mRNA_P-wetherbeei_contig19896.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19896.1.1
Unique NamemRNA_P-wetherbeei_contig19896.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A836CB35_9STRA (Immunophilin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB35_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.200e-49
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    7 TVVVVSPGPTEQWQRAEKLFPTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPE-KPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            TV+VV PG  EQW+  EK F  QK+++LN  ++ TYDLGGPL ++ QAYY+KRVSKGW FRA P PW AYLEKPD S+E+L  Y + KPSLRE+S  VR+ S+ R+ IFNDRF+PGFG RL
Sbjct:  148 TVIVVQPGVAEQWRACEKRFTEQKLIFLNAPISTTYDLGGPLQSMEQAYYLKRVSKGWAFRAYPAPWTAYLEKPDSSVEVLCEYKDGKPSLRELSGSVREESLRRYAIFNDRFAPGFGGRL 268          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A6V1RIV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RIV3_HETAK)

HSP 1 Score: 154 bits (389), Expect = 1.590e-43
Identity = 69/120 (57.50%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    7 TVVVVSPGPTEQWQRAEKLFPTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            TVV+V+PGPT  W++A + FP QK+V+LN  + E Y++G PL  +  AYY+KRVSKG+V R  P PWK+YLE P+G  E++ SY E+P LREVS  +R TS++R+GIFNDRF+ GFGARL
Sbjct:  224 TVVIVNPGPTAVWKKALEQFPEQKLVFLNSLVYENYNIGAPLPGVETAYYLKRVSKGYVGRRYPSPWKSYLEGPEGQSEVMSSYDERPQLREVSEELRKTSLERYGIFNDRFAKGFGARL 343          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: D7FZ58_ECTSI (Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ58_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 5.710e-41
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    7 TVVVVSPGPTEQWQRAEKLFPTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPG--FGARL 366
            TV+VV+PGPT +W    + F  QKV++LN  L+ETYDLGGPL  L Q YY+KRVSKG+VFR SP PW+A LEKP G +E+L  Y EKP LR V+ +VR  SM RFG+ NDR++     G RL
Sbjct:  194 TVIVVAPGPTAEWASCAQRFKEQKVIFLNAPLSETYDLGGPLKDLEQGYYLKRVSKGYVFRVSPKPWEALLEKPGGGLEILGKYNEKPLLRNVAKVVRSESMKRFGMSNDRWTNDKRLGGRL 315          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A7S2XYT2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYT2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.340e-40
Identity = 66/120 (55.00%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    7 TVVVVSPGPTEQWQRAEKLFPTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            TV+VV+PG    W +A+K+F  QKVVYLN  +TETYDLGGPL  L Q+ Y KR+SKG+V R  P  W+ YL+KPD + E L  + EKP LRE S L    SM+R+G+ NDR++ GFG RL
Sbjct:  203 TVIVVNPGGNSVWNKADKMFQDQKVVYLNSLVTETYDLGGPLKDLEQSLYFKRISKGYVLRVFPNKWEVYLDKPDFTTEKLAVFDEKPKLREASKLTMQESMERYGVNNDRWAAGFGGRL 322          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A6S9J3V2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9J3V2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.800e-38
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 VVVVSPGPTEQWQRAEKLF--PTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            ++ V+PG  E W R       P    V LN A + +YDLG       +AYY+KRVSKGWVFR+ PGPW+AYLEKPDG++E+LKSY  KP LRE++ALVR+ S  R+ I NDR+SPGFG RL
Sbjct:  109 ILCVNPGGEETWDRIVSAHGSPGCPFVVLNNAYSTSYDLGNKRG-YEEAYYLKRVSKGWVFRSYPGPWQAYLEKPDGTVELLKSYKNKPPLREIAALVREESFKRYAINNDRWSPGFGERL 228          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A7S3Q0R4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0R4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.190e-38
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   10 VVVVSPGPTEQWQR--AEKLFPTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            V+ ++PG  E W R  +    P+   V LN A + TYDLG       +AYY+KRVSKGW++RA PGPW+AYLEKPDG++E+L+S+  KP LREVSALVRD S  R+ I NDR+S GFG RL
Sbjct:  171 VICINPGGEETWDRVLSAHTTPSSSFVVLNNAYSTTYDLGNKRG-YEEAYYLKRVSKGWIYRAYPGPWEAYLEKPDGNVELLQSFKTKPLLREVSALVRDESFKRYAINNDRWSSGFGGRL 290          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A6V2QCT4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QCT4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.100e-37
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 VVVVSPGPTEQWQRAEKLF--PTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            ++ V+PG  E W R       P    V LN A + +YDLG       +AYY+KRVSKGWVFR+ PGPW+AYLEKPDG++E+LKSY  KP LRE++ALVR+ S  R+ I NDR+SPGFG RL
Sbjct:  181 ILCVNPGGEETWDRIVSAHGSPGCPFVVLNNAYSTSYDLGNKRG-YEEAYYLKRVSKGWVFRSYPGPWQAYLEKPDGTVELLKSYKNKPPLREIAALVREESFKRYAINNDRWSPGFGERL 300          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A7S0VQN8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQN8_9CRYP)

HSP 1 Score: 134 bits (336), Expect = 1.170e-37
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   10 VVVVSPGPTEQWQRAEKLFPTQKV-VYLNGALTE-TYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            V+VV+PGP +QW+  +K      V V+LN      TY+LGGPL    Q YY+KRVSKGWVFRA PG W+A +E PDG+   LK+Y E+P LR+VS LVRD S   +G+ NDR++ GFG RL
Sbjct:   39 VIVVNPGPQDQWEECDKRTRGAGVSVFLNSISGGWTYELGGPLKDYEQVYYLKRVSKGWVFRAYPGKWQALVEAPDGTTVPLKTYDERPLLRDVSKLVRDFSFTNYGLMNDRYAKGFGGRL 159          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A7S1UZ45_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ45_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.300e-37
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   10 VVVVSPGPTEQWQRAEKLF--PTQKVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            +V ++PG  E W+R       P    V LN A +  Y+LG       +AYY+KR+SKGWVFRA PGPW+AYLE+PDG +E++KSY +KP LR+V+ LVR+ S  R+ I NDR++PGFG RL
Sbjct:  146 IVCINPGGEETWERLVSAHGSPNAPFVVLNNAYSTAYELGNQRG-FEEAYYLKRISKGWVFRAFPGPWQAYLERPDGKVELMKSYKKKPQLRDVATLVREESFKRYAINNDRWTPGFGERL 265          
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Match: A0A7S1E2K1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2K1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.100e-37
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    7 TVVVVSPGPTEQWQRAEKLFPTQ-KVVYLNGALTETYDLGGPLSTLTQAYYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVRDTSMDRFGIFNDRFSPGFGARL 366
            T+V  +PG  E W R  K   ++   + LN A + TY LG   +   +AYYVKR+SKGW++R+ PGPW+AYLE+PD  +E+LKSY  KP LRE + LVR  S  RF I NDR++ GFG RL
Sbjct:   24 TIVCCNPGGEENWDRIRKASGSEGPFIVLNNAYSTTYGLGNKRADYEEAYYVKRISKGWIYRSFPGPWEAYLERPDCKVELLKSYRTKPELRECAELVRTESFKRFAINNDRWTSGFGGRL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19896.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CB35_9STRA5.200e-4961.98Immunophilin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A6V1RIV3_HETAK1.590e-4357.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FZ58_ECTSI5.710e-4157.38Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2XYT2_9STRA1.340e-4055.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9J3V2_9STRA1.800e-3855.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3Q0R4_9STRA2.190e-3855.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6V2QCT4_9STRA1.100e-3755.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0VQN8_9CRYP1.170e-3753.72Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1UZ45_9STRA5.300e-3751.24Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1E2K1_9STRA6.100e-3750.41Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19896contigP-wetherbeei_contig19896:53..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ58
PFAMsDUF1995
Model size369
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.37e-42
EggNOG OGs2BHAJ@1|root,2S1BD@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_006370.1
DescriptionDomain of unknown function (DUF1995)
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.4062142-CDS-P-wetherbeei_contig19896:52..1301683186184.4062142-CDS-P-wetherbeei_contig19896:52..130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19896 53..130 +
1683186184.4166543-CDS-P-wetherbeei_contig19896:621..9121683186184.4166543-CDS-P-wetherbeei_contig19896:621..912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19896 622..912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19896.1.1prot_P-wetherbeei_contig19896.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19896 53..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19896.1.1

>prot_P-wetherbeei_contig19896.1.1 ID=prot_P-wetherbeei_contig19896.1.1|Name=mRNA_P-wetherbeei_contig19896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MGTVVVVSPGPTEQWQRAEKLFPTQKVVYLNGALTETYDLGGPLSTLTQA
YYVKRVSKGWVFRASPGPWKAYLEKPDGSIEMLKSYPEKPSLREVSALVR
DTSMDRFGIFNDRFSPGFGARL*
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mRNA from alignment at P-wetherbeei_contig19896:53..912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19896.1.1 ID=mRNA_P-wetherbeei_contig19896.1.1|Name=mRNA_P-wetherbeei_contig19896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=860bp|location=Sequence derived from alignment at P-wetherbeei_contig19896:53..912+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCACGGTGGTGGTGGTATCGCCAGGCCCCACGGAGCAGTGGCAACG CGCCGAGAAGCTCTTTCCGACGCAGAAGGTGCGTCGGTGTCGCGTTGTAT ATGCGGTTGCGCGTTGTTTGTGCCGTTTGGGGAACCTTGGCCGCTTTTAA ATGAGCCGTGCTGGCTCAGGTCATTGCGGTGATGGGGACGAAGAGAGCGG GTTGCCGTGAGTCCCAAGCCTAGGCGCAGGGAATGTCGTCTTGCGTAGAT TCTTCCGTCCTTTCTGTATGCTCCGGCCGGGATTGGAGTCTTCCCTGCGC ACGTGCGCCAGGCGGTCCTCCCGCTGCCGTCTGGGCGCACGCCATACTAA ACCGGCGCCTGAGGTTGGACAGGTCACGTCTTCCGCTGGGTATTTCTGGA AAACAGGAGCATGCAACCCGTGGTGGCGCCGCATCAGACGCAGCGGCGGT GGCAGCCTCATTAGCCGATCGCAGAAAAGAAGTGACGCTGATTTTCATTT GTAGATTTCACCTGCCACTTCTCCACCGACCGCCACGACCGAATCCTCCG CCGTCCCAACAAACAAAAGGTGGTGTACTTGAATGGCGCGCTGACGGAGA CGTATGACCTCGGCGGTCCGCTCTCGACACTGACGCAAGCCTACTACGTC AAGCGCGTCTCCAAGGGCTGGGTCTTCCGCGCTTCCCCGGGCCCCTGGAA GGCCTACCTGGAAAAGCCGGACGGGTCCATCGAGATGCTCAAGAGCTACC CGGAGAAACCATCGCTGCGGGAGGTGTCGGCGCTCGTGCGGGACACGTCG ATGGACCGCTTCGGCATCTTCAACGACCGCTTCAGCCCCGGCTTCGGCGC CCGCCTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19896:53..912+

>mRNA_P-wetherbeei_contig19896.1.1 ID=mRNA_P-wetherbeei_contig19896.1.1|Name=mRNA_P-wetherbeei_contig19896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig19896:53..912+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCACGGTGGTGGTGGTATCGCCAGGCCCCACGGAGCAGTGGCAACG
CGCCGAGAAGCTCTTTCCGACGCAGAAGGTGGTGTACTTGAATGGCGCGC
TGACGGAGACGTATGACCTCGGCGGTCCGCTCTCGACACTGACGCAAGCC
TACTACGTCAAGCGCGTCTCCAAGGGCTGGGTCTTCCGCGCTTCCCCGGG
CCCCTGGAAGGCCTACCTGGAAAAGCCGGACGGGTCCATCGAGATGCTCA
AGAGCTACCCGGAGAAACCATCGCTGCGGGAGGTGTCGGCGCTCGTGCGG
GACACGTCGATGGACCGCTTCGGCATCTTCAACGACCGCTTCAGCCCCGG
CTTCGGCGCCCGCCTTTAG
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