mRNA_P-wetherbeei_contig19908.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19908.1.1
Unique NamemRNA_P-wetherbeei_contig19908.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.430e-36
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
            VYS  LQW+   +Q   FP+G+RPVHEDILLAKLRPGQ I+ EAHC +GVGKDHAK+SPVATASYRLLP++ +  +V+G+ A +L A CPM V
Sbjct:  161 VYSKHLQWLPQADQAEEFPDGIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNV 253          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.720e-34
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPM 279
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P V +   V GDDA+ LV +C M
Sbjct:  157 VYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQM 246          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A6B2LAX2_9EUKA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX2_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 4.740e-34
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQ--DLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
            VYS D+ WV  G Q  + V  N ++PVH+DIL+AKLRPGQ I   A C KG+GKDHAK+SPVATA+YRLLPEVTI+GD+ GD A  LV KCPM V
Sbjct:  111 VYSGDMVWVPHGVQADEFVGENAIKPVHDDILIAKLRPGQEIDLSARCCKGIGKDHAKFSPVATATYRLLPEVTIIGDLTGDKADALVKKCPMNV 205          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.040e-33
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 TMVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVA-KCPMKV 285
            T VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P + +   V G DAR+LVA KC + V
Sbjct:  152 TSVYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGV 246          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.800e-33
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
            VYS   +W+  G Q   FP+G+RP+H+DILLAKLR GQ I  E HC KGVGKDHAKYSPVATASYRL P +T+   V G  ARELVA CPM V
Sbjct:  180 VYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNV 272          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 126 bits (316), Expect = 3.420e-33
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKC 273
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P+V ++  V G DA+ LV +C
Sbjct:  148 VYSRDLEWVPQGNQEERF-GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEEC 235          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A482SEW1_9ARCH (RPOLD domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEW1_9ARCH)

HSP 1 Score: 120 bits (301), Expect = 9.450e-33
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   40 GNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
            G Q+ VFP GVRPVH+DI+LAKL PGQ I+ EAHC KGVGKDH K+SPVATASYRLLPE+T + +V  + A EL A CPM V
Sbjct:    3 GTQEEVFPEGVRPVHDDIVLAKLAPGQRIEFEAHCRKGVGKDHTKFSPVATASYRLLPEITFLQEVLDEQAEELRAMCPMGV 84          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 3.610e-32
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPM 279
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KG+GKDHAK+SPVATASYRL+P+V     V G DA+ LV  C M
Sbjct:  185 VYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQM 274          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: K3X7N1_GLOUD (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7N1_GLOUD)

HSP 1 Score: 122 bits (306), Expect = 1.150e-31
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 TMVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELV 264
            T VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P V +   V G DA++LV
Sbjct:  152 TSVYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELKQKVTGADAKKLV 238          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A8K1FTD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTD9_PYTOL)

HSP 1 Score: 121 bits (304), Expect = 2.260e-31
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVA-KCPMKV 285
            +YS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPV+TASYRLLP +     V G DA++LV  KC M V
Sbjct:  154 IYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVSTASYRLLPHIEFKQPVEGADAKKLVEEKCVMGV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RJI0_9STRA5.430e-3664.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662X4Y9_9STRA2.720e-3468.13DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6B2LAX2_9EUKA4.740e-3464.21DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA1.040e-3366.67DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A836C8K2_9STRA2.800e-3364.52DNA-directed RNA polymerases I and III subunit RPA... [more]
D0NVB2_PHYIT3.420e-3367.42DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A482SEW1_9ARCH9.450e-3368.29RPOLD domain-containing protein (Fragment) n=1 Tax... [more]
H3GV90_PHYRM3.610e-3265.93DNA-directed RNA polymerases I and III subunit RPA... [more]
K3X7N1_GLOUD1.150e-3168.18DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A8K1FTD9_PYTOL2.260e-3164.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19908contigP-wetherbeei_contig19908:219..807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_16658T0
PFAMsRNA_pol_A_bac,RNA_pol_L
Model size285
Max annot lvl4776|Peronosporales
KEGG rclassRC02795
KEGG koko:K03027
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181,M00182
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.65e-34
EggNOG OGsCOG0202@1|root,KOG1521@2759|Eukaryota,3Q78X@4776|Peronosporales
Ec32 ortholog descriptionDNA-directed RNA polymerase, insert domain
Ec32 orthologEc-14_004750.1
DescriptionRNA polymerases D
Cds size282
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.8401718-CDS-P-wetherbeei_contig19908:218..4641683186184.8401718-CDS-P-wetherbeei_contig19908:218..464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19908 219..464 -
1683186184.8491635-CDS-P-wetherbeei_contig19908:768..8041683186184.8491635-CDS-P-wetherbeei_contig19908:768..804Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19908 769..804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.864598-UTR-P-wetherbeei_contig19908:804..8071683186184.864598-UTR-P-wetherbeei_contig19908:804..807Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19908 805..807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19908.1.1prot_P-wetherbeei_contig19908.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19908 219..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19908.1.1

>prot_P-wetherbeei_contig19908.1.1 ID=prot_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKG
VGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV
back to top

mRNA from alignment at P-wetherbeei_contig19908:219..807-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19908.1.1 ID=mRNA_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=589bp|location=Sequence derived from alignment at P-wetherbeei_contig19908:219..807- (Phaeothamnion wetherbeei SAG_119_79)
ACCATGGTGTACAGCAGTGACCTGCAGTGGGTCTGCTCGGTAAGAATTTT CTGCTTGTATTGCACCGTTTTGAATCATGTCCAATGCATGGACGCCTATC TCTGTCAGTGTTTATGTATTTGCGGCGCTCCTCCTGTTTCGGCGGTTGCT TTAGTCTTCCCGTGTCGTTTCGCCAATTTTTGACTTGCTCTGCCTGCCGC CTTCAACTTTGCCATTCCCGCCACCGCTGCCGCCGCCGCCGGGCTGCCCC TCCTCACTGCGGCTGCCTCTGCCGCCTTCCGCCGACCGCCGTATTCCGCC TTCCGCCATCTCCCGCATTCCTCCCGCGAACGCACCATCACAGGGCAACC AGGACCTAGTATTCCCAAACGGCGTCCGCCCGGTCCACGAGGACATCTTG CTGGCGAAGCTGCGGCCAGGGCAGTCAATCCAGTGCGAGGCGCACTGCAA CAAGGGCGTCGGAAAGGACCACGCCAAGTATTCGCCCGTCGCAACGGCGT CGTACCGCCTGCTGCCCGAGGTCACCATTGTCGGCGACGTCAGGGGGGAC GACGCGCGAGAGCTCGTGGCCAAGTGCCCCATGAAGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19908:219..807-

>mRNA_P-wetherbeei_contig19908.1.1 ID=mRNA_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig19908:219..807- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTACAGCAGTGACCTGCAGTGGGTCTGCTCGGGCAACCAGGACCT
AGTATTCCCAAACGGCGTCCGCCCGGTCCACGAGGACATCTTGCTGGCGA
AGCTGCGGCCAGGGCAGTCAATCCAGTGCGAGGCGCACTGCAACAAGGGC
GTCGGAAAGGACCACGCCAAGTATTCGCCCGTCGCAACGGCGTCGTACCG
CCTGCTGCCCGAGGTCACCATTGTCGGCGACGTCAGGGGGGACGACGCGC
GAGAGCTCGTGGCCAAGTGCCCCATGAAGGTG
back to top