLKL
Sbjct: 81 QVIASNIDQLVIITSTIKPRFKPGLVDRFLVSAEYENLKSVIIINKIDLVPPDNYESYALTWSSLGYDVAFTSAKTKVGLDDFMKFLKDRTSALAGHSGVGKSSLLNAIQPSLDLHTREVSQSTDKGVHATTTVRMYPLDFGGWVIDTPGLKL 233 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig21023.1.1 >prot_P-wetherbeei_contig21023.1.1 ID=prot_P-wetherbeei_contig21023.1.1|Name=mRNA_P-wetherbeei_contig21023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp PSRQPYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVback to top mRNA from alignment at P-wetherbeei_contig21023:3..631- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig21023.1.1 ID=mRNA_P-wetherbeei_contig21023.1.1|Name=mRNA_P-wetherbeei_contig21023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=629bp|location=Sequence derived from alignment at P-wetherbeei_contig21023:3..631- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig21023:3..631- >mRNA_P-wetherbeei_contig21023.1.1 ID=mRNA_P-wetherbeei_contig21023.1.1|Name=mRNA_P-wetherbeei_contig21023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig21023:3..631- (Phaeothamnion wetherbeei SAG_119_79)back to top |