mRNA_P-wetherbeei_contig19908.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.430e-36 Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
VYS LQW+ +Q FP+G+RPVHEDILLAKLRPGQ I+ EAHC +GVGKDHAK+SPVATASYRLLP++ + +V+G+ A +L A CPM V
Sbjct: 161 VYSKHLQWLPQADQAEEFPDGIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNV 253
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.720e-34 Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPM 279
VYS DL+WV GNQ+ F +RPVHEDIL+AKLRPGQSI EAHC KGVGKDHAK+SPVATASYRL+P V + V GDDA+ LV +C M
Sbjct: 157 VYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQM 246
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A6B2LAX2_9EUKA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX2_9EUKA) HSP 1 Score: 127 bits (319), Expect = 4.740e-34 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQ--DLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
VYS D+ WV G Q + V N ++PVH+DIL+AKLRPGQ I A C KG+GKDHAK+SPVATA+YRLLPEVTI+GD+ GD A LV KCPM V
Sbjct: 111 VYSGDMVWVPHGVQADEFVGENAIKPVHDDILIAKLRPGQEIDLSARCCKGIGKDHAKFSPVATATYRLLPEVTIIGDLTGDKADALVKKCPMNV 205
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.040e-33 Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 1 TMVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVA-KCPMKV 285
T VYS DL+WV GNQ+ F +RPVHEDIL+AKLRPGQSI EAHC KGVGKDHAK+SPVATASYRL+P + + V G DAR+LVA KC + V
Sbjct: 152 TSVYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGV 246
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.800e-33 Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
VYS +W+ G Q FP+G+RP+H+DILLAKLR GQ I E HC KGVGKDHAKYSPVATASYRL P +T+ V G ARELVA CPM V
Sbjct: 180 VYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNV 272
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT) HSP 1 Score: 126 bits (316), Expect = 3.420e-33 Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKC 273
VYS DL+WV GNQ+ F +RPVHEDIL+AKLRPGQSI EAHC KGVGKDHAK+SPVATASYRL+P+V ++ V G DA+ LV +C
Sbjct: 148 VYSRDLEWVPQGNQEERF-GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEEC 235
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A482SEW1_9ARCH (RPOLD domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEW1_9ARCH) HSP 1 Score: 120 bits (301), Expect = 9.450e-33 Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 40 GNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 285
G Q+ VFP GVRPVH+DI+LAKL PGQ I+ EAHC KGVGKDH K+SPVATASYRLLPE+T + +V + A EL A CPM V
Sbjct: 3 GTQEEVFPEGVRPVHDDIVLAKLAPGQRIEFEAHCRKGVGKDHTKFSPVATASYRLLPEITFLQEVLDEQAEELRAMCPMGV 84
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM) HSP 1 Score: 124 bits (311), Expect = 3.610e-32 Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPM 279
VYS DL+WV GNQ+ F +RPVHEDIL+AKLRPGQSI EAHC KG+GKDHAK+SPVATASYRL+P+V V G DA+ LV C M
Sbjct: 185 VYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQM 274
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: K3X7N1_GLOUD (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7N1_GLOUD) HSP 1 Score: 122 bits (306), Expect = 1.150e-31 Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 1 TMVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELV 264
T VYS DL+WV GNQ+ F +RPVHEDIL+AKLRPGQSI EAHC KGVGKDHAK+SPVATASYRL+P V + V G DA++LV
Sbjct: 152 TSVYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELKQKVTGADAKKLV 238
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A8K1FTD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTD9_PYTOL) HSP 1 Score: 121 bits (304), Expect = 2.260e-31 Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 7 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVA-KCPMKV 285
+YS DL+WV GNQ+ F +RPVHEDIL+AKLRPGQSI EAHC KGVGKDHAK+SPV+TASYRLLP + V G DA++LV KC M V
Sbjct: 154 IYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVSTASYRLLPHIEFKQPVEGADAKKLVEEKCVMGV 246 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19908.1.1 >prot_P-wetherbeei_contig19908.1.1 ID=prot_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp MVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGback to top mRNA from alignment at P-wetherbeei_contig19908:219..807- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19908.1.1 ID=mRNA_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=589bp|location=Sequence derived from alignment at P-wetherbeei_contig19908:219..807- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19908:219..807- >mRNA_P-wetherbeei_contig19908.1.1 ID=mRNA_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig19908:219..807- (Phaeothamnion wetherbeei SAG_119_79)back to top |