mRNA_P-wetherbeei_contig21023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21023.1.1
Unique NamemRNA_P-wetherbeei_contig21023.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V1LLF9_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V1LLF9_9BACT)

HSP 1 Score: 154 bits (390), Expect = 2.490e-43
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 1
Query:    7 RQPYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLK 468
            R PY+R L+ NLD+++IV++ + P  +PGL+DRLL+MAE E ++AVI LNK DL  +  + E    +Y  +GYP  +TS VTG GV EL+  L G RSAL GHSGVGKSSLL A+  ++    GEVS +NNKG+HTTT V+ Y+  E  E+ DLPGLK
Sbjct:   27 RVPYIRRLSRNLDQVLIVASFKSPDLKPGLIDRLLVMAELEEVEAVICLNKADLLDNPAEAENIAAIYRNIGYPVVITSVVTGQGVKELQRMLQGKRSALAGHSGVGKSSLLNAMHKDVQVAVGEVSYSNNKGRHTTTQVKTYTLDEETELIDLPGLK 184          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A3M2FLB0_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2FLB0_9BACT)

HSP 1 Score: 146 bits (368), Expect = 7.200e-40
Identity = 79/156 (50.64%), Postives = 108/156 (69.23%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDLDRQQGERYRL--LYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLK 468
            PY+R L+ +LD+++IV++ Q+P  + GL+DRLL+MAE E   A+I LNK DL    G+  ++  +Y  +GYP ++TS  +G GV  L   L+G RSA+ GHSGVGKSSLL A+ PEL   TG VS A NKG+HTTT ++ Y+  E  E+ DLPGLK
Sbjct:   43 PYIRRLSRSLDQVLIVASFQQPELKTGLIDRLLVMAELEERHALICLNKYDLLEHPGQAEQVAGIYRSIGYPVYITSAKSGKGVAALARALSGKRSAMAGHSGVGKSSLLNAINPELKVATGAVSYATNKGRHTTTQIKTYTLDEQTELIDLPGLK 198          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V5PMU6_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5PMU6_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.160e-38
Identity = 79/157 (50.32%), Postives = 104/157 (66.24%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYS-TEWGEIFDLPGLKL 471
            PY+R LA NLD+L+IV +   P  + GL+DR L++AE EN+  +I  NK+DL  D +QGE  R +YS +GY   LTS  TG+G+ EL   L G R+AL GHSGVGKSSLL A+ P L     +VS    KG+HTTT V++Y   +  E+ DLPG+KL
Sbjct:   43 PYIRKLARNLDQLLIVGSFVSPPLKLGLIDRFLVLAEIENIDPLICFNKVDLLSDARQGEEVREIYSRIGYRALLTSAKTGVGIGELAKALKGKRTALAGHSGVGKSSLLNAIDPNLQIMVNDVSHVTRKGRHTTTRVKVYHFDDQTEVIDLPGIKL 199          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: H1XPY7_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=Caldithrix abyssi DSM 13497 TaxID=880073 RepID=H1XPY7_9BACT)

HSP 1 Score: 142 bits (357), Expect = 3.990e-38
Identity = 78/157 (49.68%), Postives = 105/157 (66.88%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGR-SALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWG-EIFDLPGLKL 471
            P++R LA N+D+L+IVS+  EP  + GL+DR L++AE E L+A+I LNK+DL  D  + +    +Y  +GYP +LTS  +G G+ EL   L G  +AL GHSGVGKSSLL A+APEL     EVS +  KG+HTTT V++Y       + DLPGLKL
Sbjct:   49 PFIRRLARNIDQLLIVSSFVEPPIKTGLIDRFLVLAELEQLKAIICLNKIDLLEDLSEAQEIAEMYRKIGYPVYLTSASSGEGIHELFEALKGHDTALAGHSGVGKSSLLNAMAPELKIHVNEVSPSTKKGRHTTTRVKVYEMAPATRVIDLPGLKL 205          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7C2EZN7_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix sp. TaxID=1962856 RepID=A0A7C2EZN7_9BACT)

HSP 1 Score: 141 bits (356), Expect = 4.480e-38
Identity = 74/157 (47.13%), Postives = 108/157 (68.79%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWG-EIFDLPGLKL 471
            PY+R LAPNLD+++IVS+   P  +PGLVDRLL++AE E+++ +I  NK DL  D ++ +    +Y  +GY TF +S      + E+   L G R+AL GHSGVGKSSLL A+AP+L  +  EVS + NKGQHTTT +++++ +   ++ DLPG+KL
Sbjct:   43 PYIRKLAPNLDQILIVSSFVTPPVKPGLVDRLLVLAEVESIKPIICFNKTDLLEDPEEAKEIVSVYRNIGYATFASSVKNNESIEEIHELLKGKRTALAGHSGVGKSSLLNAMAPQLKLRVNEVSRSTNKGQHTTTKIKIFTLDKKTQVIDLPGVKL 199          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V4UEF8_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V4UEF8_9BACT)

HSP 1 Score: 137 bits (345), Expect = 1.960e-36
Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLKL 471
            P++R LA NLD+LVIVS+   P  + GL+DR L++ E ENL AV+ LNK DL  + QQ E    +Y  +GY T +TS     G+  L + +   RSA  GHSGVGKSSLL A+ P+L  Q  EVS   NKG+HTTT VR+Y+  E  E+ DLPG+K+
Sbjct:   43 PFVRRLARNLDQLVIVSSFASPPLKTGLIDRFLVLTELENLHAVVCLNKSDLADNPQQVEEIAQIYRNIGYDTVVTSAKKPEGIEALYALIKNKRSAFAGHSGVGKSSLLNAINPDLQIQVDEVSSYTNKGKHTTTKVRIYTVDEHTEVLDLPGIKI 199          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A836RRL6_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A836RRL6_9BACT)

HSP 1 Score: 136 bits (342), Expect = 4.850e-36
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTE-WGEIFDLPGLKL 471
            P++R +  NLD+LVIVS+   P  + GL+DR L++ E ENL AV+ LNK DL   R++ E+   +Y+ +GY T +TS     G+  L + L   RSA  GHSGVGKSSLL A+ PEL  Q  EVS   NKG+HTTT +R+Y+ +   E+ DLPG+K+
Sbjct:   38 PFVRRMTRNLDQLVIVSSFASPPLKTGLIDRFLVLTELENLHAVVCLNKSDLAGSRKEVEKIAKIYADIGYDTAVTSAKKKEGIDALYTLLKNKRSAFAGHSGVGKSSLLNAINPELRIQVEEVSTTTNKGRHTTTKIRIYTLDKHTEVLDLPGIKI 194          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7V5LJX2_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5LJX2_9BACT)

HSP 1 Score: 136 bits (342), Expect = 5.930e-36
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 1
Query:   13 PYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDL--DRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGR-SALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLKL 471
            P++R LA N+D+L+IVS+  EP  + GL+DR L++AE E L A+I LNK+DL  +  + E    +Y  +GYP FLTS   G G+  L   L  + +AL GHSGVGKSSLL A+ PEL     EVS +  KG+HTTT +++Y   E   + DLPG+KL
Sbjct:   43 PFIRKLAKNIDQLLIVSSFVEPPLKTGLIDRFLVLAELEQLDALICLNKIDLLDNVAKAEEIAEIYRRIGYPVFLTSANNGQGIQPLFDALKNKVTALAGHSGVGKSSLLNAMVPELKIHVNEVSPSTKKGRHTTTRIKVYELDEQTRVIDLPGIKL 199          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A7X9FCZ8_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7X9FCZ8_9BACT)

HSP 1 Score: 134 bits (337), Expect = 8.440e-35
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    7 RQPYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDLDR-QQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAG-RSALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYST-EWGEIFDLPGLKL 471
            R+    +LA N+D LVIV+++ EP  RPGL+DR LI AE  +L   IV+NK DL+   + E    +Y GLGY  F+TSTV+G+G+ +LR  L   RS  CGHSGVGKSSLL  L P ++ +T  VS    KG+HTT+S+ L+   + G + D PGLK+
Sbjct:   80 RETSEHVLAANVDSLVIVASVAEPVLRPGLIDRFLIAAEAGHLTPAIVINKADLETTSETEEVIAVYRGLGYELFVTSTVSGIGLDDLRRFLKDHRSLFCGHSGVGKSSLLNQLLPGISLRTSNVSAVTGKGRHTTSSMELFHLPDGGFVIDTPGLKV 237          
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Match: A0A1W9S697_9BACT (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=unclassified candidate division Zixibacteria TaxID=2751484 RepID=A0A1W9S697_9BACT)

HSP 1 Score: 134 bits (336), Expect = 9.470e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 1
Query:   22 RLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIVLNKLDLDRQQG-ERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGR-SALCGHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWGE-IFDLPGLKL 471
            +++A N+D+LVI+++  +P F+PGLVDR L+ AE ENL++VI++NK+DL      E Y L +S LGY    TS  T +G+ +    L  R SAL GHSGVGKSSLL A+ P L   T EVS + +KG H TT+VR+Y  ++G  + D PGLKL
Sbjct:   81 QVIASNIDQLVIITSTIKPRFKPGLVDRFLVSAEYENLKSVIIINKIDLVPPDNYESYALTWSSLGYDVAFTSAKTKVGLDDFMKFLKDRTSALAGHSGVGKSSLLNAIQPSLDLHTREVSQSTDKGVHATTTVRMYPLDFGGWVIDTPGLKL 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V1LLF9_9BACT2.490e-4353.16Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A3M2FLB0_9BACT7.200e-4050.64Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A7V5PMU6_9BACT1.160e-3850.32Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
H1XPY7_9BACT3.990e-3849.68Small ribosomal subunit biogenesis GTPase RsgA n=2... [more]
A0A7C2EZN7_9BACT4.480e-3847.13Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A7V4UEF8_9BACT1.960e-3649.68Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A836RRL6_9BACT4.850e-3647.77Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A7V5LJX2_9BACT5.930e-3647.77Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A7X9FCZ8_9BACT8.440e-3548.10Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A1W9S697_9BACT9.470e-3549.02Small ribosomal subunit biogenesis GTPase RsgA n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21023contigP-wetherbeei_contig21023:3..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog880073.Calab_1492
Preferred namersgA
PFAMsRsgA_GTPase,RsgA_N
Model size629
Max annot lvl2|Bacteria
KEGG rclassRC00002,RC00017
KEGG koko:K06949
KEGG ReactionR00615,R02135
KEGG Pathwayko00730,ko01100,map00730,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.55e-39
EggNOG OGsCOG1162@1|root,COG1162@2|Bacteria,2NPJF@2323|unclassified Bacteria
EC3.1.3.100
DescriptionOne of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
Cds size627
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.0300002-CDS-P-wetherbeei_contig21023:4..6311683186215.0300002-CDS-P-wetherbeei_contig21023:4..631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21023 5..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21023.1.1prot_P-wetherbeei_contig21023.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21023 5..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21023.1.1

>prot_P-wetherbeei_contig21023.1.1 ID=prot_P-wetherbeei_contig21023.1.1|Name=mRNA_P-wetherbeei_contig21023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
PSRQPYLRLLAPNLDRLVIVSALQEPAFRPGLVDRLLIMAEQENLQAVIV
LNKLDLDRQQGERYRLLYSGLGYPTFLTSTVTGLGVPELRSQLAGRSALC
GHSGVGKSSLLRALAPELTPQTGEVSLANNKGQHTTTSVRLYSTEWGEIF
DLPGLKLAPLTMEPTPTGAIFPNLAPVGVGFVTACTVRKAGAGSWLLWRA
ASWIRSGMI
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mRNA from alignment at P-wetherbeei_contig21023:3..631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21023.1.1 ID=mRNA_P-wetherbeei_contig21023.1.1|Name=mRNA_P-wetherbeei_contig21023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=629bp|location=Sequence derived from alignment at P-wetherbeei_contig21023:3..631- (Phaeothamnion wetherbeei SAG_119_79)
CCCAGCCGCCAGCCTTATCTGCGCCTGCTCGCCCCCAATCTCGACCGACT CGTGATCGTCTCGGCGCTCCAGGAGCCCGCATTTCGGCCCGGGCTCGTCG ATCGTCTGCTCATTATGGCCGAACAGGAAAATCTCCAGGCCGTTATTGTG CTCAACAAACTCGACCTGGACCGGCAGCAGGGAGAGCGCTATCGCCTTCT CTACAGTGGCCTGGGTTACCCGACCTTCCTGACCTCCACCGTCACGGGGC TGGGAGTTCCCGAGCTCCGCTCCCAGCTGGCGGGCAGATCCGCACTGTGC GGTCATTCGGGAGTGGGCAAAAGCAGCTTGCTGCGCGCTCTCGCTCCTGA ACTGACCCCTCAGACCGGAGAGGTCAGTCTGGCCAACAACAAGGGGCAGC ACACGACCACTTCGGTCCGTCTCTACTCCACGGAATGGGGGGAAATCTTC GATCTCCCCGGGCTGAAGCTGGCCCCCCTGACCATGGAACCGACACCGAC AGGCGCTATTTTCCCGAATTTAGCGCCTGTCGGTGTCGGTTTCGTGACTG CCTGCACGGTCAGGAAAGCGGGTGCGGGGTCCTGGCTGCTCTGGAGGGCG GCCTCGTGGATTCGGAGCGGTATGATTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21023:3..631-

>mRNA_P-wetherbeei_contig21023.1.1 ID=mRNA_P-wetherbeei_contig21023.1.1|Name=mRNA_P-wetherbeei_contig21023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig21023:3..631- (Phaeothamnion wetherbeei SAG_119_79)
CCCAGCCGCCAGCCTTATCTGCGCCTGCTCGCCCCCAATCTCGACCGACT
CGTGATCGTCTCGGCGCTCCAGGAGCCCGCATTTCGGCCCGGGCTCGTCG
ATCGTCTGCTCATTATGGCCGAACAGGAAAATCTCCAGGCCGTTATTGTG
CTCAACAAACTCGACCTGGACCGGCAGCAGGGAGAGCGCTATCGCCTTCT
CTACAGTGGCCTGGGTTACCCGACCTTCCTGACCTCCACCGTCACGGGGC
TGGGAGTTCCCGAGCTCCGCTCCCAGCTGGCGGGCAGATCCGCACTGTGC
GGTCATTCGGGAGTGGGCAAAAGCAGCTTGCTGCGCGCTCTCGCTCCTGA
ACTGACCCCTCAGACCGGAGAGGTCAGTCTGGCCAACAACAAGGGGCAGC
ACACGACCACTTCGGTCCGTCTCTACTCCACGGAATGGGGGGAAATCTTC
GATCTCCCCGGGCTGAAGCTGGCCCCCCTGACCATGGAACCGACACCGAC
AGGCGCTATTTTCCCGAATTTAGCGCCTGTCGGTGTCGGTTTCGTGACTG
CCTGCACGGTCAGGAAAGCGGGTGCGGGGTCCTGGCTGCTCTGGAGGGCG
GCCTCGTGGATTCGGAGCGGTATGATT
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