mRNA_P-wetherbeei_contig20013.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20013.1.1
Unique NamemRNA_P-wetherbeei_contig20013.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A7C6PZT4_9FIRM (CoA transferase subunit A n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7C6PZT4_9FIRM)

HSP 1 Score: 94.4 bits (233), Expect = 2.010e-21
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   16 KLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
            KL TL+ A A  VK G    LGGM L+R P+A   E+IRQ  ++L LL +  GFE D+LVGAGCV++VRSCYFGL+  GLAPM++  VE
Sbjct:    4 KLMTLTEA-AQLVKDGDLIGLGGMTLYRRPIAFVHELIRQAKKNLTLLAFTGGFESDLLVGAGCVSTVRSCYFGLESFGLAPMFKRRVE 91          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A7C7QQ91_9CHLR (CoA transferase subunit A (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QQ91_9CHLR)

HSP 1 Score: 88.2 bits (217), Expect = 1.280e-20
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   13 DKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMY 267
            DK+ +L  A A  V+ G   ALGGM L+R PVA   ++IRQG  DL LL   AG+E D+LVGAG V  VR+CYFGL+V GLAPM+
Sbjct:    8 DKVISLQEA-ARLVRPGDTLALGGMTLYRRPVAFVRQLIRQGTGDLILLALTAGYESDLLVGAGLVRRVRTCYFGLEVFGLAPMF 91          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A3C1A1L2_9CHLR (CoA transferase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3C1A1L2_9CHLR)

HSP 1 Score: 91.7 bits (226), Expect = 1.640e-20
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   13 DKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMY 267
            DK+ TLS A+A  V+ G   ALGGM L+R PVA   E+IR G + L LL   AG+E D+LVGAG V  VR+CYFGL+V GLAPM+
Sbjct:    3 DKVVTLSEAVA-LVQPGDTIALGGMTLYRRPVAFVRELIRSGVKGLTLLALTAGYESDLLVGAGSVKRVRTCYFGLEVFGLAPMF 86          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A523VQZ0_9ARCH (CoA transferase subunit A (Fragment) n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A523VQZ0_9ARCH)

HSP 1 Score: 87.8 bits (216), Expect = 3.430e-20
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   13 DKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
             KL  L  AI+ C++ G    +GG++ +R P++A  EIIRQ  +DL +  +V G + D+L+  GC++ VRSC+ G+++ G+AP YR AVE
Sbjct:    4 SKLMNLKEAISTCIQDGDLIGIGGLSFWRKPISACREIIRQNKKDLSICTFVGGIDVDMLIAGGCISEVRSCFVGMEIFGMAPHYRKAVE 93          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A5C9EKZ2_9ARCH (Glutaconate CoA-transferase subunit A n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A5C9EKZ2_9ARCH)

HSP 1 Score: 90.9 bits (224), Expect = 4.820e-20
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    7 RPDKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
            R  KL +L  AI+  VK G     GG++ +R P+AA  EIIRQG  +L L  +V G E D+L+GAGC + VRSC+ G+++ G+AP YR A+E
Sbjct:    5 RKSKLMSLEEAISKHVKDGDLVGFGGLSFWRKPIAACHEIIRQGLSNLTLCTFVGGIEIDMLIGAGCASEVRSCFVGMEIFGMAPNYRKAIE 96          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A0F9H7Q4_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9H7Q4_9ZZZZ)

HSP 1 Score: 86.7 bits (213), Expect = 1.880e-18
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   13 DKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
             KL +L  AI+  V+ G    +GG++ +R P++A  E+IRQ  ++L +  +V G E D+LVGAGCV+ VRSC+ G+++ G+AP YR AVE
Sbjct:    4 SKLMSLEEAISTNVQDGDLVGIGGLSFWRKPISACRELIRQNKKNLNICTFVGGIEVDMLVGAGCVSEVRSCFVGMEIFGMAPHYRKAVE 93          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A532THF0_9ARCH (Uncharacterized protein n=2 Tax=unclassified Lokiarchaeota TaxID=1655640 RepID=A0A532THF0_9ARCH)

HSP 1 Score: 85.9 bits (211), Expect = 3.670e-18
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    7 RPDKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
            R  KL +L  AI+  ++ G    +GG++ +R P++A  EIIRQ  +DL L  +V G E D+L+  GC++ VRSC+ G+++ G+AP +R AVE
Sbjct:    2 RKSKLLSLEEAISTYIQDGDLVGIGGLSFWRKPISACREIIRQNKKDLSLCTFVGGIEVDMLIAGGCISEVRSCFVGMEIFGMAPNFRKAVE 93          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A532THG7_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Lokiarchaeota archaeon Loki_b32 TaxID=2012491 RepID=A0A532THG7_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 4.450e-18
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   13 DKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
             KL  L  AI+  V+ G    +GG++ +R P++A  EIIRQ  +DL +  +V G + D+L+  GC++ VRSC+ G+++ G+AP YR AVE
Sbjct:    4 SKLMPLQEAISTYVQDGDLIGIGGLSFWRKPISACREIIRQNKKDLSICTFVGGIDVDMLIAGGCISEVRSCFIGMEIFGMAPHYRKAVE 93          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: UPI001E56F914 (CoA transferase subunit A n=2 Tax=Variovorax sp. IB41 TaxID=2779370 RepID=UPI001E56F914)

HSP 1 Score: 85.5 bits (210), Expect = 4.650e-18
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   52 VKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
            V HG   A+GGM L+R PV AA  + R G RDL +L   AG E D+L+GAGCV  +RSCY GL++ GLAP Y  A  
Sbjct:   14 VTHGTRMAIGGMTLYRRPVGAAMALARAGIRDLDVLTLTAGIETDLLIGAGCVRVLRSCYTGLEIAGLAPHYTRAAR 90          
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Match: A0A842UCD8_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A842UCD8_9ARCH)

HSP 1 Score: 85.5 bits (210), Expect = 5.060e-18
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   13 DKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDLCLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVE 282
             KL +LS A+ A V++G    +GG++ +R PV+   EIIRQG ++L L  +V G E D+LVGAGCV+ +++ + G++V G+AP YR A+E
Sbjct:    3 SKLMSLSEAVDAYVQNGDIVGIGGLSFWRKPVSLCREIIRQGKKNLTLCTFVGGIEIDMLVGAGCVSEIKASFVGMEVFGMAPNYRKAIE 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C6PZT4_9FIRM2.010e-2156.18CoA transferase subunit A n=1 Tax=Clostridia bacte... [more]
A0A7C7QQ91_9CHLR1.280e-2056.47CoA transferase subunit A (Fragment) n=1 Tax=Anaer... [more]
A0A3C1A1L2_9CHLR1.640e-2057.65CoA transferase subunit A n=1 Tax=Chloroflexi bact... [more]
A0A523VQZ0_9ARCH3.430e-2042.22CoA transferase subunit A (Fragment) n=1 Tax=Candi... [more]
A0A5C9EKZ2_9ARCH4.820e-2047.83Glutaconate CoA-transferase subunit A n=1 Tax=Cand... [more]
A0A0F9H7Q4_9ZZZZ1.880e-1845.56Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A532THF0_9ARCH3.670e-1842.39Uncharacterized protein n=2 Tax=unclassified Lokia... [more]
A0A532THG7_9ARCH4.450e-1842.22Uncharacterized protein n=1 Tax=Candidatus Lokiarc... [more]
UPI001E56F9144.650e-1853.25CoA transferase subunit A n=2 Tax=Variovorax sp. I... [more]
A0A842UCD8_9ARCH5.060e-1845.56Uncharacterized protein n=1 Tax=Candidatus Lokiarc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20013contigP-wetherbeei_contig20013:3..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog266265.Bxe_A2751
Preferred namegctA
PFAMsCoA_trans
Model size285
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00012,RC00014,RC00131,RC00137
KEGG koko:K01028,ko:K01039
KEGG ReactionR00410,R04000,R05509
KEGG Pathwayko00072,ko00280,ko00643,ko00650,ko01120,map00072,map00280,map00643,map00650,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.79e-18
EggNOG OGsCOG1788@1|root,COG1788@2|Bacteria,1NGS5@1224|Proteobacteria,2VK8V@28216|Betaproteobacteria,1K1J7@119060|Burkholderiaceae
EC2.8.3.12,2.8.3.5
DescriptionCoenzyme A transferase
Cds size285
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.6760767-CDS-P-wetherbeei_contig20013:2..2871683186188.6760767-CDS-P-wetherbeei_contig20013:2..287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20013 3..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20013.1.1prot_P-wetherbeei_contig20013.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20013 3..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20013.1.1

>prot_P-wetherbeei_contig20013.1.1 ID=prot_P-wetherbeei_contig20013.1.1|Name=mRNA_P-wetherbeei_contig20013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
RWRPDKLTTLSAAIAACVKHGAPPALGGMALFRSPVAAAAEIIRQGFRDL
CLLDYVAGFEGDILVGAGCVASVRSCYFGLDVVGLAPMYRAAVEQ
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mRNA from alignment at P-wetherbeei_contig20013:3..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20013.1.1 ID=mRNA_P-wetherbeei_contig20013.1.1|Name=mRNA_P-wetherbeei_contig20013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig20013:3..287- (Phaeothamnion wetherbeei SAG_119_79)
CGTTGGCGGCCAGACAAATTAACTACCTTAAGCGCAGCCATCGCCGCCTG CGTGAAGCATGGCGCGCCGCCCGCGCTCGGTGGCATGGCGCTGTTTCGCA GTCCGGTCGCGGCAGCCGCCGAGATCATCCGCCAAGGCTTTCGCGATCTG TGCTTGCTGGATTATGTCGCAGGTTTCGAAGGCGACATCCTGGTCGGTGC AGGCTGTGTGGCCAGCGTGCGCAGCTGCTATTTCGGTCTCGACGTGGTCG GTCTCGCACCGATGTACCGCGCAGCAGTGGAACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20013:3..287-

>mRNA_P-wetherbeei_contig20013.1.1 ID=mRNA_P-wetherbeei_contig20013.1.1|Name=mRNA_P-wetherbeei_contig20013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig20013:3..287- (Phaeothamnion wetherbeei SAG_119_79)
CGTTGGCGGCCAGACAAATTAACTACCTTAAGCGCAGCCATCGCCGCCTG
CGTGAAGCATGGCGCGCCGCCCGCGCTCGGTGGCATGGCGCTGTTTCGCA
GTCCGGTCGCGGCAGCCGCCGAGATCATCCGCCAAGGCTTTCGCGATCTG
TGCTTGCTGGATTATGTCGCAGGTTTCGAAGGCGACATCCTGGTCGGTGC
AGGCTGTGTGGCCAGCGTGCGCAGCTGCTATTTCGGTCTCGACGTGGTCG
GTCTCGCACCGATGTACCGCGCAGCAGTGGAACAG
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