mRNA_P-wetherbeei_contig20185.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20185.1.1
Unique NamemRNA_P-wetherbeei_contig20185.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: D7FYN8_ECTSI (AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.160e-27
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHK-SKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDCPAAAGGRGGAVRSIGAAA 348
            SYAAH C  SG K+F+A++CPLC K++R +   DP+  W+ H+R +C+P  +K +K+ K+RC+A +CR VLG TN  RC  CGK + CL  R+PD H+C A++  RG A  S  AAA
Sbjct:   39 SYAAHSCAASGNKDFRALVCPLCKKTVRFNGGQDPNQQWDLHTRTDCNPEDYKRAKQTKKRCAAASCRVVLGPTNTQRCASCGK-ETCLTHRFPDSHNCSASS--RGDARGSAAAAA 152          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A5J4Y6K6_9CHLO (Zinc finger AN1 and C2H2 domain-containing stress-associated 16-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6K6_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 3.290e-23
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   10 AHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDCP 297
            +H C K+G++    ++CP+C+K+++L+  DDP+AV+E HSR +CDPA +     + +C A  CRE LG  N + C  CG   +CLK R+P+ H CP
Sbjct:   47 SHSCSKAGSRETGTIVCPICAKAVKLTASDDPNAVFERHSRQDCDPANYAKVHQRPKCPAKGCREKLGTINTYTCKECG-VQVCLKHRFPETHQCP 141          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A8IZN9_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZN9_CHLRE)

HSP 1 Score: 99.0 bits (245), Expect = 2.090e-22
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDC 294
            SYAAH CP SG+K    ++CP+C+KS+R++   DP+A++E H+R +CDPA +     K RC    C+  L   NR+RC  C +A +CLK R P  H C
Sbjct:   47 SYAAHACPNSGSKETTVIVCPICAKSVRMTSGQDPNALFEQHTRTDCDPANYDRVHKKPRCPVAGCKTKLTTINRYRCKHCSQA-ICLKHRDPADHRC 143          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A836BBP4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBP4_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 2.660e-21
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDC 294
            SYAAH CP SG+K    ++CP+C+KS+R++   DP+A++E H+R +CDPA +     K RC    C+  L   NR+RC  C +A +CLK R P  H C
Sbjct:   46 SYAAHACPSSGSKESTVIVCPICAKSVRMTPGTDPNALFEQHTRTDCDPANYDRVHKKPRCPVAGCKTKLTTINRYRCKHCNQA-ICLKHRDPADHRC 142          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A1V9ZLT5_9STRA (AN1-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLT5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.610e-20
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHKSKK-PKERCSAPTCREVLGLTNRHRCTRCGK 249
            +Y  HECPK+GAK+ +A+ CPLC  +I L+   D +AVWE H+R  C P Q++ KK PKERC+A  CREVL  +N  +CT C K
Sbjct:   37 TYDGHECPKAGAKDARAITCPLCRATIPLTGDMDENAVWETHARTTCKPEQYQEKKKPKERCAAEGCREVLSASNTVQCTTCRK 120          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A7S1ATW2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ATW2_NOCSC)

HSP 1 Score: 85.5 bits (210), Expect = 6.320e-18
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 YAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDC 294
            Y  H C +  +++ Q VICPLC++S+R++ ++DP+ VWEAH  + C     K+     RC    C+E LG +NR  C RCG+  +CLK RY D H C
Sbjct:   52 YTCHGCQEE-SRSVQVVICPLCNQSLRVTSVEDPNTVWEAHFASGCKQVPKKT----HRCPVVGCKEQLGSSNRFDCQRCGQT-VCLKHRYEDDHAC 142          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A067CPY8_SAPPC (C2H2-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPY8_SAPPC)

HSP 1 Score: 70.5 bits (171), Expect = 6.680e-12
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPAQHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDCP 297
            +Y AH C  +GAK+ +A+ CPLC  +I L+   D     E              KKPKERC+A +CREVL  +N  +C  C K  +CL+ R+   H CP
Sbjct:   35 TYDAHACAHAGAKDARAITCPLCRATIPLTGAMDVDEYEE-------------KKKPKERCAADSCREVLTASNTVQCNSCRKK-VCLRHRFETDHQCP 119          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A2J8AAE7_9CHLO (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AAE7_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 6.540e-11
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDP 147
            SY+AH CP +G+K+   ++CP+C+KS+RL+   D +AV++AH+R +CDP
Sbjct:  104 SYSAHACPLAGSKDTTVIVCPICAKSVRLAPSQDANAVFDAHTRTDCDP 152          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A7S2XWQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.610e-9
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAH 126
            SY AH CP +G ++  A+ICPLC K+I+L E DDP+  WEAH
Sbjct:   70 SYKAHGCPLAGGRDTLAIICPLCKKTIKLLENDDPNEKWEAH 111          
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Match: A0A2K3DDL4_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDL4_CHLRE)

HSP 1 Score: 57.4 bits (137), Expect = 6.620e-7
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   85 LSEMDDPHAVWEAHSRNNCDPAQHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDC 294
            ++   DP+A++E H+R +CDPA +     K RC    C+  L   NR+RC  C +A +CLK R P  H C
Sbjct:    1 MTSGQDPNALFEQHTRTDCDPANYDRVHKKPRCPVAGCKTKLTTINRYRCKHCSQA-ICLKHRDPADHRC 69          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FYN8_ECTSI1.160e-2748.72AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpu... [more]
A0A5J4Y6K6_9CHLO3.290e-2342.71Zinc finger AN1 and C2H2 domain-containing stress-... [more]
A8IZN9_CHLRE2.090e-2244.90Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A836BBP4_9CHLO2.660e-2144.90Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A1V9ZLT5_9STRA5.610e-2052.38AN1-type domain-containing protein n=1 Tax=Achlya ... [more]
A0A7S1ATW2_NOCSC6.320e-1842.27Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A067CPY8_SAPPC6.680e-1239.39C2H2-type domain-containing protein n=2 Tax=Saprol... [more]
A0A2J8AAE7_9CHLO6.540e-1148.98Zinc finger AN1 and C2H2 domain-containing stress-... [more]
A0A7S2XWQ5_9STRA3.610e-957.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2K3DDL4_CHLRE6.620e-740.00Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20185contigP-wetherbeei_contig20185:164..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYN8
PFAMszf-AN1,zf-C2H2_4
Model size423
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700
Exons2
Evalue1.91e-28
EggNOG OGsKOG3183@1|root,KOG3183@2759|Eukaryota
Ec32 ortholog descriptionAN1 and C2H2 zinc finger protein
Ec32 orthologEc-17_000160.1
Descriptionzinc ion binding
Cds size423
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.9093895-CDS-P-wetherbeei_contig20185:163..2831683186192.9093895-CDS-P-wetherbeei_contig20185:163..283Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20185 164..283 +
1683186192.921759-CDS-P-wetherbeei_contig20185:541..8441683186192.921759-CDS-P-wetherbeei_contig20185:541..844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20185 542..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20185.1.1prot_P-wetherbeei_contig20185.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20185 164..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20185.1.1

>prot_P-wetherbeei_contig20185.1.1 ID=prot_P-wetherbeei_contig20185.1.1|Name=mRNA_P-wetherbeei_contig20185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
SYAAHECPKSGAKNFQAVICPLCSKSIRLSEMDDPHAVWEAHSRNNCDPA
QHKSKKPKERCSAPTCREVLGLTNRHRCTRCGKADLCLKCRYPDRHDCPA
AAGGRGGAVRSIGAAAGSATAGAVAARLLNSDRGLSVSSSA
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mRNA from alignment at P-wetherbeei_contig20185:164..844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20185.1.1 ID=mRNA_P-wetherbeei_contig20185.1.1|Name=mRNA_P-wetherbeei_contig20185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig20185:164..844+ (Phaeothamnion wetherbeei SAG_119_79)
AGTTACGCAGCGCACGAGTGTCCCAAGAGCGGGGCGAAGAACTTTCAGGC GGTCATCTGCCCGCTGTGCAGCAAGAGCATCCGGCTGTCGGAAATGGACG ATCCGCATGCCGTTTGGGAGGTGCATATTTCCTTCTTTTTTCTTGTCCTC ATCAGACCGTCGCTCAGAATCACTGCGCCGCGGAGAAGCGGAGGGGTGGA GAAGGACGTACTGCGTCAGAATGAGAAATCCTTCTATTGTCTCCCTTCCT TTCAAAGCACTGTTCTTCCATGGCATCCTCCACGACGTGAAAGCCCTCTA GATGCCTCTGTCTGCAGTTTTCCGACGTTTCTTCCATTTCATGCGAACCG CAAATTCTGTTTTCTCTCCTTCCCGCAGGCGCACAGCCGCAACAACTGCG ATCCGGCCCAGCACAAGAGCAAGAAGCCCAAGGAGCGTTGCTCGGCGCCG ACGTGCCGCGAGGTGCTCGGCCTCACCAACCGCCACCGCTGCACCCGCTG CGGCAAGGCCGACCTGTGCCTGAAGTGCCGCTATCCCGACCGCCACGACT GTCCGGCCGCTGCTGGCGGCCGCGGCGGTGCGGTGCGATCGATTGGCGCC GCCGCCGGCTCTGCGACTGCCGGCGCGGTGGCCGCTCGCCTGCTAAACTC GGACCGGGGCCTGTCGGTGTCGTCGTCGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20185:164..844+

>mRNA_P-wetherbeei_contig20185.1.1 ID=mRNA_P-wetherbeei_contig20185.1.1|Name=mRNA_P-wetherbeei_contig20185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig20185:164..844+ (Phaeothamnion wetherbeei SAG_119_79)
AGTTACGCAGCGCACGAGTGTCCCAAGAGCGGGGCGAAGAACTTTCAGGC
GGTCATCTGCCCGCTGTGCAGCAAGAGCATCCGGCTGTCGGAAATGGACG
ATCCGCATGCCGTTTGGGAGGCGCACAGCCGCAACAACTGCGATCCGGCC
CAGCACAAGAGCAAGAAGCCCAAGGAGCGTTGCTCGGCGCCGACGTGCCG
CGAGGTGCTCGGCCTCACCAACCGCCACCGCTGCACCCGCTGCGGCAAGG
CCGACCTGTGCCTGAAGTGCCGCTATCCCGACCGCCACGACTGTCCGGCC
GCTGCTGGCGGCCGCGGCGGTGCGGTGCGATCGATTGGCGCCGCCGCCGG
CTCTGCGACTGCCGGCGCGGTGGCCGCTCGCCTGCTAAACTCGGACCGGG
GCCTGTCGGTGTCGTCGTCGGCA
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