mRNA_P-wetherbeei_contig19618.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19618.1.1
Unique NamemRNA_P-wetherbeei_contig19618.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A7C4XL65_9HYPH (TIGR02300 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XL65_9HYPH)

HSP 1 Score: 94.0 bits (232), Expect = 2.610e-22
Identity = 61/124 (49.19%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNK-EFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAGDVSGIIGG-VGEDEEE 366
            M+TKQARGTKRTCQ+  CGSRFYDL+R+PI CP+CGS YVIASAPL+  A  E      K EFAD  A+ P                                 E+ GDVSGIIGG V  DEEE
Sbjct:    1 MATKQARGTKRTCQNPECGSRFYDLDRDPIVCPICGSEYVIASAPLVGAAPEEKDQKAKKPEFADEVAVVPEAEVEGAEALAEIDTAEDAVAEEGDETFLEEEEEDGGDVSGIIGGTVAGDEEE 124          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: UPI00092FFA40 (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI00092FFA40)

HSP 1 Score: 85.9 bits (211), Expect = 4.190e-19
Identity = 60/127 (47.24%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPL-MADAVAEAPAAPNKEFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE---AGDVSGIIGG-VGEDEEE 366
            M+TKQARGTKRTCQS  CG+RFYDLNR PI CP+CGS Y +AS+PL +A AV E   +     AD G  AP DA                              EE    GDVS IIGG V E +EE
Sbjct:    1 MATKQARGTKRTCQSGECGARFYDLNRNPIICPICGSIYELASSPLALAAAVGEEKPSRRGRKADYGEKAPVDATAEGADDEALPDVEEDGEAIGSDEDETFLEEEEEEGGDVSNIIGGPVSEGDEE 127          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: UPI000381E14B (TIGR02300 family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000381E14B)

HSP 1 Score: 83.6 bits (205), Expect = 3.190e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAE 159
            M+TKQARGTKRTCQS+ CG+RFYDLNR+PITCP+CGS Y +AS+PL   A  E
Sbjct:    1 MATKQARGTKRTCQSNECGARFYDLNRDPITCPICGSIYELASSPLALAAAGE 53          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A2S5N058_HYPSQ (TIGR02300 family protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5N058_HYPSQ)

HSP 1 Score: 82.8 bits (203), Expect = 6.550e-18
Identity = 57/127 (44.88%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIA--SAPLMADAVAEAPAAPNKEFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE-AGDVSGIIGG-VGEDEEEV 369
            MSTK ARGTKRTCQS+ CG+R+YDLNR+PI+CP+CG+ Y IA  + P+ A  + E P    KE      LAP  A                              EE  GDVS IIGG V E EEEV
Sbjct:    1 MSTKAARGTKRTCQSNECGARYYDLNRDPISCPICGTIYTIAHSAVPITAAMIDEKPRKAKKELVADKELAPEAASEVEGDEALVDIEEAEDIPADDDETFLEPEEEEGGDVSNIIGGPVAEGEEEV 127          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A2S5P937_HYPSQ (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P937_HYPSQ)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMA 144
            M+TK ARGTKRTCQS  CGSRFYDLNR+PITCP+CGS Y IAS P  A
Sbjct:    1 MATKAARGTKRTCQSDECGSRFYDLNRDPITCPICGSIYEIASNPAAA 48          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A537RRT6_9PROT (TIGR02300 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RRT6_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 2.440e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAA 171
            MSTK  RGTKR+CQ+S CGSRFYDLNR+PI+CP+CGS Y +A +P+   A A  PAA
Sbjct:    1 MSTKADRGTKRSCQNSQCGSRFYDLNRDPISCPICGSVYELAVSPMAVAAAAPVPAA 57          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: V5SI72_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SI72_9HYPH)

HSP 1 Score: 77.4 bits (189), Expect = 8.170e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAE 159
            M+TKQARGTKRTCQSS C +RFYDL R PI CP+CG+ Y +AS+PL A A +E
Sbjct:    1 MATKQARGTKRTCQSSECDARFYDLGRSPIVCPICGTVYELASSPLGAAAASE 53          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A6I0E9W5_HYPSQ (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E9W5_HYPSQ)

HSP 1 Score: 76.6 bits (187), Expect = 1.550e-15
Identity = 51/123 (41.46%), Postives = 60/123 (48.78%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNKEFADAGALAPGDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE-AGDVSGIIGGVGEDEEE 366
            M+T + RGTKRTCQ+S CG+RFYDLNR PI CP+CG+ Y IA +P  A  VA+   A  K          GDA                              EE  GDVS IIGG  E E+E
Sbjct:    1 MATNKDRGTKRTCQNSECGARFYDLNRSPIVCPICGAKYAIAHSPTTAAVVAQEEKAQRKVKKPEFEPVAGDAEAEDALVDVEADEAEDAAGEEADETFLEEEEEDGGDVSNIIGGPVEGEDE 123          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: UPI0019A5568D (TIGR02300 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019A5568D)

HSP 1 Score: 75.9 bits (185), Expect = 3.020e-15
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNK 180
            M+T + RGTKRTCQ+  CG+RFYDLNR PI CP+CGS Y IA +P  A AVA+   A  K
Sbjct:    1 MATNKDRGTKRTCQNGECGARFYDLNRSPIVCPICGSKYAIAHSPSAAAAVAQEERAQRK 60          
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Match: A0A6I3KIJ7_9HYPH (TIGR02300 family protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KIJ7_9HYPH)

HSP 1 Score: 75.1 bits (183), Expect = 6.510e-15
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADAVAEAPAAPNK 180
            M+T + RGTKRTCQ+  CG+RFYDLNR P+ CP+CGS Y IA +P  A A+A+   A  K
Sbjct:    1 MATNKDRGTKRTCQNGDCGARFYDLNRSPVLCPICGSKYAIAHSPTAAAAIAQEERAQRK 60          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XL65_9HYPH2.610e-2249.19TIGR02300 family protein n=1 Tax=Hyphomicrobiales ... [more]
UPI00092FFA404.190e-1947.24TIGR02300 family protein n=1 Tax=Hyphomicrobium sp... [more]
UPI000381E14B3.190e-1871.70TIGR02300 family protein n=1 Tax=Hyphomicrobium za... [more]
A0A2S5N058_HYPSQ6.550e-1844.88TIGR02300 family protein n=2 Tax=unclassified Hyph... [more]
A0A2S5P937_HYPSQ1.050e-1677.08TIGR02300 family protein n=1 Tax=Hyphomicrobium sp... [more]
A0A537RRT6_9PROT2.440e-1664.91TIGR02300 family protein n=1 Tax=Alphaproteobacter... [more]
V5SI72_9HYPH8.170e-1667.92Uncharacterized protein n=1 Tax=Hyphomicrobium nit... [more]
A0A6I0E9W5_HYPSQ1.550e-1541.46TIGR02300 family protein n=1 Tax=Hyphomicrobium sp... [more]
UPI0019A5568D3.020e-1560.00TIGR02300 family protein n=1 Tax=Hyphomicrobium sp... [more]
A0A6I3KIJ7_9HYPH6.510e-1556.67TIGR02300 family protein n=1 Tax=Hyphomicrobium al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19618contigP-wetherbeei_contig19618:178..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1267005.KB911265_gene3583
Preferred nameMA20_24185
PFAMsFYDLN_acid
Model size372
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.23e-19
EggNOG OGsCOG4530@1|root,COG4530@2|Bacteria,1N85Z@1224|Proteobacteria,2UF7V@28211|Alphaproteobacteria,3N7E5@45401|Hyphomicrobiaceae
DescriptionProtein of unknown function (FYDLN_acid)
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.399995-CDS-P-wetherbeei_contig19618:177..5491683186177.399995-CDS-P-wetherbeei_contig19618:177..549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19618 178..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19618.1.1prot_P-wetherbeei_contig19618.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19618 178..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19618.1.1

>prot_P-wetherbeei_contig19618.1.1 ID=prot_P-wetherbeei_contig19618.1.1|Name=mRNA_P-wetherbeei_contig19618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MSTKQARGTKRTCQSSSCGSRFYDLNREPITCPVCGSSYVIASAPLMADA
VAEAPAAPNKEFADAGALAPGDAPEVAPEDLPDVEGAEEPVAAEEDETFL
EEEEEAGDVSGIIGGVGEDEEEV*
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mRNA from alignment at P-wetherbeei_contig19618:178..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19618.1.1 ID=mRNA_P-wetherbeei_contig19618.1.1|Name=mRNA_P-wetherbeei_contig19618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig19618:178..549- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACAAAGCAAGCGCGCGGCACCAAGCGCACGTGCCAAAGCTCCAG TTGTGGATCGCGATTCTACGATCTCAACCGGGAACCGATCACCTGCCCGG TCTGCGGATCGAGCTACGTCATCGCATCCGCTCCTTTGATGGCGGACGCT GTTGCGGAAGCGCCTGCCGCTCCCAACAAGGAATTCGCGGACGCGGGTGC ACTGGCGCCGGGCGATGCGCCGGAGGTTGCGCCGGAGGATCTACCGGACG TGGAAGGCGCCGAGGAGCCGGTTGCTGCGGAAGAGGACGAGACCTTCCTC GAGGAGGAAGAAGAGGCGGGCGACGTGTCCGGCATCATCGGCGGCGTCGG CGAGGACGAGGAAGAGGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19618:178..549-

>mRNA_P-wetherbeei_contig19618.1.1 ID=mRNA_P-wetherbeei_contig19618.1.1|Name=mRNA_P-wetherbeei_contig19618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig19618:178..549- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACAAAGCAAGCGCGCGGCACCAAGCGCACGTGCCAAAGCTCCAG
TTGTGGATCGCGATTCTACGATCTCAACCGGGAACCGATCACCTGCCCGG
TCTGCGGATCGAGCTACGTCATCGCATCCGCTCCTTTGATGGCGGACGCT
GTTGCGGAAGCGCCTGCCGCTCCCAACAAGGAATTCGCGGACGCGGGTGC
ACTGGCGCCGGGCGATGCGCCGGAGGTTGCGCCGGAGGATCTACCGGACG
TGGAAGGCGCCGAGGAGCCGGTTGCTGCGGAAGAGGACGAGACCTTCCTC
GAGGAGGAAGAAGAGGCGGGCGACGTGTCCGGCATCATCGGCGGCGTCGG
CGAGGACGAGGAAGAGGTCTGA
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