mRNA_P-wetherbeei_contig19927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19927.1.1
Unique NamemRNA_P-wetherbeei_contig19927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A1Z5KL67_FISSO (DnaJ homolog subfamily C member 13 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL67_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 1.160e-20
Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    7 LVTQVLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFISRWLCALWMCDSAGAGE--LLRRLVPAGMLQYLRMPVLSPAELQCLNELE 285
            L+  +L  +AP AA++++D ALS A++L HF+ A +SP + QRF+SR+LC+LW+   AG  E  LLRR+VP G L YL MP+LS  E + L+ELE
Sbjct:  840 LLLHILLTHAPSAAKAIRDEALSLAVLLEHFYLAVYSPMEGQRFLSRYLCSLWLSGPAGCPEKRLLRRMVPHGFLTYLSMPLLSKVEEEQLDELE 934          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A7R9U6R8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6R8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.960e-19
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 SFLVTQVLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFISRWLCALWMCDSAG--AGELLRRLVPAGMLQYLRMPVLSPAELQCLNELEDEIF 297
            + L+T ++T + P  + ++ + A+S+A+VLRHF+N CFSPS  QRFISR+L  +WM  S+   A  LLRR++PA    YL MP L+  E + L+E+E+E F
Sbjct:  159 ALLLTALVTRD-PKISDAVAEAAMSEAVVLRHFYNGCFSPSTDQRFISRYLIQIWMSGSSSGSAKRLLRRMLPAAFFTYLNMPRLTEPEERNLDEIEEEYF 258          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A448YXQ5_9STRA (J domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXQ5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.080e-17
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 SFLVTQVLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFISRWLCALWMCDSAGAGE--LLRRLVPAGMLQYLRMPVLSPAELQCLNELEDEIFD 300
            S L+  +L  +AP  A ++++ +L+  ++L HFH A FSP   QRF+SR+LC+LW+       E  LL+R+VP G + YL+MP LS AE + L+ +E ++ +
Sbjct:  801 SALLLHLLNTHAPTVADAIREASLASGILLHHFHAAIFSPMAGQRFLSRFLCSLWLSGPMNCDEKKLLKRMVPRGFIPYLKMPPLSRAEEEQLDVIEQDVIE 902          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A1E7FFA6_9STRA (J domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFA6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.350e-16
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 SFLVTQVLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFISRWLCALWMCDSAGAGE--LLRRLVPAGMLQYLRMPVLSPAELQCLNELEDEIFD 300
            S L+  +L  +AP  + ++++ +L+  ++L HFH A FSP   QRF+SR+LC+LW+       E  LL+R+VP G + YL+MP LS  E + L+ +E +  +
Sbjct:  803 SALLLHLLNTHAPTVSGTIREASLASGILLHHFHAAIFSPMAGQRFLSRFLCSLWLSGPMNCDEKKLLKRMVPRGFIPYLKMPPLSRVEEEQLDVIEQDAIE 904          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A482SZ65_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ65_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-14
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   22 LTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFISRWLCALWMCDSAGAGE---LLRRLVPAGMLQYLRMPVLSPAELQCLNELEDEIF 297
            L +N P  A   ++  L  ALVL+HF+NA FSPS  QRF+SR+L A W+  S        LL R++P+G+++YL+   +S    Q L+ +ED+ +
Sbjct:  672 LLKNRPMVATGFKEMVLCDALVLKHFYNAIFSPSGTQRFLSRFLIATWLSGSVTTNPGKALLTRMIPSGLVEYLKFGAISEEHRQNLDSMEDDFY 766          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A7S1H7E6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H7E6_HEMAN)

HSP 1 Score: 63.5 bits (153), Expect = 3.980e-10
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   49 RSLQDTALSQALVLRHFHNACFSPSKHQRFISRWLCALWMCDSAGAGELLRRLVPAGMLQYLRMPVLSP 255
            R++Q+ AL +  +LRHFH+A F+  K QR ISR +CALW+ DS  A  L+ R++P G       P   P
Sbjct:  109 RAMQEAALREGALLRHFHSALFAQGKSQRDISRSMCALWLDDSPDAQSLVSRILPPGCTSLFIPPPPEP 177          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: UPI00189051E7 (dnaJ homolog subfamily C member 13 n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI00189051E7)

HSP 1 Score: 61.6 bits (148), Expect = 6.690e-9
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   19 VLTENAPDAARSLQDTALSQALVLRHFHNACFSPSK-HQRFISRWLCALWMCDSAGAGELLRRLVPAGMLQYLRMPVLSPAELQCLNELED 288
            ++ E        +Q  AL++A + RH   A ++P++ HQR ++R L ALW+ D A A +L++R++P+G+L +L      PAE    + +E+
Sbjct:  605 LIEEGGGGVGARMQALALAEAALPRHLLAALYAPARLHQRHLARHLLALWLVDHAPAHDLMKRIMPSGLLAFLESTEAPPAEALAADRVEE 695          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: A0A8I6SGY1_CIMLE (J domain-containing protein n=2 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6SGY1_CIMLE)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-8
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 SFLVTQVLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRF-----ISRWLCALWMCDSAGAGELLRRLVPAGMLQYLRMPVLSPAE 261
            S L+  ++ E   D AR++Q+ ALS++ + RH   A F+P    +      +SR L  LW+  +    ELL+RL+P+G+L YL    + P E
Sbjct:  602 SLLMQAIIEEAEQDVARNMQELALSESALPRHLLTALFTPKTDLQMYTQCKLSRQLVGLWLAGNNNGMELLKRLLPSGLLAYLESDEIPPKE 693          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: UPI001E27C865 (dnaJ homolog subfamily C member 13 n=1 Tax=Colias crocea TaxID=72248 RepID=UPI001E27C865)

HSP 1 Score: 59.7 bits (143), Expect = 3.170e-8
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    7 LVTQVLTENAPDAARS-LQDTALSQALVLRHFHNACFSPSK------HQRFISRWLCALWMCDSAGAGELLRRLVPAGMLQYLRMPVLSPA 258
            LVT+ L E       S +Q  AL++A + RH   A + P++      H R ++R L ALW+ D A A +LL+R++P+G+L +L    + PA
Sbjct:  587 LVTRALVEEGSGGVGSRIQGLALAEAALPRHLLTALYEPARSGLARLHHRHLARHLVALWLVDHAPAADLLKRIMPSGLLAFLESAEVPPA 677          
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Match: G3R257_GORGO (DnaJ heat shock protein family (Hsp40) member C13 n=1 Tax=Gorilla gorilla gorilla TaxID=9595 RepID=G3R257_GORGO)

HSP 1 Score: 59.7 bits (143), Expect = 3.180e-8
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   19 VLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFI-----SRWLCALWMCDSAGAGELLRRLVPAGMLQYLRMPVLSP 255
            ++ E   + A  +Q+ ALS+  + RH H A F+ S  QR +     SR L  LW  D+A A  LL+R++P G+L YL    L P
Sbjct:  588 IIEEGDKEIATKMQELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNATATNLLKRILPPGLLAYLESSDLVP 671          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5KL67_FISSO1.160e-2050.53DnaJ homolog subfamily C member 13 n=2 Tax=Fistuli... [more]
A0A7R9U6R8_9STRA1.960e-1945.54Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A448YXQ5_9STRA1.080e-1740.20J domain-containing protein n=1 Tax=Pseudo-nitzsch... [more]
A0A1E7FFA6_9STRA3.350e-1638.24J domain-containing protein n=1 Tax=Fragilariopsis... [more]
A0A482SZ65_9ARCH1.020e-1440.00J domain-containing protein n=1 Tax=archaeon TaxID... [more]
A0A7S1H7E6_HEMAN3.980e-1043.48Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI00189051E76.690e-932.97dnaJ homolog subfamily C member 13 n=2 Tax=Manduca... [more]
A0A8I6SGY1_CIMLE1.700e-834.78J domain-containing protein n=2 Tax=Cimex lectular... [more]
UPI001E27C8653.170e-836.26dnaJ homolog subfamily C member 13 n=1 Tax=Colias ... [more]
G3R257_GORGO3.180e-838.10DnaJ heat shock protein family (Hsp40) member C13 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19927contigP-wetherbeei_contig19927:142..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008861752.1
Model size300
Max annot lvl2759|Eukaryota
KEGG koko:K09533
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.46e-17
EggNOG OGsKOG1789@1|root,KOG1789@2759|Eukaryota
Descriptionregulation of early endosome to recycling endosome transport
Cds size300
COG categoryO
BRITEko00000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.4482346-CDS-P-wetherbeei_contig19927:141..2521683186185.4482346-CDS-P-wetherbeei_contig19927:141..252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19927 142..252 -
1683186185.4656522-CDS-P-wetherbeei_contig19927:336..5251683186185.4656522-CDS-P-wetherbeei_contig19927:336..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19927 337..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19927.1.1prot_P-wetherbeei_contig19927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19927 142..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19927.1.1

>prot_P-wetherbeei_contig19927.1.1 ID=prot_P-wetherbeei_contig19927.1.1|Name=mRNA_P-wetherbeei_contig19927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
SFLVTQVLTENAPDAARSLQDTALSQALVLRHFHNACFSPSKHQRFISRW
LCALWMCDSAGAGELLRRLVPAGMLQYLRMPVLSPAELQCLNELEDEIFD
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mRNA from alignment at P-wetherbeei_contig19927:142..525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19927.1.1 ID=mRNA_P-wetherbeei_contig19927.1.1|Name=mRNA_P-wetherbeei_contig19927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig19927:142..525- (Phaeothamnion wetherbeei SAG_119_79)
TCATTCCTTGTGACGCAGGTCCTGACGGAGAACGCACCAGATGCGGCTCG GAGCCTGCAGGACACCGCGCTGTCGCAGGCGCTCGTGCTGCGCCACTTCC ACAACGCATGCTTCAGCCCAAGCAAGCACCAGCGCTTCATCAGCCGCTGG CTCTGCGCCCTCTGGATGTGCGACAGCGCCGGCGCTGGCGTCGGTGGGGG CGGCGGCAGCGGGGGTGGCGGCGGCCATGGCGGCGTCGGCGGCGGTGACG GCGGGAGGGCCTCGCCGGGAAAGGAGCTGCTGCGGCGGCTGGTGCCGGCC GGCATGCTGCAGTACCTGCGGATGCCCGTGCTGTCGCCGGCCGAGCTCCA GTGCCTGAACGAACTCGAGGACGAAATCTTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19927:142..525-

>mRNA_P-wetherbeei_contig19927.1.1 ID=mRNA_P-wetherbeei_contig19927.1.1|Name=mRNA_P-wetherbeei_contig19927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig19927:142..525- (Phaeothamnion wetherbeei SAG_119_79)
TCATTCCTTGTGACGCAGGTCCTGACGGAGAACGCACCAGATGCGGCTCG
GAGCCTGCAGGACACCGCGCTGTCGCAGGCGCTCGTGCTGCGCCACTTCC
ACAACGCATGCTTCAGCCCAAGCAAGCACCAGCGCTTCATCAGCCGCTGG
CTCTGCGCCCTCTGGATGTGCGACAGCGCCGGCGCTGGCGAGCTGCTGCG
GCGGCTGGTGCCGGCCGGCATGCTGCAGTACCTGCGGATGCCCGTGCTGT
CGCCGGCCGAGCTCCAGTGCCTGAACGAACTCGAGGACGAAATCTTCGAC
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