mRNA_P-wetherbeei_contig19272.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: D8LQ52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ52_ECTSI) HSP 1 Score: 171 bits (432), Expect = 4.550e-45 Identity = 106/259 (40.93%), Postives = 135/259 (52.12%), Query Frame = 2
Query: 446 FVYETTATKDWRRRHQEAGVLNRLHGLAVVEDKGNAALLQCTMAVPTLESHVLPDRAAVAAWAASRWGSK----------------------------------TAAGSVACRLDAGAGAXGGTGDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLPAGDAFVLQRYVCRPLLRAGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHED--------------------DELVHITNLSRNKKTEGYPGQV 1060
FV+ETT TK +RRH++A VLNRL G V+EDK N LLQ M PTLES+ + R AVA WA R+ + T+A + + G G G+ DWWCVKA GNGG D+WVL + V L +++V+QRYV RP+L G+KFH RAY L RAD +AWLYR AY L+ASR + ++ DE VHI+NL+ NK TEG+PGQV
Sbjct: 112 FVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESYAVNGRNAVARWAQQRFKEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVG-NGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKMVTEALSEHESYVIQRYVARPMLWQGRKFHFRAYALLRADMSAWLYRTAYILSASRPYSLGGNDSRDDGVRVGAGVADMHRAAFADEFVHISNLAVNKHTEGHPGQV 369
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A835Z2B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B8_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.610e-32 Identity = 97/258 (37.60%), Postives = 128/258 (49.61%), Query Frame = 2
Query: 440 LAFVYETTATKDWRRRHQEAGVLNRLHGLAVVEDKGNAALLQCTMAVPTLESHVLPDRAAVAAWAASRWG-------------------SKTAAGSVACR-----------------------LDAGAGAXGGT------GDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLP-----AGDAFVLQRYVCRPLLR---AGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHEDDELVHITNLSRNKKTEG 1045
L FVYETT TKDW+ H+ A VLNRL G V+EDK + ALL MA P LESH++ + V AWA +RWG +++G+ AC L +GA A + DWWCVKA RGNGG DVWVL +A ++ +L G A+VLQRYV RPLL G K H R + + R D +AWL+ A L A + A + + +H+TNL+ +K+ G
Sbjct: 52 LDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPY-ALSDAGNPSIHLTNLAFSKRPGG 308
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7S2XVN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN0_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.440e-24 Identity = 67/174 (38.51%), Postives = 91/174 (52.30%), Query Frame = 2
Query: 581 PTLESHVLPDRAAVAAWAASRWG------------SKTAAGSVACRLDAGAGAXGGTGDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLPA--GDAFVLQRYVCRPLLRAGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHEDDELVHITNLSRNKKTEGYPGQV 1060
PTL++ ++ D+ + WA RWG + T V+ G G G G SDWW VK ++GNGG+D+WV+ + AVL + A + V Q YV RPLL G+KFH R Y L A + Y RAY LAA+ + D + HI+N++ NK GYPGQV
Sbjct: 1 PTLKTFIVRDKDGLRRWARERWGDPESSEVAPADNASTTTNQVSGAQPVGDGGGAGEG-SDWWMVKVSKGNGGSDIWVINQQNFRAVLEDISAVKEEELVCQEYVARPLLFHGRKFHFRCYALLAASMQGFFYDRAYILAATNQYRLEQ-PGDAMTHISNMAVNKHMAGYPGQV 172
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7J6M1I1_PEROL (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M1I1_PEROL) HSP 1 Score: 58.9 bits (141), Expect = 3.760e-6 Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 2
Query: 809 PRLPAG--DAFVLQRYVCRPLLRAGKKFHLRAYLLWR--ADGAAWLYRRAYA-LAASRDFEAHAHEDDELVHITNLSRNKKTEGY 1048
P LP G +A+V+Q+Y+ RPLL GKKF LR Y+L + W+YR+ +A L+ SR + ++ VH+TN++ K + GY
Sbjct: 52 PGLPPGVVEAYVVQKYIARPLLLGGKKFDLRLYVLVPNFSPLTVWVYRQGFARLSMSRYSKTKKSMENHAVHLTNVAVQKVSPGY 136
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7J6R2U3_PEROL (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R2U3_PEROL) HSP 1 Score: 57.8 bits (138), Expect = 1.610e-5 Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 2
Query: 815 LPAG--DAFVLQRYVCRPLLRAGKKFHLRAYLLWR--ADGAAWLYRRAYA-LAASRDFEAHAHEDDELVHITNLSRNKKTEGY 1048
LP+G +A+V+Q+Y+ RPLL GKKF LR Y+L + W+YR+ +A L+ SR + ++ VH+TN++ K + GY
Sbjct: 277 LPSGVVEAYVVQKYIARPLLLGGKKFDLRLYVLVPNFSPLTVWVYRQGFARLSMSRYSKTKKSMENHAVHLTNVAVQKVSPGY 359
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7J6Q6F0_PEROL (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6Q6F0_PEROL) HSP 1 Score: 57.0 bits (136), Expect = 2.430e-5 Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 2
Query: 815 LPAG--DAFVLQRYVCRPLLRAGKKFHLRAYLLWR--ADGAAWLYRRAYA-LAASRDFEAHAHEDDELVHITNLSRNKKTEGY 1048
LP G +A+V+Q+Y+ RPLL GKKF LR Y+L + W+YR+ +A L+ SR + ++ VH+TN++ K + GY
Sbjct: 181 LPPGVVEAYVVQKYIARPLLLGGKKFDLRLYVLVPNFSPLTVWVYRQGFARLSMSRYSKTKKSMENHAVHLTNVAVQKVSPGY 263
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7S2CXS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXS4_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 8.620e-5 Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 2
Query: 716 GDSDWWCVKATRGNGGTDVWVLRDISAA-AVLPRLPAGDAFVLQRYVCRPLLRAGKKFHLRAYLLWRADGAAWLY--RRAYALAASRDFEAH--AHEDDELVHITNLS 1024
G+S W VK + N G +V +L A L + +VLQRY+ RPLL G+KFH RAY+L A GA LY L+A + ++ E L H+TN +
Sbjct: 105 GESSLWIVKPSYANKGAEVVILESYEELEAHLLEWHSLREWVLQRYISRPLLFQGRKFHFRAYVL--AVGALKLYFWDEVLLLSAQQPYDGRDPTSESQRLAHLTNTA 210 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19272.1.1 >prot_P-wetherbeei_contig19272.1.1 ID=prot_P-wetherbeei_contig19272.1.1|Name=mRNA_P-wetherbeei_contig19272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp MTSPRQTAKSAAATSPLAFVYETTATKDWRRRHQEAGVLNRLHGLAVVEDback to top mRNA from alignment at P-wetherbeei_contig19272:58..1297- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19272.1.1 ID=mRNA_P-wetherbeei_contig19272.1.1|Name=mRNA_P-wetherbeei_contig19272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-wetherbeei_contig19272:58..1297- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19272:58..1297- >mRNA_P-wetherbeei_contig19272.1.1 ID=mRNA_P-wetherbeei_contig19272.1.1|Name=mRNA_P-wetherbeei_contig19272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig19272:58..1297- (Phaeothamnion wetherbeei SAG_119_79)back to top |