mRNA_P-wetherbeei_contig19797.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19797.1.1
Unique NamemRNA_P-wetherbeei_contig19797.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A836RE15_9BACT (ABC transporter substrate-binding protein (Fragment) n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A836RE15_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.000e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   28 LVAAAAIDAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            LV    IDAVSLDPAVAYEF+S N C++ YDTL+ Y+  DF+ P P +A+SWE
Sbjct:   30 LVVGDRIDAVSLDPAVAYEFSSVNTCMNAYDTLIIYKAGDFSTPYPGIAESWE 82          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A1Q7RBB9_9BACT (SBP_bac_5 domain-containing protein n=1 Tax=Armatimonadetes bacterium 13_1_40CM_3_65_7 TaxID=1805024 RepID=A0A1Q7RBB9_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   10 GDHSSTLV-AAAAIDAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            G  +STLV  A   D +SLDPAVAYEFT   L  + Y+TLV+++GAD +  KP+LAQSW+
Sbjct:   36 GGAASTLVWYADTSDLISLDPAVAYEFTGVLLAHNAYETLVKFDGADLSTIKPALAQSWD 95          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A535K3V3_9CHLR (ABC transporter substrate-binding protein n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535K3V3_9CHLR)

HSP 1 Score: 61.6 bits (148), Expect = 1.410e-9
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   19 SSTLVAAAAI-DAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            +STLV  A + D +SLDPAVAYEF+   L  + Y+TLV++EGAD +  KPSLAQSW+
Sbjct:   41 ASTLVWYADVSDLISLDPAVAYEFSGVLLAHNVYETLVKFEGADLSTIKPSLAQSWD 97          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A2G6KAB3_9BACT (SBP_bac_5 domain-containing protein n=1 Tax=candidate division KSB3 bacterium TaxID=2044937 RepID=A0A2G6KAB3_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 3.640e-9
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   16 HSSTLVAAAAIDAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            +  TLV       VSLDPA AYE TS  +    Y+ L+ +EG DFTHP+P LA+SWE
Sbjct:   31 NKETLVIGMQDFTVSLDPAKAYEVTSWGMMTQLYERLINFEGDDFTHPEPELAESWE 87          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A1Q7RAT2_9BACT (SBP_bac_5 domain-containing protein (Fragment) n=3 Tax=Terrabacteria group TaxID=1783272 RepID=A0A1Q7RAT2_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 3.230e-8
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   49 DAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSW 183
            D +SLDPAVAYEF+   +  + YDTLV +EG D T  KP LAQSW
Sbjct:   39 DMISLDPAVAYEFSGVLVAQNLYDTLVAFEGEDLTTLKPRLAQSW 83          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A1F3BAK6_9BACT (ABC transporter substrate-binding protein n=1 Tax=Armatimonadetes bacterium RBG_19FT_COMBO_69_19 TaxID=1797289 RepID=A0A1F3BAK6_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 4.440e-8
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   25 TLVAAAAI-DAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            TLV  A I D +SLDPAVAYEF+   +  + YDTLV +EG D T  KP LAQSW+
Sbjct:   29 TLVYVADISDMISLDPAVAYEFSGILVAQNAYDTLVAFEGEDLTTLKPRLAQSWK 83          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A1Q7FRN4_9BACT (SBP_bac_5 domain-containing protein n=1 Tax=Armatimonadetes bacterium 13_1_40CM_64_14 TaxID=1805026 RepID=A0A1Q7FRN4_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 6.070e-8
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   49 DAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSW 183
            D +SLDPAVAYEF+      + YDTLV +EG D T  KP LAQSW
Sbjct:   20 DMISLDPAVAYEFSGILAATNIYDTLVAFEGEDLTTLKPRLAQSW 64          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A3M1RE75_9BACT (ABC transporter substrate-binding protein n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A3M1RE75_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   49 DAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            DAVSLDPA AYEF+S  +    YD LV + G DFT  +P LA+SW+
Sbjct:   42 DAVSLDPARAYEFSSVTIVEQLYDRLVEFLGGDFTKVQPGLAESWD 87          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A1Q7PGG9_9BACT (SBP_bac_5 domain-containing protein (Fragment) n=1 Tax=Armatimonadetes bacterium 13_1_40CM_3_65_7 TaxID=1805024 RepID=A0A1Q7PGG9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.120e-7
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   49 DAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSW 183
            D +SLDPAVAYEF+   +  + YDTLV +EG D T  KP LA SW
Sbjct:   26 DMISLDPAVAYEFSGVLVAQNLYDTLVAFEGEDLTTLKPRLATSW 70          
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Match: A0A7C2E648_9FIRM (ABC transporter substrate-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2E648_9FIRM)

HSP 1 Score: 55.5 bits (132), Expect = 2.120e-7
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   55 VSLDPAVAYEFTSANLCLDFYDTLVRYEGADFTHPKPSLAQSWE 186
            +SLDPAVAYEF+   +  + YDTLV +EG D T  KP LAQSW+
Sbjct:    2 ISLDPAVAYEFSGILVAQNTYDTLVAFEGEDLTTLKPRLAQSWK 45          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19797.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836RE15_9BACT2.000e-1260.38ABC transporter substrate-binding protein (Fragmen... [more]
A0A1Q7RBB9_9BACT1.020e-955.00SBP_bac_5 domain-containing protein n=1 Tax=Armati... [more]
A0A535K3V3_9CHLR1.410e-957.89ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A2G6KAB3_9BACT3.640e-950.88SBP_bac_5 domain-containing protein n=1 Tax=candid... [more]
A0A1Q7RAT2_9BACT3.230e-860.00SBP_bac_5 domain-containing protein (Fragment) n=3... [more]
A0A1F3BAK6_9BACT4.440e-858.18ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1Q7FRN4_9BACT6.070e-860.00SBP_bac_5 domain-containing protein n=1 Tax=Armati... [more]
A0A3M1RE75_9BACT1.140e-756.52ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1Q7PGG9_9BACT2.120e-757.78SBP_bac_5 domain-containing protein (Fragment) n=1... [more]
A0A7C2E648_9FIRM2.120e-759.09ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19797contigP-wetherbeei_contig19797:9..194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122223.KB890687_gene2518
PFAMsSBP_bac_5
Model size186
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K02035
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.51e-08
EggNOG OGsCOG0747@1|root,COG0747@2|Bacteria,1WI92@1297|Deinococcus-Thermus
DescriptionBacterial extracellular solute-binding proteins, family 5 Middle
Cds size186
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.4218495-CDS-P-wetherbeei_contig19797:8..1941683186181.4218495-CDS-P-wetherbeei_contig19797:8..194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19797 9..194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19797.1.1prot_P-wetherbeei_contig19797.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19797 9..194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19797.1.1

>prot_P-wetherbeei_contig19797.1.1 ID=prot_P-wetherbeei_contig19797.1.1|Name=mRNA_P-wetherbeei_contig19797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
EPAGDHSSTLVAAAAIDAVSLDPAVAYEFTSANLCLDFYDTLVRYEGADF
THPKPSLAQSWE
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mRNA from alignment at P-wetherbeei_contig19797:9..194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19797.1.1 ID=mRNA_P-wetherbeei_contig19797.1.1|Name=mRNA_P-wetherbeei_contig19797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig19797:9..194- (Phaeothamnion wetherbeei SAG_119_79)
GAACCCGCCGGGGATCACAGCTCGACTCTGGTCGCCGCCGCGGCCATCGA CGCCGTAAGTCTAGACCCTGCGGTGGCCTACGAGTTCACCTCGGCCAACC TCTGTCTCGACTTCTACGACACCCTGGTGCGCTACGAGGGCGCCGACTTT ACCCATCCCAAGCCGTCGCTGGCCCAGAGCTGGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19797:9..194-

>mRNA_P-wetherbeei_contig19797.1.1 ID=mRNA_P-wetherbeei_contig19797.1.1|Name=mRNA_P-wetherbeei_contig19797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig19797:9..194- (Phaeothamnion wetherbeei SAG_119_79)
GAACCCGCCGGGGATCACAGCTCGACTCTGGTCGCCGCCGCGGCCATCGA
CGCCGTAAGTCTAGACCCTGCGGTGGCCTACGAGTTCACCTCGGCCAACC
TCTGTCTCGACTTCTACGACACCCTGGTGCGCTACGAGGGCGCCGACTTT
ACCCATCCCAAGCCGTCGCTGGCCCAGAGCTGGGAA
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