mRNA_P-wetherbeei_contig19969.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19969.1.1
Unique NamemRNA_P-wetherbeei_contig19969.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: UPI0019C2C350 (L-rhamnose mutarotase n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019C2C350)

HSP 1 Score: 146 bits (368), Expect = 3.600e-43
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   22 GPLPAAESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDGDGPLRMPLERVF 336
            GPLP +ES AFCLR+R G E EY+RRHDE+WP+MR  + DAGLLHYEI+L  +  LLF F+VRR DH+M     NPVW+RWQ +MADIL+QD   PLR+PL R+F
Sbjct:    9 GPLPGSESLAFCLRLRAGHEAEYQRRHDELWPDMRRALLDAGLLHYEIYLEPQSLLLFIFMVRRSDHSMGDLPQNPVWQRWQHHMADILMQDNGLPLRVPLRRMF 113          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A4R6RJN0_9HYPH (L-rhamnose mutarotase n=2 Tax=Oharaeibacter diazotrophicus TaxID=1920512 RepID=A0A4R6RJN0_9HYPH)

HSP 1 Score: 112 bits (280), Expect = 6.470e-30
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   25 PLPAA-ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADIL-VQDGDGPLRMPLERVFRL 342
            P PA  E  AF +R+ PG E EY+RRHDEIWPE+ A++++AG+  Y IHL RE  LLF  + RRRDH M +  A+PV RRW A+MADI+  +  D P+ +PL  VF +
Sbjct:    2 PDPATHEKYAFRMRLHPGMEAEYRRRHDEIWPELAALLREAGVEDYSIHLDRETDLLFGVLWRRRDHGMAALPAHPVMRRWWAHMADIMETKPDDEPVAVPLVTVFHM 109          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A5P8Z288_9RHOB (L-rhamnose mutarotase n=1 Tax=Roseivivax sp. THAF197b TaxID=2588299 RepID=A0A5P8Z288_9RHOB)

HSP 1 Score: 111 bits (278), Expect = 1.090e-29
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   40 ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDGDG-PLRMPLERVF 336
            E  AF +++ PGCE EY+RRHDEIWPE+ A++ D G+  Y IHL  E GLLF  + RR DH MD+   +PV RRW A+MADI+    D  P+  PL+ VF
Sbjct:    2 EKYAFKMQLNPGCEAEYRRRHDEIWPELVALLHDTGVSDYSIHLDAETGLLFGVLWRRDDHGMDALPDHPVMRRWWAHMADIMATHSDNAPVATPLKTVF 101          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A2S3UJG2_9HYPH (L-rhamnose mutarotase n=1 Tax=Roseibium marinum TaxID=281252 RepID=A0A2S3UJG2_9HYPH)

HSP 1 Score: 111 bits (277), Expect = 1.550e-29
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   40 ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDGDG-PLRMPLERVFRL 342
            E  AF +++ PG E EYKRRHDEIWPE+ A+++DAG+  Y IHL RE  +LFA + R+  H MD   ++P+ RRW A+MAD++V   D  P+  PLE VF +
Sbjct:    2 EKVAFRMQLHPGMEAEYKRRHDEIWPELVALLKDAGISDYSIHLDRETNILFAVLWRQDGHTMDDLSSHPIMRRWWAHMADLMVVKPDNEPVAAPLETVFHM 103          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A7X3S725_9HYPH (L-rhamnose mutarotase n=1 Tax=Stappia sp. GBMRC 2046 TaxID=2692190 RepID=A0A7X3S725_9HYPH)

HSP 1 Score: 111 bits (277), Expect = 1.550e-29
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   40 ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDGDG-PLRMPLERVFRL 342
            E  AF +++RPGCEDEY++RHDEIWPE+  ++++AG+  Y IHL RE G LFA + R   H MD    +PV RRW  +MADI+    DG P+ +PLE +F +
Sbjct:    2 EKYAFKMKLRPGCEDEYRKRHDEIWPELVTLLKEAGISDYSIHLDRETGTLFAVLWRWDGHTMDRLPLDPVMRRWWDHMADIMETKPDGEPVAIPLETMFHM 103          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: UPI001BCC77B6 (L-rhamnose mutarotase n=1 Tax=Ancylobacter oerskovii TaxID=459519 RepID=UPI001BCC77B6)

HSP 1 Score: 111 bits (277), Expect = 1.550e-29
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   40 ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDGDG-PLRMPLERVFRL 342
            E  AF +++ PG  +EY+RRHD +WPE+RA+++DAG+  Y IHL RE GLLFA + R  DH MD+   +PV RRW ++MADI+    D  P+ +PLE VF L
Sbjct:    2 EKIAFKMKLLPGQAEEYRRRHDALWPELRALLKDAGIRDYSIHLDRETGLLFATLWRSADHGMDALPEHPVMRRWWSHMADIMETRPDSSPVSVPLETVFHL 103          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: UPI001921CA87 (L-rhamnose mutarotase n=1 Tax=Microvirga aerilata TaxID=670292 RepID=UPI001921CA87)

HSP 1 Score: 111 bits (277), Expect = 1.690e-29
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   28 LPAAESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDGDG-PLRMPLERVFRL 342
            + A E  AF +++ PG E+EY+RRHDEIWPE+ A+++DAG+  Y IHL RE G+LFA + R  DHAM +   +PV +RW A+MADI+  + D  P+  PL  VF +
Sbjct:    1 MSAREKYAFTMQLNPGMEEEYRRRHDEIWPELVALLKDAGVEDYSIHLDRETGVLFAVLWRPADHAMANLPDHPVMKRWWAHMADIMATNPDNSPVEKPLATVFHM 106          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A1N6FW40_9RHOB (L-rhamnose mutarotase n=1 Tax=Vannielia litorea TaxID=1217970 RepID=A0A1N6FW40_9RHOB)

HSP 1 Score: 110 bits (276), Expect = 2.270e-29
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   37 AESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADIL-VQDGDGPLRMPLERVFRL 342
            +E  AF +++ PGCE EY+RRHDEIWPE+  +++ AG+  Y IHL RE G+LF  + R  DH M++  A+PV +RW A+MADI+  +  + P+ +PLE VF L
Sbjct:    2 SEKYAFRMQLNPGCEAEYRRRHDEIWPELVTLLKQAGISDYSIHLDRESGVLFGVLWREDDHGMEALPAHPVMQRWWAHMADIMETRPDNAPVAVPLECVFHL 104          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A2T7H957_9HYPH (L-rhamnose mutarotase n=1 Tax=Labrenzia sp. 011 TaxID=2171494 RepID=A0A2T7H957_9HYPH)

HSP 1 Score: 110 bits (275), Expect = 3.130e-29
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   40 ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILV-QDGDGPLRMPLERVFRL 342
            E  AF + + PG E EY++RH+EIWPE+  ++++AG+  Y IHL RE  +LFA + RR  H MD   A+PV RRW A+MAD++V Q G+ P+ +PLE VF L
Sbjct:    2 EKIAFKMMLHPGMEAEYRKRHEEIWPELTGLLKEAGISDYSIHLDRETHILFAVLWRRDGHGMDDLPAHPVMRRWWAHMADLMVTQPGNEPVTVPLETVFHL 103          
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Match: A0A0F2PQM3_9HYPH (L-rhamnose mutarotase n=1 Tax=Hoeflea sp. BRH_c9 TaxID=1629712 RepID=A0A0F2PQM3_9HYPH)

HSP 1 Score: 110 bits (275), Expect = 3.130e-29
Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   40 ESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGLLHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADIL-VQDGDGPLRMPLERVFRL 342
            E  AF + + PGCE EYK+RHDEIWPE+ A+++ AG+  Y IHL  E G+LFA + R+  H MD+   +PV + W AYMAD++   +GD P+ +PL+ VF++
Sbjct:    2 EKYAFKMMLNPGCETEYKKRHDEIWPELVALLRRAGISDYSIHLDAETGILFAVLWRKTGHGMDALPLDPVMQEWWAYMADLMQTGEGDQPVAVPLQTVFQM 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19969.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C2C3503.600e-4362.86L-rhamnose mutarotase n=1 Tax=Rhodoferax sp. TaxID... [more]
A0A4R6RJN0_9HYPH6.470e-3051.85L-rhamnose mutarotase n=2 Tax=Oharaeibacter diazot... [more]
A0A5P8Z288_9RHOB1.090e-2952.00L-rhamnose mutarotase n=1 Tax=Roseivivax sp. THAF1... [more]
A0A2S3UJG2_9HYPH1.550e-2950.00L-rhamnose mutarotase n=1 Tax=Roseibium marinum Ta... [more]
A0A7X3S725_9HYPH1.550e-2950.00L-rhamnose mutarotase n=1 Tax=Stappia sp. GBMRC 20... [more]
UPI001BCC77B61.550e-2950.98L-rhamnose mutarotase n=1 Tax=Ancylobacter oerskov... [more]
UPI001921CA871.690e-2949.06L-rhamnose mutarotase n=1 Tax=Microvirga aerilata ... [more]
A0A1N6FW40_9RHOB2.270e-2948.54L-rhamnose mutarotase n=1 Tax=Vannielia litorea Ta... [more]
A0A2T7H957_9HYPH3.130e-2950.00L-rhamnose mutarotase n=1 Tax=Labrenzia sp. 011 Ta... [more]
A0A0F2PQM3_9HYPH3.130e-2948.04L-rhamnose mutarotase n=1 Tax=Hoeflea sp. BRH_c9 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19969contigP-wetherbeei_contig19969:202..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122218.KB893665_gene134
Preferred namerhaM
PFAMsrhaM
Model size345
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00563
KEGG koko:K03534
KEGG ReactionR10819
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.18e-29
EggNOG OGsCOG3254@1|root,COG3254@2|Bacteria,1RGYV@1224|Proteobacteria,2U9B8@28211|Alphaproteobacteria,1JY1R@119045|Methylobacteriaceae
EC5.1.3.32
DescriptionL-rhamnose mutarotase
Cds size345
COG categoryG
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.3458247-CDS-P-wetherbeei_contig19969:201..5461683186186.3458247-CDS-P-wetherbeei_contig19969:201..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19969 202..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19969.1.1prot_P-wetherbeei_contig19969.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19969 202..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19969.1.1

>prot_P-wetherbeei_contig19969.1.1 ID=prot_P-wetherbeei_contig19969.1.1|Name=mRNA_P-wetherbeei_contig19969.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MEISNSIGPLPAAESAAFCLRVRPGCEDEYKRRHDEIWPEMRAMMQDAGL
LHYEIHLRREDGLLFAFVVRRRDHAMDSFRANPVWRRWQAYMADILVQDG
DGPLRMPLERVFRL*
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mRNA from alignment at P-wetherbeei_contig19969:202..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19969.1.1 ID=mRNA_P-wetherbeei_contig19969.1.1|Name=mRNA_P-wetherbeei_contig19969.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig19969:202..546- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAATCTCGAATTCGATCGGACCGCTGCCCGCCGCCGAGAGCGCGGC TTTCTGCCTTCGCGTGCGCCCGGGGTGCGAGGACGAGTACAAGCGGCGGC ACGACGAGATCTGGCCCGAAATGCGGGCGATGATGCAGGACGCGGGCCTC CTGCACTACGAGATCCACCTGCGCCGCGAGGACGGGCTGCTGTTCGCATT CGTCGTGCGCCGGCGCGACCATGCGATGGATTCGTTTCGGGCGAACCCGG TCTGGCGACGCTGGCAGGCCTACATGGCCGACATCCTGGTGCAGGACGGC GACGGGCCCCTGCGCATGCCGCTCGAGCGCGTGTTCCGGCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19969:202..546-

>mRNA_P-wetherbeei_contig19969.1.1 ID=mRNA_P-wetherbeei_contig19969.1.1|Name=mRNA_P-wetherbeei_contig19969.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig19969:202..546- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAATCTCGAATTCGATCGGACCGCTGCCCGCCGCCGAGAGCGCGGC
TTTCTGCCTTCGCGTGCGCCCGGGGTGCGAGGACGAGTACAAGCGGCGGC
ACGACGAGATCTGGCCCGAAATGCGGGCGATGATGCAGGACGCGGGCCTC
CTGCACTACGAGATCCACCTGCGCCGCGAGGACGGGCTGCTGTTCGCATT
CGTCGTGCGCCGGCGCGACCATGCGATGGATTCGTTTCGGGCGAACCCGG
TCTGGCGACGCTGGCAGGCCTACATGGCCGACATCCTGGTGCAGGACGGC
GACGGGCCCCTGCGCATGCCGCTCGAGCGCGTGTTCCGGCTCTAG
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