mRNA_P-wetherbeei_contig206.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig206.3.1
Unique NamemRNA_P-wetherbeei_contig206.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig206.3.1 vs. uniprot
Match: A0A836CH18_9STRA (HMA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH18_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.770e-8
Identity = 66/210 (31.43%), Postives = 93/210 (44.29%), Query Frame = 2 
Query:  266 QLLFNTFGWGCLGFRSLERGRSLYLAIHAMAIALLWLRKAGAARQSTGGCDCGSAPTSSRGDLAGR---LASSFLLLALAFSEHGVRFINDRGGLRALLKAACSVSRRPVLVAPGTATHAGIAVAWPAAMKQDGPALKPAVVHLENATLCAEETE--VVAMSREGETLELRV--LRFNIAGMKCEGCRHGVLSALTAHKWVASAEVKLGG 874
            QL+ N  G GC GFR LE  + ++LA++A+A+A    R   AA  S+G    G+  + +     GR   LA +   L+L FSE  +R  N+RG     ++      R P   +P   T                           +A +CA E    V     EGE +  RV  +   I GM+CEGCR GV+SAL A   V +  V + G
Sbjct:   46 QLVLNLLGTGCAGFRKLEAYKPVWLALNAVALA----RCCSAAAISSG--PLGALRSRAMALTHGRWRKLAITLFCLSLTFSEDALRAWNNRG-----VRRGGKPPRLPSESSPAAPTL--------------------------DAAVCAAEARHGVTLQVGEGEPVHERVDAVHLTIGGMRCEGCRRGVISALAAVPGVVTVTVSMAG 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig206.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CH18_9STRA1.770e-831.43HMA domain-containing protein (Fragment) n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig206contigP-wetherbeei_contig206:7773..8933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1161
Hectar predicted targeting categorysignal peptide
Exons1
Cds size915
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.1535797-UTR-P-wetherbeei_contig206:7772..78281683186204.1535797-UTR-P-wetherbeei_contig206:7772..7828Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig206 7773..7828 -
1683186204.1842308-UTR-P-wetherbeei_contig206:8743..89331683186204.1842308-UTR-P-wetherbeei_contig206:8743..8933Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig206 8744..8933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186204.1679707-CDS-P-wetherbeei_contig206:7828..87431683186204.1679707-CDS-P-wetherbeei_contig206:7828..8743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig206 7829..8743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig206.3.1prot_P-wetherbeei_contig206.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig206 7829..8743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig206.3.1

>prot_P-wetherbeei_contig206.3.1 ID=prot_P-wetherbeei_contig206.3.1|Name=mRNA_P-wetherbeei_contig206.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=305bp
MLLKVSRILPSLSCLLHFITALLSCQLLFNTFGWGCLGFRSLERGRSLYL
AIHAMAIALLWLRKAGAARQSTGGCDCGSAPTSSRGDLAGRLASSFLLLA
LAFSEHGVRFINDRGGLRALLKAACSVSRRPVLVAPGTATHAGIAVAWPA
AMKQDGPALKPAVVHLENATLCAEETEVVAMSREGETLELRVLRFNIAGM
KCEGCRHGVLSALTAHKWVASAEVKLGGNNDAAAAASAGICGQEQRLLGG
IASVTVTADAPDGSSLKLVEAVSRAGYTASLGDATEIGEEGGSASCPLDT
VFLQ*
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mRNA from alignment at P-wetherbeei_contig206:7773..8933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig206.3.1 ID=mRNA_P-wetherbeei_contig206.3.1|Name=mRNA_P-wetherbeei_contig206.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig206:7773..8933- (Phaeothamnion wetherbeei SAG_119_79)
TGCGTTCTGCAGGTATTGCGTTCTCATGGAGAACGTACATCACAGAAATA
TGGTTCTTATGAGTTCTGCAAAAGATCGCTACAAAGAAGTGCGTAGGAAG
AGATTTTCGCAAAGAGCTTTTTGGTCGCGATTTGTCATGGTATAATTTGG
CAACATCTGGGAGCGTCGGATCCCTGTTGCACACGATCGCATGCTGCTAA
AGGTGAGCCGCATCCTGCCCTCTTTGTCCTGTCTTCTCCATTTCATCACT
GCTCTCCTTTCCTGCCAGCTCTTGTTCAACACTTTTGGTTGGGGCTGCCT
AGGGTTTCGCAGCCTGGAGCGAGGTCGTTCCCTGTATCTCGCTATCCACG
CGATGGCGATCGCCCTGCTCTGGCTTCGCAAGGCGGGCGCCGCTCGCCAG
AGCACCGGAGGCTGCGATTGCGGCAGCGCGCCCACAAGCAGCCGCGGCGA
CCTTGCCGGCCGCCTGGCCAGCTCCTTCTTGCTGCTGGCGCTCGCATTTT
CCGAGCATGGCGTTCGATTCATCAACGACCGAGGAGGTCTCCGCGCTCTA
CTGAAGGCTGCTTGCAGTGTAAGTCGGCGACCGGTGCTCGTGGCACCTGG
GACGGCGACGCATGCCGGCATTGCGGTAGCGTGGCCTGCCGCCATGAAGC
AGGATGGTCCCGCATTGAAGCCTGCTGTGGTGCACTTAGAAAATGCGACT
CTTTGCGCGGAGGAGACCGAAGTCGTCGCCATGTCGAGGGAAGGAGAGAC
CCTTGAATTAAGAGTGCTGCGATTTAACATCGCTGGCATGAAGTGCGAAG
GCTGCCGGCACGGCGTGCTTTCGGCGCTGACGGCCCACAAGTGGGTAGCG
TCGGCCGAAGTTAAGCTCGGCGGTAACAACGACGCCGCCGCCGCCGCCAG
CGCCGGCATCTGTGGGCAGGAACAGCGGCTACTCGGCGGCATCGCCTCCG
TGACGGTGACTGCCGACGCGCCGGACGGCTCCAGCCTGAAGCTCGTCGAA
GCCGTCAGTCGAGCAGGGTACACTGCATCGCTGGGAGATGCTACCGAGAT
CGGGGAGGAAGGCGGTAGCGCCAGCTGTCCGTTGGACACGGTGTTCTTGC
AGTGAGCATGTAGAAAAGATTTAGAGAATTAGAATGTAATTTTAGCCCCT
CATCACTTAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig206:7773..8933-

>mRNA_P-wetherbeei_contig206.3.1 ID=mRNA_P-wetherbeei_contig206.3.1|Name=mRNA_P-wetherbeei_contig206.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig206:7773..8933- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTAAAGGTGAGCCGCATCCTGCCCTCTTTGTCCTGTCTTCTCCA
TTTCATCACTGCTCTCCTTTCCTGCCAGCTCTTGTTCAACACTTTTGGTT
GGGGCTGCCTAGGGTTTCGCAGCCTGGAGCGAGGTCGTTCCCTGTATCTC
GCTATCCACGCGATGGCGATCGCCCTGCTCTGGCTTCGCAAGGCGGGCGC
CGCTCGCCAGAGCACCGGAGGCTGCGATTGCGGCAGCGCGCCCACAAGCA
GCCGCGGCGACCTTGCCGGCCGCCTGGCCAGCTCCTTCTTGCTGCTGGCG
CTCGCATTTTCCGAGCATGGCGTTCGATTCATCAACGACCGAGGAGGTCT
CCGCGCTCTACTGAAGGCTGCTTGCAGTGTAAGTCGGCGACCGGTGCTCG
TGGCACCTGGGACGGCGACGCATGCCGGCATTGCGGTAGCGTGGCCTGCC
GCCATGAAGCAGGATGGTCCCGCATTGAAGCCTGCTGTGGTGCACTTAGA
AAATGCGACTCTTTGCGCGGAGGAGACCGAAGTCGTCGCCATGTCGAGGG
AAGGAGAGACCCTTGAATTAAGAGTGCTGCGATTTAACATCGCTGGCATG
AAGTGCGAAGGCTGCCGGCACGGCGTGCTTTCGGCGCTGACGGCCCACAA
GTGGGTAGCGTCGGCCGAAGTTAAGCTCGGCGGTAACAACGACGCCGCCG
CCGCCGCCAGCGCCGGCATCTGTGGGCAGGAACAGCGGCTACTCGGCGGC
ATCGCCTCCGTGACGGTGACTGCCGACGCGCCGGACGGCTCCAGCCTGAA
GCTCGTCGAAGCCGTCAGTCGAGCAGGGTACACTGCATCGCTGGGAGATG
CTACCGAGATCGGGGAGGAAGGCGGTAGCGCCAGCTGTCCGTTGGACACG
GTGTTCTTGCAGTGA
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