mRNA_P-wetherbeei_contig20208.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20208.1.1
Unique NamemRNA_P-wetherbeei_contig20208.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: UPI00188B9FFD (recombinase family protein n=1 Tax=Microbacterium sp. VKM Ac-2870 TaxID=2783825 RepID=UPI00188B9FFD)

HSP 1 Score: 385 bits (988), Expect = 1.070e-127
Identity = 194/279 (69.53%), Postives = 229/279 (82.08%), Query Frame = 1
Query:   19 GTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDAR 855
            G AV+YLRVST RQ+ TA DID DGNSIATQREA M RAKR K PV   FVEPG+SAQ+IA RPVFR++LHYIEEHPEVT V+IYMRSR FRN  DAAITKRILASM VKLISAKE+FGEGYMADAMEA+TDIMNEVQVRQSGEDI  K+LNKAK+GGT GRAKLGY+N R+  DG  VN I++D +RAPL+ WAF+QYATG+YS+ QL + L  LGL TR + K   +P+S + LA++LRDPYY G+VP+KG+VYPGRHE ++  E FE  Q+++D R
Sbjct:   41 GQAVIYLRVSTPRQMLTAIDIDADGNSIATQREACMVRAKRAKAPVVREFVEPGNSAQTIAKRPVFREMLHYIEEHPEVTCVVIYMRSRAFRNLADAAITKRILASMGVKLISAKEDFGEGYMADAMEAVTDIMNEVQVRQSGEDIKQKLLNKAKNGGTVGRAKLGYINDRKNFDGRLVNTISVDEERAPLITWAFDQYATGEYSVWQLAQALDGLGLKTRASHKRPAQPVSASALAKILRDPYYTGVVPFKGQVYPGRHEAIVDNETFEACQEILDRR 319          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: A0A3P1WYM2_9ACTN (Recombinase family protein n=1 Tax=Arachnia propionica TaxID=1750 RepID=A0A3P1WYM2_9ACTN)

HSP 1 Score: 345 bits (886), Expect = 8.890e-113
Identity = 174/249 (69.88%), Postives = 208/249 (83.53%), Query Frame = 1
Query:  124 MKRAKRLKVP--VAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDARMQR 864
            M  A+++  P  +A  FV PG SAQSIA RPVF++LL Y+E++P++ YV+IYMRSR FRN TDAAI KR+LA+M VKL+SAKEEFGEGYM DAMEAITDIMNEVQVRQ+GEDIS KM +KA++GGTTGRAKLGYLNVR++ DG  VN + +DP RAPL++WAFEQYATG+YSL  L  EL   GLTTRRTAKW ERPLSR++LA +LRDPYYIG V +KGEV+PGRH PL+S ELFERVQQV+D R +R
Sbjct:    1 MNGARKMLWPPAIAREFVGPGVSAQSIAKRPVFKELLRYVEDNPQIGYVVIYMRSRAFRNFTDAAIAKRVLATMGVKLVSAKEEFGEGYMGDAMEAITDIMNEVQVRQNGEDISNKMRHKAQNGGTTGRAKLGYLNVRKDFDGRLVNTVDVDPVRAPLIRWAFEQYATGEYSLAALTSELERQGLTTRRTAKWVERPLSRSQLALILRDPYYIGKVTFKGEVFPGRHVPLVSAELFERVQQVLDVRRRR 249          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: A0A349CT02_9MICO (Recombinase family protein (Fragment) n=2 Tax=Microbacterium TaxID=33882 RepID=A0A349CT02_9MICO)

HSP 1 Score: 344 bits (882), Expect = 4.220e-112
Identity = 175/281 (62.28%), Postives = 216/281 (76.87%), Query Frame = 1
Query:   13 GAGTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDAR 855
            G   AV+YLRVST RQL TA DID DGNSIATQR   +++ + L+  VA+ FVEPG SAQ+I+ R  F+ LL Y++EHP+V YV+IYMRSRVFRN TDAAITKR L    V+LISAKEEFGEGYMADAMEAITDIMNEVQVR +GED+  KM +K + GGT GRAKLGYLNVR++ +G  VN + +D +RAPL+ WAFEQYATG YS+ Q+   L E GLTTR +     + +SR+RLA +LR+PYY G++ YKG +Y GRHEPL+S E F +VQ+V+D R
Sbjct:   15 GLAQAVVYLRVSTPRQLHTAADIDEDGNSIATQRVEALRKVRELRATVAKEFVEPGQSAQTISKRTEFKRLLRYVDEHPQVKYVVIYMRSRVFRNFTDAAITKRQLLEKGVRLISAKEEFGEGYMADAMEAITDIMNEVQVRMNGEDVKVKMAHKVEQGGTVGRAKLGYLNVRKDFNGRLVNTVDVDYERAPLVAWAFEQYATGRYSISQMTHMLEERGLTTRPSPSRPAQAVSRSRLALILRNPYYTGVIRYKGSLYVGRHEPLVSKETFLKVQEVLDHR 295          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: A0A561EAD2_9MICO (DNA invertase Pin-like site-specific DNA recombinase n=1 Tax=Rudaeicoccus suwonensis TaxID=657409 RepID=A0A561EAD2_9MICO)

HSP 1 Score: 337 bits (865), Expect = 5.230e-111
Identity = 172/280 (61.43%), Postives = 216/280 (77.14%), Query Frame = 1
Query:   25 AVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDARMQR 864
            AV YLRVST RQ+    D+D +GNSIATQRE + K+A  L   + + FVEPG SAQ+I  RPVF+ +L Y+ EHPEV YVIIYMRSR FRN  DA +TKR L  + VKL+SAKE+FG+G MADAMEA+TDIMNEVQVR SGEDI  K+ +K ++GGTTGRAKLGYLNVR E DG  +N IA+D +RAPL+K AFE YATGDYSL +L   + +LG TTR + K+ ++P+S  +L  +LRDPYY+G+V YKGE +PGRHEP+I  +LF++VQQVM+ R +R
Sbjct:   18 AVTYLRVSTTRQMSAGADVDAEGNSIATQREWSAKKAVALGASLQQEFVEPGASAQTIEKRPVFKQMLAYLGEHPEVDYVIIYMRSRAFRNLGDAVMTKRTLERLGVKLVSAKEDFGDGIMADAMEAVTDIMNEVQVRLSGEDIKIKLRHKVENGGTTGRAKLGYLNVRVEHDGRLINSIALDQERAPLVKQAFELYATGDYSLERLHVAMADLGFTTRPSRKFAQQPVSIAKLHTMLRDPYYVGIVTYKGEQFPGRHEPIIDQDLFDQVQQVMNHRSKR 297          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: A0A2W6V6S8_9MICO (Recombinase family protein n=5 Tax=Microbacteriaceae TaxID=85023 RepID=A0A2W6V6S8_9MICO)

HSP 1 Score: 342 bits (876), Expect = 2.950e-110
Identity = 170/279 (60.93%), Postives = 215/279 (77.06%), Query Frame = 1
Query:   19 GTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDAR 855
            G A+ YLRVST RQL TA D+D DGNSIATQRE  +++AK L VP+   FVEPG SAQ+I  RP F+ LL +++ +P++ YV+IYMRSRVFRN  DAAITKR L    V+LISAKE FG+GYM DAMEAITD++NE+QVR SGEDI  KM +K + GG+ GRAKLGYLNVR++ DG  VN I +DP RAPL+ WAFEQYAT  +S+ QL   L + GLTTR+++K   +PLS ++LA +LRDPYY G++ YKG+++PGRH PLIS ELF  VQ+++D R
Sbjct:   90 GVAISYLRVSTTRQLNTAADLDEDGNSIATQREWVIRKAKELGVPILREFVEPGQSAQTIDKRPEFKKLLRFVDANPDIRYVVIYMRSRVFRNHLDAAITKRQLRDKGVELISAKENFGDGYMGDAMEAITDVVNELQVRMSGEDIRIKMAHKVERGGSVGRAKLGYLNVRKDFDGRLVNTIDVDPVRAPLIVWAFEQYATNQFSITQLQMMLEDQGLTTRQSSKRAAKPLSSSQLAMILRDPYYTGVIRYKGKLHPGRHTPLISKELFLAVQKILDGR 368          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: A0A4Q2M4A7_9MICO (Recombinase family protein n=1 Tax=Agromyces atrinae TaxID=592376 RepID=A0A4Q2M4A7_9MICO)

HSP 1 Score: 341 bits (874), Expect = 1.430e-109
Identity = 170/279 (60.93%), Postives = 215/279 (77.06%), Query Frame = 1
Query:   19 GTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDAR 855
            G A+ YLRVST RQL TA D+D DGNSIATQRE  +++AK L VP+   FVEPG SAQ+I  RP F+ LL +++ +P++ YV+IYMRSRVFRN  DAAITKR L    V+LISAKE FG+GYM DAMEAITD++NE+QVR SGEDI  KM +K + GG+ GRAKLGYLNVR++ DG  VN I +DP RAPL+ WAFEQYAT  +S+ QL   L + GLTTR+++K   +PLS ++LA +LRDPYY G++ YKG+++PGRH PLIS ELF  VQ+++D R
Sbjct:  124 GMAISYLRVSTTRQLNTAADLDEDGNSIATQREWAIRKAKELGVPILPEFVEPGQSAQTIDKRPEFKKLLRFVDANPDIRYVVIYMRSRVFRNHLDAAITKRQLRDKGVELISAKENFGDGYMGDAMEAITDVVNELQVRMSGEDIRIKMAHKVERGGSVGRAKLGYLNVRKDFDGRLVNTIDVDPVRAPLIVWAFEQYATNQFSITQLQMMLEDQGLTTRQSSKRAAKPLSSSQLAMILRDPYYTGVIRYKGKLHPGRHTPLISKELFLAVQKILDGR 402          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: A0A7I7VC28_MYCFA (Recombinase domain-containing protein n=2 Tax=Mycolicibacterium fallax TaxID=1793 RepID=A0A7I7VC28_MYCFA)

HSP 1 Score: 332 bits (852), Expect = 2.080e-109
Identity = 172/284 (60.56%), Postives = 213/284 (75.00%), Query Frame = 1
Query:   13 GAGTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDARMQR 864
            G   AV YLRVST RQ+ T  D+D +GNSIATQREA   +A R+   + + FVEPG SAQ+I  RP+F+ LL Y+ E+P+V+ VIIYMRSR FRN  DA ITKR L +M VKL+SAKE+FGEG MADAMEA+TDI+NEVQVR SGEDI  KM +KA+ GGT GRA +GY NVR E DG QVNGIA+D +RAPL+K AFE YATGDYS+ +L   + +LGL  R   + G + LSR+ L  +L DPYYIG+V YKGE +PGRH+P+I  +LFERVQ+V++ R  R
Sbjct:    8 GPQIAVSYLRVSTTRQMDTGADVDAEGNSIATQREANNAKAARMGALIEKEFVEPGASAQTIDKRPIFKQLLAYLGENPDVSLVIIYMRSRAFRNLGDAVITKRRLETMGVKLVSAKEDFGEGIMADAMEAVTDIINEVQVRMSGEDIKVKMRHKAQMGGTNGRAPIGYRNVRIEHDGRQVNGIAVDEERAPLIKQAFEMYATGDYSIDRLQETMADLGLRARPQGRGGAKELSRSHLHRMLSDPYYIGIVRYKGETFPGRHQPIIPADLFERVQKVIEDRSAR 291          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: UPI00131EFCFA (recombinase family protein n=1 Tax=Planctomonas deserti TaxID=2144185 RepID=UPI00131EFCFA)

HSP 1 Score: 339 bits (869), Expect = 2.600e-109
Identity = 173/281 (61.57%), Postives = 213/281 (75.80%), Query Frame = 1
Query:   13 GAGTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDAR 855
            G   AV YLRVST RQL TA D+D DGNSIATQR  TM++ + L VP A+ F+EPG SAQ+IA R  F+ LL Y+++HPEV YV+IYMRSRVFRN TDAAITKR L    V+LISAKEEFGEGYMADAMEAITDIMNEVQVR +GED++ KM +K + GG+ GRAKLGYLNVR++  G  VN I +DP+R PL+ WAFEQYATG YS+ +L R L   GL TR +     + +S +RLA +LRDPYY G+  YKG++Y GRHE L++ E + +VQ V+D+R
Sbjct:   39 GLAYAVTYLRVSTPRQLHTAADLDEDGNSIATQRVETMRKVRELGVPAAKEFIEPGQSAQTIAKRTEFKKLLRYVDDHPEVKYVVIYMRSRVFRNFTDAAITKRQLLEKGVRLISAKEEFGEGYMADAMEAITDIMNEVQVRMNGEDVAVKMAHKVEQGGSVGRAKLGYLNVRKDFGGRLVNTIDVDPERGPLVAWAFEQYATGRYSIARLQRLLEAQGLQTRPSPSNSAKTVSTSRLATILRDPYYTGINRYKGKLYVGRHEALVTKETYLKVQAVLDSR 319          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: UPI0018CE148F (recombinase family protein n=2 Tax=Corynebacteriales TaxID=85007 RepID=UPI0018CE148F)

HSP 1 Score: 335 bits (859), Expect = 1.600e-108
Identity = 173/284 (60.92%), Postives = 214/284 (75.35%), Query Frame = 1
Query:   13 GAGTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDARMQR 864
            G   AV YLRVST RQ+ T  D+D +GNSIATQREA   +A R+   + + FVEPG SAQ+I  RPVF+ LL Y+ EHP+V+ VIIYMRSR FRN  DA ITKR L +M VKL+SAKE+FGEG MADAMEA+TDI+NEVQVR SGEDI  KM +KA+ GGT GRA +GY NVR E +G QVNGIA+D +RAPL+K AFE YATGDYS+ +L   + +LGL  R   + G + LSR+ L  ++ DPYYIG+V YKGE +PGRH+P+IS +LFERVQ+V++ R  R
Sbjct:    8 GPQVAVSYLRVSTTRQMDTGADVDAEGNSIATQREANNAKAARMGAIIEKEFVEPGASAQTIDKRPVFKQLLAYLGEHPDVSLVIIYMRSRAFRNLGDAVITKRRLEAMGVKLVSAKEDFGEGIMADAMEAVTDIINEVQVRMSGEDIKVKMRHKAQMGGTNGRAPIGYRNVRIEHNGRQVNGIAVDEERAPLIKQAFEMYATGDYSIDRLQEAMADLGLRARPQGRGGAKELSRSHLHRMISDPYYIGIVRYKGETFPGRHQPIISADLFERVQKVIEDRSAR 291          
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Match: H5U6L1_9ACTN (Putative recombinase n=1 Tax=Gordonia sputi NBRC 100414 TaxID=1089453 RepID=H5U6L1_9ACTN)

HSP 1 Score: 333 bits (855), Expect = 6.770e-108
Identity = 173/284 (60.92%), Postives = 213/284 (75.00%), Query Frame = 1
Query:   13 GAGTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKVPVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQTDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGEDISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKWAFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPYYIGMVPYKGEVYPGRHEPLISPELFERVQQVMDARMQR 864
            G   AV YLRVST RQ+ T  D+D +GNSIATQREA   +A R+   + + FVEPG SAQ+I  RPVF+ LL Y+ EHP+V+ VIIYMRSR FRN  DA ITKR L +M VKL+SAKE+FGEG MADAMEA+TDI+NEVQVR SGEDI  KM +KA+ GGT GRA +GY NVR E DG QVNGIA+D +RAPL+K AFE YATGDYS+ +L   + +LGL  R   + G + LSR+ L  +L DPYYIG+V YKGE +PGRH+P+I  +LF+RVQ+V++ R  R
Sbjct:    8 GPQIAVSYLRVSTTRQMDTGADVDAEGNSIATQREANNAKAARMGALIEKEFVEPGASAQTIDKRPVFKQLLAYLGEHPDVSLVIIYMRSRAFRNLGDAVITKRRLEAMGVKLVSAKEDFGEGIMADAMEAVTDIINEVQVRMSGEDIKVKMHHKAQMGGTNGRAPIGYRNVRIEHDGRQVNGIAVDEERAPLIKRAFEMYATGDYSIDRLQETMADLGLRARPQGRGGAKELSRSHLHRMLSDPYYIGIVRYKGETFPGRHQPIIPADLFDRVQKVIEDRSAR 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00188B9FFD1.070e-12769.53recombinase family protein n=1 Tax=Microbacterium ... [more]
A0A3P1WYM2_9ACTN8.890e-11369.88Recombinase family protein n=1 Tax=Arachnia propio... [more]
A0A349CT02_9MICO4.220e-11262.28Recombinase family protein (Fragment) n=2 Tax=Micr... [more]
A0A561EAD2_9MICO5.230e-11161.43DNA invertase Pin-like site-specific DNA recombina... [more]
A0A2W6V6S8_9MICO2.950e-11060.93Recombinase family protein n=5 Tax=Microbacteriace... [more]
A0A4Q2M4A7_9MICO1.430e-10960.93Recombinase family protein n=1 Tax=Agromyces atrin... [more]
A0A7I7VC28_MYCFA2.080e-10960.56Recombinase domain-containing protein n=2 Tax=Myco... [more]
UPI00131EFCFA2.600e-10961.57recombinase family protein n=1 Tax=Planctomonas de... [more]
UPI0018CE148F1.600e-10860.92recombinase family protein n=2 Tax=Corynebacterial... [more]
H5U6L1_9ACTN6.770e-10860.92Putative recombinase n=1 Tax=Gordonia sputi NBRC 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20208contigP-wetherbeei_contig20208:375..1238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1089453.GOSPT_129_00160
PFAMsRecombinase,Resolvase,Zn_ribbon_recom
Model size864
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.11e-108
EggNOG OGsCOG1961@1|root,COG1961@2|Bacteria,2I8HV@201174|Actinobacteria,4GERK@85026|Gordoniaceae
DescriptionRecombinase zinc beta ribbon domain
Cds size864
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.4566114-CDS-P-wetherbeei_contig20208:374..12381683186193.4566114-CDS-P-wetherbeei_contig20208:374..1238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20208 375..1238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20208.1.1prot_P-wetherbeei_contig20208.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20208 375..1238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20208.1.1

>prot_P-wetherbeei_contig20208.1.1 ID=prot_P-wetherbeei_contig20208.1.1|Name=mRNA_P-wetherbeei_contig20208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
QRDPGAGTAVLYLRVSTQRQLRTATDIDPDGNSIATQREATMKRAKRLKV
PVAEVFVEPGHSAQSIANRPVFRDLLHYIEEHPEVTYVIIYMRSRVFRNQ
TDAAITKRILASMDVKLISAKEEFGEGYMADAMEAITDIMNEVQVRQSGE
DISTKMLNKAKSGGTTGRAKLGYLNVRREVDGYQVNGIAIDPKRAPLMKW
AFEQYATGDYSLVQLLRELTELGLTTRRTAKWGERPLSRTRLAELLRDPY
YIGMVPYKGEVYPGRHEPLISPELFERVQQVMDARMQR
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mRNA from alignment at P-wetherbeei_contig20208:375..1238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20208.1.1 ID=mRNA_P-wetherbeei_contig20208.1.1|Name=mRNA_P-wetherbeei_contig20208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig20208:375..1238+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGAGATCCCGGGGCGGGCACGGCGGTGCTCTACCTACGGGTCTCGAC CCAGCGCCAGCTGCGGACGGCCACGGACATCGATCCGGATGGCAACTCCA TCGCCACCCAGCGCGAGGCGACGATGAAGCGGGCGAAGCGCCTCAAGGTG CCGGTCGCCGAGGTGTTCGTCGAGCCGGGACACTCCGCGCAGTCGATCGC CAACCGGCCGGTCTTCCGCGACCTGCTCCACTACATCGAGGAGCATCCGG AGGTGACTTACGTCATCATCTACATGCGCTCCCGCGTCTTCCGCAACCAG ACCGATGCCGCCATCACCAAGCGCATCCTCGCCAGCATGGACGTCAAGCT GATCTCGGCGAAGGAGGAGTTCGGCGAGGGGTACATGGCCGACGCGATGG AGGCCATTACCGACATCATGAACGAGGTGCAGGTTCGCCAGAGCGGCGAG GACATCAGCACCAAGATGCTCAACAAGGCGAAGAGCGGCGGGACGACGGG CCGGGCCAAACTCGGCTACCTCAACGTTCGCCGCGAGGTCGATGGATATC AGGTGAACGGCATCGCCATCGACCCGAAGCGGGCACCGCTGATGAAATGG GCGTTCGAGCAGTACGCCACCGGCGACTACAGCCTGGTCCAGCTCCTGCG CGAGTTGACCGAGCTGGGCCTGACCACCCGCCGGACCGCCAAATGGGGCG AGCGGCCACTCTCCCGGACCCGACTCGCCGAGCTCCTGCGCGACCCCTAC TACATCGGCATGGTGCCCTACAAAGGCGAGGTCTACCCCGGACGCCACGA GCCCCTGATCTCGCCCGAGCTCTTCGAGCGCGTGCAGCAGGTCATGGACG CGCGGATGCAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20208:375..1238+

>mRNA_P-wetherbeei_contig20208.1.1 ID=mRNA_P-wetherbeei_contig20208.1.1|Name=mRNA_P-wetherbeei_contig20208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig20208:375..1238+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGAGATCCCGGGGCGGGCACGGCGGTGCTCTACCTACGGGTCTCGAC
CCAGCGCCAGCTGCGGACGGCCACGGACATCGATCCGGATGGCAACTCCA
TCGCCACCCAGCGCGAGGCGACGATGAAGCGGGCGAAGCGCCTCAAGGTG
CCGGTCGCCGAGGTGTTCGTCGAGCCGGGACACTCCGCGCAGTCGATCGC
CAACCGGCCGGTCTTCCGCGACCTGCTCCACTACATCGAGGAGCATCCGG
AGGTGACTTACGTCATCATCTACATGCGCTCCCGCGTCTTCCGCAACCAG
ACCGATGCCGCCATCACCAAGCGCATCCTCGCCAGCATGGACGTCAAGCT
GATCTCGGCGAAGGAGGAGTTCGGCGAGGGGTACATGGCCGACGCGATGG
AGGCCATTACCGACATCATGAACGAGGTGCAGGTTCGCCAGAGCGGCGAG
GACATCAGCACCAAGATGCTCAACAAGGCGAAGAGCGGCGGGACGACGGG
CCGGGCCAAACTCGGCTACCTCAACGTTCGCCGCGAGGTCGATGGATATC
AGGTGAACGGCATCGCCATCGACCCGAAGCGGGCACCGCTGATGAAATGG
GCGTTCGAGCAGTACGCCACCGGCGACTACAGCCTGGTCCAGCTCCTGCG
CGAGTTGACCGAGCTGGGCCTGACCACCCGCCGGACCGCCAAATGGGGCG
AGCGGCCACTCTCCCGGACCCGACTCGCCGAGCTCCTGCGCGACCCCTAC
TACATCGGCATGGTGCCCTACAAAGGCGAGGTCTACCCCGGACGCCACGA
GCCCCTGATCTCGCCCGAGCTCTTCGAGCGCGTGCAGCAGGTCATGGACG
CGCGGATGCAGCGC
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