mRNA_P-wetherbeei_contig1990.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1990.2.1
Unique NamemRNA_P-wetherbeei_contig1990.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1990.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1990contigP-wetherbeei_contig1990:2187..5276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLD3
Preferred nameMYO16
PFAMsAnk_2,Ank_4,Ank_5,COR,Myosin_head,Pkinase,Roc
Model size2537
Max annot lvl2759|Eukaryota
KEGG koko:K08803,ko:K17481
KEGG Pathwayko04140,ko05200,ko05219,map04140,map05200,map05219
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.81e-10
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_007730.1
EC2.7.11.1
Descriptionspectrin binding
Cds size2100
COG categoryI
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.6197898-UTR-P-wetherbeei_contig1990:2186..25971683186184.6197898-UTR-P-wetherbeei_contig1990:2186..2597Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1990 2187..2597 -
1683186184.6517715-UTR-P-wetherbeei_contig1990:5250..52761683186184.6517715-UTR-P-wetherbeei_contig1990:5250..5276Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1990 5251..5276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.6318796-CDS-P-wetherbeei_contig1990:2597..42771683186184.6318796-CDS-P-wetherbeei_contig1990:2597..4277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1990 2598..4277 -
1683186184.6421053-CDS-P-wetherbeei_contig1990:4830..52501683186184.6421053-CDS-P-wetherbeei_contig1990:4830..5250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1990 4831..5250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1990.2.1prot_P-wetherbeei_contig1990.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1990 2598..5250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1990.2.1

>prot_P-wetherbeei_contig1990.2.1 ID=prot_P-wetherbeei_contig1990.2.1|Name=mRNA_P-wetherbeei_contig1990.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=700bp
MPSETMAPSDAKTAVLEAAEAVRSAKDCDVEAVREYLERGGDVNTCSSST
LRTLLHWGAAKSSERMVRMLLGYGASVGARTLRQLTPLHLACAAESVNIV
VLRLLLEHGADADARDERGVSGLHLAAQEGDTDAVRLLLQCGADKDGREI
GRWTPLHFAAWAGSAAVTRLLLVANAAADSQEADDGATPLHFACAYGHAQ
VVRVLLDFGAAADLPNADGLLPDQCVGVSVPGDGLLPNDMARLASLLQDR
RASRRGGGSAPALRERCEALQSRVADLEKQLRRARREEQDAAALMHNGAA
LRGAMRPECALCRRGPKAAVFLPCRHLVACGACAATATVCPFCRADITGL
EGGSNGGGGGRGTVAAATAGSASESVESGGGRRGGGGGGAGAGGTDRATS
THSSDEQWRMQAKIRELVRENVDLKTRLAARRRESGMGCGAVGCGPGGCE
ACDASGDGASDDPGGVSGFDIDIDGHGGIDGGGGFRDGGDDGASGGQHDH
DGTGSSSGGENSGGSGHSGDGGGRSGGRSGGRNSRGHGSRDHSGGGGRGH
EEAHGVSGGEFESEDRFANESWGESSSRAGRRGGGDGGGSRSRRPHCQDF
HGGYSHRSAAAAVAPPPSERPQTVWAAAGSETSTAPPSTSGFGFALTATT
QLGMPEGSTGSYNSEGRREREMMRLERASAGTAPEEHAPLLRAPMSPPC*
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mRNA from alignment at P-wetherbeei_contig1990:2187..5276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1990.2.1 ID=mRNA_P-wetherbeei_contig1990.2.1|Name=mRNA_P-wetherbeei_contig1990.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3090bp|location=Sequence derived from alignment at P-wetherbeei_contig1990:2187..5276- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAAGGCGCGTGCCGGCCAACGACATGCCGTCTGAAACAATGGCGCCC
TCAGATGCAAAGACGGCGGTCCTGGAAGCGGCGGAAGCCGTCCGCAGCGC
AAAGGACTGTGATGTAGAGGCCGTTCGCGAGTACCTGGAGCGCGGAGGTG
ACGTCAATACTTGCTCGTCGAGCACGCTTCGAACTCTGTTGCACTGGGGC
GCGGCCAAAAGCTCCGAGAGGATGGTTCGGATGCTGCTGGGGTACGGTGC
GAGCGTCGGTGCTCGGACGCTGCGGCAGCTCACGCCTCTGCACCTCGCCT
GCGCCGCCGAGTCGGTCAACATTGTGGTCTTGCGCCTGCTTCTCGAGCAT
GGCGCGGACGCGGATGCGCGCGACGAGAGAGGGGTTTCGGGCCTCCATCT
CGCCGCTCAAGAAGGCGACACGGACGCCGTTCGACTATTATTGCAGGTTA
GTGTTTTCAAATGGGCGACCTCCCTCTCTTCCTTTCTCGATTTTGAATTC
GTTGTAAATAACTGTGGTCTTTTACGGTGGGGTCAAATTTTGATAAATGT
GTGCGGTTCCAGTCCTTTCTTCCAAACGGCGAAGAGGCAGAAAAACGAAT
GAAAGTGGTTCCACCTCACAAGCACTGGTTGAGAAATACACAGCGCGTGA
CCTTACGCTCGACTTTTTCAAACATCGATTGACATGGGCAAAGCGTAGTT
GTTGACAAGGCCTAGCGGAAAAGCAAGGTTCTTGCGCAATGCCGCATTTC
GAGAAAGAGGGCACTCCTCCCTCCCCCTTTGTAAGATAGGCAAGCCATAT
TTTGTCCAAACTGCTGCAATGGGCGTGACGGCCGGGCGCCTCCCCCCTCT
TCCTCTTTTCTTTTTCCTTGCTGACCCTCCTTCTTCCTCACCATTGTCCT
TTTTCCCTCTCGCCCCCTTTCCTTTCTAACTCACCGTTCCTCTATCTGCA
TCCCACGCCGCATCGACGAATGCTCGGAAACGCAACCCAACCAACGCAGT
GCGGCGCCGACAAGGACGGCCGCGAGATTGGCCGCTGGACGCCGCTCCAC
TTCGCCGCCTGGGCCGGCAGCGCCGCCGTCACCCGCCTCCTCCTCGTCGC
CAACGCCGCTGCCGACAGCCAAGAGGCCGACGACGGCGCCACCCCTTTGC
ACTTCGCCTGCGCCTACGGCCACGCGCAGGTGGTCCGCGTCTTGCTGGAC
TTCGGCGCCGCCGCGGATCTGCCAAACGCCGACGGGCTCTTGCCGGACCA
GTGCGTCGGCGTTTCGGTGCCCGGCGACGGCCTGCTGCCGAATGACATGG
CGCGGCTAGCCAGCCTGCTGCAGGACCGCCGCGCCAGCCGGCGCGGCGGC
GGCAGCGCGCCGGCGCTGCGCGAGCGCTGCGAGGCGCTGCAGTCGCGCGT
TGCCGACCTGGAGAAGCAGCTGCGGCGAGCGCGACGGGAAGAGCAGGACG
CCGCGGCGTTGATGCACAACGGTGCCGCGCTGCGGGGCGCCATGCGGCCG
GAGTGCGCGCTTTGCCGGCGGGGCCCAAAGGCGGCGGTGTTCCTGCCATG
CCGCCACTTGGTGGCGTGCGGCGCTTGCGCGGCGACGGCGACGGTCTGCC
CGTTCTGCCGTGCCGACATTACCGGCCTCGAGGGCGGCAGCAATGGAGGC
GGCGGCGGCCGGGGAACGGTGGCGGCGGCGACGGCAGGGTCGGCTTCGGA
AAGCGTTGAAAGCGGTGGAGGCAGAAGGGGCGGTGGCGGCGGTGGCGCAG
GCGCAGGCGGAACGGACCGCGCCACCAGCACGCACTCATCCGACGAGCAG
TGGCGGATGCAGGCGAAGATTCGGGAGCTGGTACGGGAAAACGTTGACCT
CAAGACGCGGCTGGCGGCGCGGAGGCGAGAATCTGGGATGGGCTGCGGCG
CAGTAGGCTGCGGCCCTGGCGGCTGCGAGGCCTGCGACGCCTCCGGCGAC
GGGGCCAGCGACGACCCCGGAGGCGTGAGCGGCTTCGACATTGACATAGA
TGGCCACGGCGGCATCGACGGCGGTGGCGGCTTTCGTGACGGCGGTGATG
ACGGAGCCAGCGGCGGGCAGCACGACCATGATGGCACAGGGAGTAGCAGC
GGCGGCGAGAACAGCGGCGGCAGCGGTCACAGTGGTGACGGCGGCGGTCG
CAGCGGCGGCCGCAGCGGCGGCCGCAACAGCCGCGGTCATGGCAGCCGTG
ACCACAGCGGTGGTGGCGGCCGGGGCCACGAAGAGGCCCATGGCGTGAGC
GGCGGAGAGTTTGAGAGCGAGGACAGGTTTGCAAACGAGAGCTGGGGCGA
GAGCAGCTCACGCGCCGGCCGCCGAGGCGGCGGCGATGGCGGTGGCAGCC
GCAGCCGGCGCCCCCACTGCCAAGATTTCCACGGCGGCTACAGCCACCGC
TCGGCGGCGGCAGCGGTGGCGCCGCCGCCGTCGGAGCGACCGCAGACGGT
GTGGGCGGCGGCGGGCAGCGAGACCAGCACGGCCCCGCCTTCGACGTCGG
GCTTCGGCTTTGCACTGACAGCGACGACGCAGCTAGGCATGCCGGAAGGG
AGCACTGGCTCTTATAATTCGGAGGGCCGCCGCGAGCGAGAGATGATGCG
CCTGGAACGGGCATCGGCCGGAACCGCTCCAGAGGAGCACGCGCCGTTGC
TGCGTGCTCCGATGTCGCCGCCATGCTGAGAGGCGTGTTGCATGTTGCAG
GCTGAGGGCGACCAATGCGACACGGCGGTGTGTGTAACGGACAAGAAGGG
CGGCGGCGGCGCAGTTCTACGTAGGGTCGAAGGTGGCGGCGGCGGCAGGG
GCGGCAATTATGGCGGCGGCGACGGCTACTATAGCAGTGGCTTTGGGACG
GCCGCAAGTCTGCGGCCGAGGGCAAGCACGGCGCCGGTCCACCAGGCTCT
TTTCTTTACTCTTTCATGTCGATATGCATGGCGACAAAGAGGGAAGCGGC
GACTCTCCGATAGGATTGCCCAGAGAGACTTCCGCTAGAATGGGGGTTTC
AAGGAGACGTAGGATACGAAGTAGGACCCCAGCTTTTCTTTTCCCTTGTT
AATCATAATGAATCATAGCCGACCTTCGAAGACAAAAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1990:2187..5276-

>mRNA_P-wetherbeei_contig1990.2.1 ID=mRNA_P-wetherbeei_contig1990.2.1|Name=mRNA_P-wetherbeei_contig1990.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2100bp|location=Sequence derived from alignment at P-wetherbeei_contig1990:2187..5276- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCTGAAACAATGGCGCCCTCAGATGCAAAGACGGCGGTCCTGGA
AGCGGCGGAAGCCGTCCGCAGCGCAAAGGACTGTGATGTAGAGGCCGTTC
GCGAGTACCTGGAGCGCGGAGGTGACGTCAATACTTGCTCGTCGAGCACG
CTTCGAACTCTGTTGCACTGGGGCGCGGCCAAAAGCTCCGAGAGGATGGT
TCGGATGCTGCTGGGGTACGGTGCGAGCGTCGGTGCTCGGACGCTGCGGC
AGCTCACGCCTCTGCACCTCGCCTGCGCCGCCGAGTCGGTCAACATTGTG
GTCTTGCGCCTGCTTCTCGAGCATGGCGCGGACGCGGATGCGCGCGACGA
GAGAGGGGTTTCGGGCCTCCATCTCGCCGCTCAAGAAGGCGACACGGACG
CCGTTCGACTATTATTGCAGTGCGGCGCCGACAAGGACGGCCGCGAGATT
GGCCGCTGGACGCCGCTCCACTTCGCCGCCTGGGCCGGCAGCGCCGCCGT
CACCCGCCTCCTCCTCGTCGCCAACGCCGCTGCCGACAGCCAAGAGGCCG
ACGACGGCGCCACCCCTTTGCACTTCGCCTGCGCCTACGGCCACGCGCAG
GTGGTCCGCGTCTTGCTGGACTTCGGCGCCGCCGCGGATCTGCCAAACGC
CGACGGGCTCTTGCCGGACCAGTGCGTCGGCGTTTCGGTGCCCGGCGACG
GCCTGCTGCCGAATGACATGGCGCGGCTAGCCAGCCTGCTGCAGGACCGC
CGCGCCAGCCGGCGCGGCGGCGGCAGCGCGCCGGCGCTGCGCGAGCGCTG
CGAGGCGCTGCAGTCGCGCGTTGCCGACCTGGAGAAGCAGCTGCGGCGAG
CGCGACGGGAAGAGCAGGACGCCGCGGCGTTGATGCACAACGGTGCCGCG
CTGCGGGGCGCCATGCGGCCGGAGTGCGCGCTTTGCCGGCGGGGCCCAAA
GGCGGCGGTGTTCCTGCCATGCCGCCACTTGGTGGCGTGCGGCGCTTGCG
CGGCGACGGCGACGGTCTGCCCGTTCTGCCGTGCCGACATTACCGGCCTC
GAGGGCGGCAGCAATGGAGGCGGCGGCGGCCGGGGAACGGTGGCGGCGGC
GACGGCAGGGTCGGCTTCGGAAAGCGTTGAAAGCGGTGGAGGCAGAAGGG
GCGGTGGCGGCGGTGGCGCAGGCGCAGGCGGAACGGACCGCGCCACCAGC
ACGCACTCATCCGACGAGCAGTGGCGGATGCAGGCGAAGATTCGGGAGCT
GGTACGGGAAAACGTTGACCTCAAGACGCGGCTGGCGGCGCGGAGGCGAG
AATCTGGGATGGGCTGCGGCGCAGTAGGCTGCGGCCCTGGCGGCTGCGAG
GCCTGCGACGCCTCCGGCGACGGGGCCAGCGACGACCCCGGAGGCGTGAG
CGGCTTCGACATTGACATAGATGGCCACGGCGGCATCGACGGCGGTGGCG
GCTTTCGTGACGGCGGTGATGACGGAGCCAGCGGCGGGCAGCACGACCAT
GATGGCACAGGGAGTAGCAGCGGCGGCGAGAACAGCGGCGGCAGCGGTCA
CAGTGGTGACGGCGGCGGTCGCAGCGGCGGCCGCAGCGGCGGCCGCAACA
GCCGCGGTCATGGCAGCCGTGACCACAGCGGTGGTGGCGGCCGGGGCCAC
GAAGAGGCCCATGGCGTGAGCGGCGGAGAGTTTGAGAGCGAGGACAGGTT
TGCAAACGAGAGCTGGGGCGAGAGCAGCTCACGCGCCGGCCGCCGAGGCG
GCGGCGATGGCGGTGGCAGCCGCAGCCGGCGCCCCCACTGCCAAGATTTC
CACGGCGGCTACAGCCACCGCTCGGCGGCGGCAGCGGTGGCGCCGCCGCC
GTCGGAGCGACCGCAGACGGTGTGGGCGGCGGCGGGCAGCGAGACCAGCA
CGGCCCCGCCTTCGACGTCGGGCTTCGGCTTTGCACTGACAGCGACGACG
CAGCTAGGCATGCCGGAAGGGAGCACTGGCTCTTATAATTCGGAGGGCCG
CCGCGAGCGAGAGATGATGCGCCTGGAACGGGCATCGGCCGGAACCGCTC
CAGAGGAGCACGCGCCGTTGCTGCGTGCTCCGATGTCGCCGCCATGCTGA
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