mRNA_P-wetherbeei_contig20602.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20602.2.1
Unique NamemRNA_P-wetherbeei_contig20602.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A7C6YWR3_9FIRM (Nucleoid-associated protein GX528_08470 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6YWR3_9FIRM)

HSP 1 Score: 90.5 bits (223), Expect = 5.840e-22
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            +AG G + V VNGHQ+V S+KI+P AVDPED+EMLEDL++ AVNDG+ K+K ++G ++  +T GL    +PPGLF
Sbjct:   32 TAGGGVVTVVVNGHQEVQSVKIEPDAVDPEDVEMLEDLVLAAVNDGLRKAKELSGSEIEKVTGGLNLPGMPPGLF 106          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A7C6INU9_9CLOT (Nucleoid-associated protein GXZ55_04270 n=1 Tax=Natronincola sp. TaxID=2699832 RepID=A0A7C6INU9_9CLOT)

HSP 1 Score: 85.9 bits (211), Expect = 3.890e-20
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            +AG G I V VNGHQ +  IKIDP AVDPED+EMLEDLI+ AVNDGI KS+ ++ +++  +T  +    LPPGLF
Sbjct:   32 TAGGGVITVIVNGHQDIREIKIDPDAVDPEDVEMLEDLILAAVNDGIRKSRELSANELEKVTGQVNLQGLPPGLF 106          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A535MQW2_9CHLR (Nucleoid-associated protein E6J01_01575 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535MQW2_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 4.110e-20
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            SAG G + V  NGHQ+V+S+ + P+ VDP D++ML+DL++ AVND +EK++ +   +MG LT GL GL LPPGL 
Sbjct:   33 SAGGGMVTVVANGHQKVLSVTVKPEVVDPGDVDMLQDLVLAAVNDALEKARDLAAREMGTLTGGLGGLGLPPGLM 107          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A154BUS1_ANASB (Nucleoid-associated protein AXX12_17030 n=1 Tax=Anaerosporomusa subterranea TaxID=1794912 RepID=A0A154BUS1_ANASB)

HSP 1 Score: 84.3 bits (207), Expect = 1.800e-19
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            +AG GA+KV +NG +Q+ SIKI+P AVDPED+EMLEDL++ AVN+ I+K   +T  +MG LT GL    LPPG+ 
Sbjct:   40 TAGGGAVKVVINGEKQLQSIKINPSAVDPEDVEMLEDLVLAAVNEAIKKVDDMTNQEMGKLTGGLN---LPPGML 111          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: UPI000B14B824 (YbaB/EbfC family nucleoid-associated protein n=1 Tax=Massilibacillus massiliensis TaxID=1806837 RepID=UPI000B14B824)

HSP 1 Score: 84.0 bits (206), Expect = 2.560e-19
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            SAG GAIKV +NG +Q+ S+KIDP AVDP DIEMLEDL+  AVN+ I K   +   +MG LT    GL LPPG+F
Sbjct:   40 SAGGGAIKVVINGEKQIQSLKIDPSAVDPADIEMLEDLVAAAVNEAIRKVDDMMSQEMGKLTG---GLGLPPGMF 111          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A2V2Z4P1_9BACL (Nucleoid-associated protein DFQ01_105281 n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A2V2Z4P1_9BACL)

HSP 1 Score: 83.6 bits (205), Expect = 2.930e-19
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            +AG G + V+VNGH+QV+SI I P+AVDPEDIEML+DL+MTAVND + K++ +  D M   T GLK     PGLF
Sbjct:   33 TAGGGVVTVQVNGHKQVLSINIKPEAVDPEDIEMLQDLVMTAVNDALTKAEELANDDMSKYTGGLK----IPGLF 103          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A7C6RCJ3_9FIRM (Nucleoid-associated protein GX407_09725 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6RCJ3_9FIRM)

HSP 1 Score: 83.2 bits (204), Expect = 3.940e-19
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            SAG G + V VNG  QV+ +KIDP AVDP+D+EMLEDL+M A N+ + +++++  ++MG LT GLK   LPPGL 
Sbjct:   30 SAGGGVVTVTVNGENQVVGVKIDPDAVDPDDVEMLEDLVMAATNEALRRAQAMVAEEMGKLTGGLK---LPPGLI 101          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: E0IDD2_9BACL (Nucleoid-associated protein PaecuDRAFT_3636 n=3 Tax=Paenibacillus TaxID=44249 RepID=E0IDD2_9BACL)

HSP 1 Score: 83.2 bits (204), Expect = 4.160e-19
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            SAG G + VKVNGH+QV+SI I P+ VDPEDIEML+DL++TAVND + K++ +  + MG  T G+K     PGLF
Sbjct:   33 SAGGGVVNVKVNGHKQVLSITIKPEVVDPEDIEMLQDLVITAVNDALAKAEEMANEDMGKYTGGMK----IPGLF 103          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A0K8JED3_9FIRM (Nucleoid-associated protein P22_1732 n=1 Tax=Propionispora sp. 2/2-37 TaxID=1677858 RepID=A0A0K8JED3_9FIRM)

HSP 1 Score: 82.8 bits (203), Expect = 7.300e-19
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            S+G GAIK+ +NG +Q+ S+KI+P AVDP+D+EMLEDLI  AVN+ I+K   +   +MG LT GL    LPPGLF
Sbjct:   40 SSGGGAIKIIINGEKQIQSVKIEPSAVDPQDVEMLEDLIAAAVNEAIKKVDDMMAAEMGKLTGGLN---LPPGLF 111          
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Match: A0A1H8Y4E9_9FIRM (Nucleoid-associated protein SAMN04490178_14223 n=4 Tax=root TaxID=1 RepID=A0A1H8Y4E9_9FIRM)

HSP 1 Score: 82.8 bits (203), Expect = 7.300e-19
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKSKSVTGDKMGALTQGLKGLPLPPGLF 225
            S+G GA+K+ + G +Q+ S+KIDP AVDPEDIEMLEDLI  AVN+ I+K   +   +MG LT GL    LPPG+F
Sbjct:   40 SSGGGAVKIVITGEKQIQSVKIDPGAVDPEDIEMLEDLIAAAVNEAIKKVDDMMAQEMGKLTGGLN---LPPGMF 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20602.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C6YWR3_9FIRM5.840e-2256.00Nucleoid-associated protein GX528_08470 n=1 Tax=Fi... [more]
A0A7C6INU9_9CLOT3.890e-2057.33Nucleoid-associated protein GXZ55_04270 n=1 Tax=Na... [more]
A0A535MQW2_9CHLR4.110e-2052.00Nucleoid-associated protein E6J01_01575 n=1 Tax=Ch... [more]
A0A154BUS1_ANASB1.800e-1956.00Nucleoid-associated protein AXX12_17030 n=1 Tax=An... [more]
UPI000B14B8242.560e-1958.67YbaB/EbfC family nucleoid-associated protein n=1 T... [more]
A0A2V2Z4P1_9BACL2.930e-1957.33Nucleoid-associated protein DFQ01_105281 n=2 Tax=P... [more]
A0A7C6RCJ3_9FIRM3.940e-1953.33Nucleoid-associated protein GX407_09725 n=1 Tax=Fi... [more]
E0IDD2_9BACL4.160e-1956.00Nucleoid-associated protein PaecuDRAFT_3636 n=3 Ta... [more]
A0A0K8JED3_9FIRM7.300e-1956.00Nucleoid-associated protein P22_1732 n=1 Tax=Propi... [more]
A0A1H8Y4E9_9FIRM7.300e-1956.00Nucleoid-associated protein SAMN04490178_14223 n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20602contigP-wetherbeei_contig20602:986..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog717606.PaecuDRAFT_3636
Preferred nameyaaK
PFAMsYbaB_DNA_bd
Model size228
Max annot lvl91061|Bacilli
KEGG koko:K09747
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.82e-20
EggNOG OGsCOG0718@1|root,COG0718@2|Bacteria,1VA1S@1239|Firmicutes,4HKH3@91061|Bacilli,26Y4X@186822|Paenibacillaceae
DescriptionBinds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Cds size228
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.3505342-CDS-P-wetherbeei_contig20602:985..12131683186204.3505342-CDS-P-wetherbeei_contig20602:985..1213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20602 986..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20602.2.1prot_P-wetherbeei_contig20602.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20602 986..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20602.2.1

>prot_P-wetherbeei_contig20602.2.1 ID=prot_P-wetherbeei_contig20602.2.1|Name=mRNA_P-wetherbeei_contig20602.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
SAGQGAIKVKVNGHQQVMSIKIDPKAVDPEDIEMLEDLIMTAVNDGIEKS
KSVTGDKMGALTQGLKGLPLPPGLF*
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mRNA from alignment at P-wetherbeei_contig20602:986..1213-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20602.2.1 ID=mRNA_P-wetherbeei_contig20602.2.1|Name=mRNA_P-wetherbeei_contig20602.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig20602:986..1213- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCGGTCAGGGAGCCATCAAAGTCAAGGTCAACGGTCACCAGCAGGT TATGTCGATCAAGATCGATCCCAAAGCGGTCGATCCTGAAGATATCGAAA TGCTCGAAGACCTCATTATGACGGCCGTCAATGATGGTATCGAAAAATCC AAGTCCGTCACCGGCGACAAAATGGGTGCGCTGACGCAAGGTCTTAAGGG TCTGCCGCTACCGCCCGGATTGTTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20602:986..1213-

>mRNA_P-wetherbeei_contig20602.2.1 ID=mRNA_P-wetherbeei_contig20602.2.1|Name=mRNA_P-wetherbeei_contig20602.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig20602:986..1213- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCGGTCAGGGAGCCATCAAAGTCAAGGTCAACGGTCACCAGCAGGT
TATGTCGATCAAGATCGATCCCAAAGCGGTCGATCCTGAAGATATCGAAA
TGCTCGAAGACCTCATTATGACGGCCGTCAATGATGGTATCGAAAAATCC
AAGTCCGTCACCGGCGACAAAATGGGTGCGCTGACGCAAGGTCTTAAGGG
TCTGCCGCTACCGCCCGGATTGTTCTAA
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