mRNA_P-wetherbeei_contig19618.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A7C4XL65_9HYPH (TIGR02300 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XL65_9HYPH) HSP 1 Score: 94.0 bits (232), Expect = 2.610e-22 Identity = 61/124 (49.19%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNK-EFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAGDVSGIIGG-VGEDEEE 366
M+TKQARGTKRTCQ+ CGSRFYDL+R+PI CP+CGS YVIASAPL+ A E K EFAD A+ P E+ GDVSGIIGG V DEEE
Sbjct: 1 MATKQARGTKRTCQNPECGSRFYDLDRDPIVCPICGSEYVIASAPLVGAAPEEKDQKAKKPEFADEVAVVPEAEVEGAEALAEIDTAEDAVAEEGDETFLEEEEEDGGDVSGIIGGTVAGDEEE 124
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: UPI00092FFA40 (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI00092FFA40) HSP 1 Score: 85.9 bits (211), Expect = 4.190e-19 Identity = 60/127 (47.24%), Postives = 68/127 (53.54%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPL-MADAVAEAPAAPNKEFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE---AGDVSGIIGG-VGEDEEE 366
M+TKQARGTKRTCQS CG+RFYDLNR PI CP+CGS Y +AS+PL +A AV E + AD G AP DA EE GDVS IIGG V E +EE
Sbjct: 1 MATKQARGTKRTCQSGECGARFYDLNRNPIICPICGSIYELASSPLALAAAVGEEKPSRRGRKADYGEKAPVDATAEGADDEALPDVEEDGEAIGSDEDETFLEEEEEEGGDVSNIIGGPVSEGDEE 127
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: UPI000381E14B (TIGR02300 family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000381E14B) HSP 1 Score: 83.6 bits (205), Expect = 3.190e-18 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAE 159
M+TKQARGTKRTCQS+ CG+RFYDLNR+PITCP+CGS Y +AS+PL A E
Sbjct: 1 MATKQARGTKRTCQSNECGARFYDLNRDPITCPICGSIYELASSPLALAAAGE 53
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A2S5N058_HYPSQ (TIGR02300 family protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5N058_HYPSQ) HSP 1 Score: 82.8 bits (203), Expect = 6.550e-18 Identity = 57/127 (44.88%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIA--SAPLMADAVAEAPAAPNKEFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE-AGDVSGIIGG-VGEDEEEV 369
MSTK ARGTKRTCQS+ CG+R+YDLNR+PI+CP+CG+ Y IA + P+ A + E P KE LAP A EE GDVS IIGG V E EEEV
Sbjct: 1 MSTKAARGTKRTCQSNECGARYYDLNRDPISCPICGTIYTIAHSAVPITAAMIDEKPRKAKKELVADKELAPEAASEVEGDEALVDIEEAEDIPADDDETFLEPEEEEGGDVSNIIGGPVAEGEEEV 127
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A2S5P937_HYPSQ (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P937_HYPSQ) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16 Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMA 144
M+TK ARGTKRTCQS CGSRFYDLNR+PITCP+CGS Y IAS P A
Sbjct: 1 MATKAARGTKRTCQSDECGSRFYDLNRDPITCPICGSIYEIASNPAAA 48
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A537RRT6_9PROT (TIGR02300 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RRT6_9PROT) HSP 1 Score: 79.0 bits (193), Expect = 2.440e-16 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAA 171
MSTK RGTKR+CQ+S CGSRFYDLNR+PI+CP+CGS Y +A +P+ A A PAA
Sbjct: 1 MSTKADRGTKRSCQNSQCGSRFYDLNRDPISCPICGSVYELAVSPMAVAAAAPVPAA 57
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: V5SI72_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SI72_9HYPH) HSP 1 Score: 77.4 bits (189), Expect = 8.170e-16 Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAE 159
M+TKQARGTKRTCQSS C +RFYDL R PI CP+CG+ Y +AS+PL A A +E
Sbjct: 1 MATKQARGTKRTCQSSECDARFYDLGRSPIVCPICGTVYELASSPLGAAAASE 53
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A6I0E9W5_HYPSQ (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E9W5_HYPSQ) HSP 1 Score: 76.6 bits (187), Expect = 1.550e-15 Identity = 51/123 (41.46%), Postives = 60/123 (48.78%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNKEFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE-AGDVSGIIGGVGEDEEE 366
M+T + RGTKRTCQ+S CG+RFYDLNR PI CP+CG+ Y IA +P A VA+ A K GDA EE GDVS IIGG E E+E
Sbjct: 1 MATNKDRGTKRTCQNSECGARFYDLNRSPIVCPICGAKYAIAHSPTTAAVVAQEEKAQRKVKKPEFEPVAGDAEAEDALVDVEADEAEDAAGEEADETFLEEEEEDGGDVSNIIGGPVEGEDE 123
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: UPI0019A5568D (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019A5568D) HSP 1 Score: 75.9 bits (185), Expect = 3.020e-15 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNK 180
M+T + RGTKRTCQ+ CG+RFYDLNR PI CP+CGS Y IA +P A AVA+ A K
Sbjct: 1 MATNKDRGTKRTCQNGECGARFYDLNRSPIVCPICGSKYAIAHSPSAAAAVAQEERAQRK 60
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A6I3KIJ7_9HYPH (TIGR02300 family protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KIJ7_9HYPH) HSP 1 Score: 75.1 bits (183), Expect = 6.510e-15 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNK 180
M+T + RGTKRTCQ+ CG+RFYDLNR P+ CP+CGS Y IA +P A A+A+ A K
Sbjct: 1 MATNKDRGTKRTCQNGDCGARFYDLNRSPVLCPICGSKYAIAHSPTAAAAIAQEERAQRK 60 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19618.1.1 >prot_P-wetherbeei_contig19618.1.1 ID=prot_P-wetherbeei_contig19618.1.1|Name=mRNA_P-wetherbeei_contig19618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAback to top mRNA from alignment at P-wetherbeei_contig19618:178..549- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19618.1.1 ID=mRNA_P-wetherbeei_contig19618.1.1|Name=mRNA_P-wetherbeei_contig19618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig19618:178..549- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19618:178..549- >mRNA_P-wetherbeei_contig19618.1.1 ID=mRNA_P-wetherbeei_contig19618.1.1|Name=mRNA_P-wetherbeei_contig19618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig19618:178..549- (Phaeothamnion wetherbeei SAG_119_79)back to top |