mRNA_P-wetherbeei_contig19446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19446.1.1
Unique NamemRNA_P-wetherbeei_contig19446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A661FP61_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A661FP61_9GAMM)

HSP 1 Score: 161 bits (408), Expect = 1.320e-47
Identity = 76/118 (64.41%), Postives = 91/118 (77.12%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRG-NSATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MMRP+N LPAVYLC   VDFR  INGLA  V+ ALL DP SEQLF F NRRR +VKILYWER+GF +WQKRLE+ RF WPR  +S  +TL+GQ+LNWLLDG+D+  +RPH  L ++ V
Sbjct:    1 MMRPSNDLPAVYLCRDVVDFRKGINGLAIVVEEALLQDPFSEQLFVFCNRRRDKVKILYWERSGFCMWQKRLEKARFKWPRKVDSEVITLTGQQLNWLLDGYDVMRFRPHERLHFSSV 118          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A1Y2KCK8_9PROT (Putative IS66 Orf2 family protein n=3 Tax=Magnetofaba TaxID=1472292 RepID=A0A1Y2KCK8_9PROT)

HSP 1 Score: 160 bits (405), Expect = 3.740e-47
Identity = 78/119 (65.55%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRGNSATV-TLSGQELNWLLDGFDLRHWRPHAPLSYAGVA 656
            MMRPAN LP VYLC  PVDFR  I GLAA V+  L LDPLS +LF FTNRRRT VKILYWERNGF LWQKRLE++RFHW R     V  +SGQ+LNWLLDG+D+    PH  L Y  V+
Sbjct:    1 MMRPANDLPDVYLCREPVDFRKGIAGLAALVEAELGLDPLSSRLFVFTNRRRTGVKILYWERNGFCLWQKRLEQERFHWLRRTDGVVGRISGQQLNWLLDGYDITRITPHKTLEYTCVS 119          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A2N6G8L3_9GAMM (Uncharacterized protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A2N6G8L3_9GAMM)

HSP 1 Score: 159 bits (403), Expect = 7.520e-47
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRG-NSATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MMRP N LP  +LC  PVDFR  I GLA  V+  L LDP SE+LF FTNRRR  VKILYWERNGF LWQK+LER+RF WP   +SA VTL+GQ+LNWLLDG+D+    PH  L Y  +
Sbjct:    1 MMRPGNELPEAFLCKVPVDFRKGIQGLAVLVEAELTLDPFSERLFVFTNRRRDAVKILYWERNGFCLWQKKLERERFKWPNDLDSAVVTLTGQQLNWLLDGYDICRMTPHKALKYKSL 118          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A2N1WCN9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-8 TaxID=2013804 RepID=A0A2N1WCN9_9GAMM)

HSP 1 Score: 159 bits (401), Expect = 1.460e-46
Identity = 76/117 (64.96%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  306 MRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRGNSATV-TLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MRP+N LP VYLC   VDFRL INGLAA V+  L LDP S QLF F NR R R+KILYWER+GF LWQKRLE  RFHWPR    TV TL+GQ+LNWLLDG+D+   +PH  L Y+ V
Sbjct:    1 MRPSNELPLVYLCREAVDFRLGINGLAARVESVLQLDPFSAQLFVFCNRARDRIKILYWERSGFCLWQKRLEEARFHWPRRLDGTVITLTGQQLNWLLDGYDVMRLQPHTTLRYSRV 117          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A7C2K4Z5_9GAMM (Transposase n=1 Tax=Mizugakiibacter sp. TaxID=1972610 RepID=A0A7C2K4Z5_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 4.300e-46
Identity = 75/118 (63.56%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRG-NSATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MMRP+N LPAVYLC   VDFR  INGLA  V+ AL  DP SEQLF F NR+R ++KILYWERNGF LWQKRLER RF WPR   S  +TL+GQ+LNWLLDG+D+   +PH  L +  V
Sbjct:    1 MMRPSNELPAVYLCREVVDFRKGINGLAVLVEEALQHDPFSEQLFVFCNRKRDKIKILYWERNGFCLWQKRLERARFKWPRQMESDVITLTGQQLNWLLDGYDVMRLQPHERLHFRSV 118          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A661GUX2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GUX2_9GAMM)

HSP 1 Score: 157 bits (397), Expect = 6.090e-46
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRGNSA-TVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MMRP+N +PAVYLC  PVDFR  INGLA  V+  L ++P +EQL+ F NRRR ++K+LYWE NGF LWQKRLE+ RF+WPR +S   VTL+ Q+LNWLLDG+D+   +PH  L Y  V
Sbjct:    1 MMRPSNDIPAVYLCRDPVDFRRGINGLAVLVEDTLRMNPFAEQLYIFCNRRRNQIKVLYWEANGFCLWQKRLEKSRFYWPRKSSEEVVTLTAQQLNWLLDGYDISRLQPHGKLCYTSV 118          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A6L8G583_9RHOB (IS66 family insertion sequence element accessory protein TnpB n=1 Tax=Boseongicola sp. SB0673_bin_14 TaxID=2604848 RepID=A0A6L8G583_9RHOB)

HSP 1 Score: 157 bits (397), Expect = 7.120e-46
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRGNSATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            M+RPA+    V+LCV PVDFR QI GLA  VQ  L +DP S QLF FTNRRRT+ +ILYWER GFVLWQKRLER RF WPR   A V+LSG +LN+LLDG+DL   RPHA L+YA +
Sbjct:    7 MIRPAHEGIEVWLCVEPVDFRKQITGLATLVQDTLAMDPFSAQLFVFTNRRRTQCRILYWERCGFVLWQKRLERARFVWPRHAEAVVSLSGAQLNFLLDGYDLWRMRPHARLAYASM 123          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A370DHF2_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A370DHF2_9GAMM)

HSP 1 Score: 155 bits (393), Expect = 2.460e-45
Identity = 76/118 (64.41%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRGNS-ATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MMRP++ LPAVYLC   VDFR  INGLA  V+  L  DP SEQLF F NR+R +VKILYWERNGF LWQKRLER RF WPR  +   VTLSGQ+LNWLLDG+D+   +PH  L Y+ V
Sbjct:    1 MMRPSSDLPAVYLCRNIVDFRKGINGLAVLVEEVLQHDPFSEQLFVFCNRKRDKVKILYWERNGFCLWQKRLERARFKWPRRVADEVVTLSGQQLNWLLDGYDVMRMQPHDRLHYSSV 118          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A7C2P2E7_9GAMM (Transposase n=1 Tax=Mizugakiibacter sp. TaxID=1972610 RepID=A0A7C2P2E7_9GAMM)

HSP 1 Score: 155 bits (391), Expect = 4.780e-45
Identity = 74/117 (63.25%), Postives = 85/117 (72.65%), Query Frame = 3
Query:  306 MRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRG-NSATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MRP+N LP VYLC   VDFR  INGL+  V+ AL LDP SEQLF F NR+R RVK+LYWERNGF LWQKRLER RF WPR      V L+GQ+LNWLLDG+D+   +PH  L Y+ V
Sbjct:    1 MRPSNELPVVYLCRDIVDFRKGINGLSVLVEEALKLDPFSEQLFVFCNRKRDRVKMLYWERNGFCLWQKRLERARFKWPRRVTDEVVVLNGQQLNWLLDGYDVMRMQPHERLHYSSV 117          
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Match: A0A359ESF3_9GAMM (Uncharacterized protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A359ESF3_9GAMM)

HSP 1 Score: 153 bits (386), Expect = 2.820e-44
Identity = 75/118 (63.56%), Postives = 86/118 (72.88%), Query Frame = 3
Query:  303 MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNRRRTRVKILYWERNGFVLWQKRLERDRFHWPRGNS-ATVTLSGQELNWLLDGFDLRHWRPHAPLSYAGV 653
            MMRPAN  PAVYLC   +DFR  INGLA  V+ AL  DP SEQLF F NRRRT VKILYWER+GF LWQKRLE+ RF WPR +  + +TL+ Q+LNWLLDG D+   +PHA L Y  V
Sbjct:    1 MMRPANDGPAVYLCRDSIDFRKGINGLAILVEQALEQDPFSEQLFVFCNRRRTSVKILYWERSGFCLWQKRLEQARFPWPRLHEHSVITLTPQQLNWLLDGIDITRLQPHASLQYDSV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A661FP61_9GAMM1.320e-4764.41Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A1Y2KCK8_9PROT3.740e-4765.55Putative IS66 Orf2 family protein n=3 Tax=Magnetof... [more]
A0A2N6G8L3_9GAMM7.520e-4762.71Uncharacterized protein n=1 Tax=Sedimenticola sp. ... [more]
A0A2N1WCN9_9GAMM1.460e-4664.96Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7C2K4Z5_9GAMM4.300e-4663.56Transposase n=1 Tax=Mizugakiibacter sp. TaxID=1972... [more]
A0A661GUX2_9GAMM6.090e-4659.32Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6L8G583_9RHOB7.120e-4664.96IS66 family insertion sequence element accessory p... [more]
A0A370DHF2_9GAMM2.460e-4564.41Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A7C2P2E7_9GAMM4.780e-4563.25Transposase n=1 Tax=Mizugakiibacter sp. TaxID=1972... [more]
A0A359ESF3_9GAMM2.820e-4463.56Uncharacterized protein n=1 Tax=Halieaceae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19446contigP-wetherbeei_contig19446:165..823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121937.AUHJ01000066_gene15
PFAMsTnpB_IS66
Model size659
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K07484
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.01e-45
EggNOG OGsCOG3436@1|root,COG3436@2|Bacteria,1MZFT@1224|Proteobacteria,1SABV@1236|Gammaproteobacteria,46851@72275|Alteromonadaceae
DescriptionCOG3436 Transposase and inactivated derivatives
Cds size357
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186172.4975398-CDS-P-wetherbeei_contig19446:164..5211683186172.4975398-CDS-P-wetherbeei_contig19446:164..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19446 165..521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186172.509398-UTR-P-wetherbeei_contig19446:521..8231683186172.509398-UTR-P-wetherbeei_contig19446:521..823Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19446 522..823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19446.1.1prot_P-wetherbeei_contig19446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19446 165..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19446.1.1

>prot_P-wetherbeei_contig19446.1.1 ID=prot_P-wetherbeei_contig19446.1.1|Name=mRNA_P-wetherbeei_contig19446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MMRPANSLPAVYLCVAPVDFRLQINGLAACVQGALLLDPLSEQLFAFTNR
RRTRVKILYWERNGFVLWQKRLERDRFHWPRGNSATVTLSGQELNWLLDG
FDLRHWRPHAPLSYAGVA*
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mRNA from alignment at P-wetherbeei_contig19446:165..823-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19446.1.1 ID=mRNA_P-wetherbeei_contig19446.1.1|Name=mRNA_P-wetherbeei_contig19446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=659bp|location=Sequence derived from alignment at P-wetherbeei_contig19446:165..823- (Phaeothamnion wetherbeei SAG_119_79)
TCGAAGCGTTCGTCGTTGACCACGCGTCAGCAGTTTTGGGTCGCGCACCT TAAGGCCTGCGCTGAGCGTGGTTTGACGTTGTCGGTCTACGCTGCTGAGC AGGGTTTGTCGGTCGGCGCATTGAAGCAAGCCAAGACGCGCCTTCGCGGG CTGGGATTATGGCCGGTCCCAGTGCCCCGTTTCGTCCACGCACAAATCGC GCCGACGCCTGTGATGGTTCGAGTCTCGTTGCCCAACGGCGTAGTGGTCG AGACTGCCGGTAGTGAGCTGGGTGCGGTGTTGTCGGCGGCGGCGCGCCTG GCATGATGCGCCCGGCGAACTCGTTGCCTGCGGTCTACTTGTGCGTGGCA CCGGTAGATTTCCGGCTGCAGATCAACGGGCTCGCGGCATGCGTTCAAGG AGCGCTGCTGCTCGACCCGTTGTCCGAGCAATTGTTCGCCTTCACCAACC GGCGGCGCACGCGAGTGAAGATCTTGTACTGGGAGCGCAACGGCTTCGTG CTGTGGCAGAAACGACTCGAGCGTGACCGCTTTCACTGGCCGCGGGGTAA CAGTGCGACAGTGACCCTGAGTGGCCAGGAGTTGAACTGGTTGCTGGACG GCTTCGACCTGCGCCACTGGCGACCGCATGCGCCCTTAAGCTACGCCGGC GTGGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19446:165..823-

>mRNA_P-wetherbeei_contig19446.1.1 ID=mRNA_P-wetherbeei_contig19446.1.1|Name=mRNA_P-wetherbeei_contig19446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig19446:165..823- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGCCCGGCGAACTCGTTGCCTGCGGTCTACTTGTGCGTGGCACC
GGTAGATTTCCGGCTGCAGATCAACGGGCTCGCGGCATGCGTTCAAGGAG
CGCTGCTGCTCGACCCGTTGTCCGAGCAATTGTTCGCCTTCACCAACCGG
CGGCGCACGCGAGTGAAGATCTTGTACTGGGAGCGCAACGGCTTCGTGCT
GTGGCAGAAACGACTCGAGCGTGACCGCTTTCACTGGCCGCGGGGTAACA
GTGCGACAGTGACCCTGAGTGGCCAGGAGTTGAACTGGTTGCTGGACGGC
TTCGACCTGCGCCACTGGCGACCGCATGCGCCCTTAAGCTACGCCGGCGT
GGCTTGA
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