mRNA_P-wetherbeei_contig19272.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19272.1.1
Unique NamemRNA_P-wetherbeei_contig19272.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: D8LQ52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ52_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 4.550e-45
Identity = 106/259 (40.93%), Postives = 135/259 (52.12%), Query Frame = 2
Query:  446 FVYETTATKDWRRRHQEAGVLNRLHGLAVVEDKGNAALLQCTMAVPTLESHVLPDRAAVAAWAASRWGSK----------------------------------TAAGSVACRLDAGAGAXGGTGDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLPAGDAFVLQRYVCRPLLRAGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHED--------------------DELVHITNLSRNKKTEGYPGQV 1060
            FV+ETT TK  +RRH++A VLNRL G  V+EDK N  LLQ  M  PTLES+ +  R AVA WA  R+  +                                  T+A +   +     G  G  G+ DWWCVKA  GNGG D+WVL   +   V   L   +++V+QRYV RP+L  G+KFH RAY L RAD +AWLYR AY L+ASR +    ++                     DE VHI+NL+ NK TEG+PGQV
Sbjct:  112 FVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESYAVNGRNAVARWAQQRFKEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVG-NGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKMVTEALSEHESYVIQRYVARPMLWQGRKFHFRAYALLRADMSAWLYRTAYILSASRPYSLGGNDSRDDGVRVGAGVADMHRAAFADEFVHISNLAVNKHTEGHPGQV 369          
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A835Z2B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.610e-32
Identity = 97/258 (37.60%), Postives = 128/258 (49.61%), Query Frame = 2
Query:  440 LAFVYETTATKDWRRRHQEAGVLNRLHGLAVVEDKGNAALLQCTMAVPTLESHVLPDRAAVAAWAASRWG-------------------SKTAAGSVACR-----------------------LDAGAGAXGGT------GDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLP-----AGDAFVLQRYVCRPLLR---AGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHEDDELVHITNLSRNKKTEG 1045
            L FVYETT TKDW+  H+ A VLNRL G  V+EDK + ALL   MA P LESH++   + V AWA +RWG                     +++G+ AC                        L +GA A           + DWWCVKA RGNGG DVWVL   +A  ++ +L       G A+VLQRYV RPLL     G K H R + + R D +AWL+  A  L A   + A +   +  +H+TNL+ +K+  G
Sbjct:   52 LDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPY-ALSDAGNPSIHLTNLAFSKRPGG 308          
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7S2XVN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.440e-24
Identity = 67/174 (38.51%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  581 PTLESHVLPDRAAVAAWAASRWG------------SKTAAGSVACRLDAGAGAXGGTGDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLPA--GDAFVLQRYVCRPLLRAGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHEDDELVHITNLSRNKKTEGYPGQV 1060
            PTL++ ++ D+  +  WA  RWG            + T    V+     G G   G G SDWW VK ++GNGG+D+WV+   +  AVL  + A   +  V Q YV RPLL  G+KFH R Y L  A    + Y RAY LAA+  +       D + HI+N++ NK   GYPGQV
Sbjct:    1 PTLKTFIVRDKDGLRRWARERWGDPESSEVAPADNASTTTNQVSGAQPVGDGGGAGEG-SDWWMVKVSKGNGGSDIWVINQQNFRAVLEDISAVKEEELVCQEYVARPLLFHGRKFHFRCYALLAASMQGFFYDRAYILAATNQYRLEQ-PGDAMTHISNMAVNKHMAGYPGQV 172          
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7J6M1I1_PEROL (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M1I1_PEROL)

HSP 1 Score: 58.9 bits (141), Expect = 3.760e-6
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  809 PRLPAG--DAFVLQRYVCRPLLRAGKKFHLRAYLLWR--ADGAAWLYRRAYA-LAASRDFEAHAHEDDELVHITNLSRNKKTEGY 1048
            P LP G  +A+V+Q+Y+ RPLL  GKKF LR Y+L    +    W+YR+ +A L+ SR  +     ++  VH+TN++  K + GY
Sbjct:   52 PGLPPGVVEAYVVQKYIARPLLLGGKKFDLRLYVLVPNFSPLTVWVYRQGFARLSMSRYSKTKKSMENHAVHLTNVAVQKVSPGY 136          
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7J6R2U3_PEROL (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R2U3_PEROL)

HSP 1 Score: 57.8 bits (138), Expect = 1.610e-5
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  815 LPAG--DAFVLQRYVCRPLLRAGKKFHLRAYLLWR--ADGAAWLYRRAYA-LAASRDFEAHAHEDDELVHITNLSRNKKTEGY 1048
            LP+G  +A+V+Q+Y+ RPLL  GKKF LR Y+L    +    W+YR+ +A L+ SR  +     ++  VH+TN++  K + GY
Sbjct:  277 LPSGVVEAYVVQKYIARPLLLGGKKFDLRLYVLVPNFSPLTVWVYRQGFARLSMSRYSKTKKSMENHAVHLTNVAVQKVSPGY 359          
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7J6Q6F0_PEROL (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6Q6F0_PEROL)

HSP 1 Score: 57.0 bits (136), Expect = 2.430e-5
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  815 LPAG--DAFVLQRYVCRPLLRAGKKFHLRAYLLWR--ADGAAWLYRRAYA-LAASRDFEAHAHEDDELVHITNLSRNKKTEGY 1048
            LP G  +A+V+Q+Y+ RPLL  GKKF LR Y+L    +    W+YR+ +A L+ SR  +     ++  VH+TN++  K + GY
Sbjct:  181 LPPGVVEAYVVQKYIARPLLLGGKKFDLRLYVLVPNFSPLTVWVYRQGFARLSMSRYSKTKKSMENHAVHLTNVAVQKVSPGY 263          
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Match: A0A7S2CXS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXS4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.620e-5
Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  716 GDSDWWCVKATRGNGGTDVWVLRDISAA-AVLPRLPAGDAFVLQRYVCRPLLRAGKKFHLRAYLLWRADGAAWLY--RRAYALAASRDFEAH--AHEDDELVHITNLS 1024
            G+S  W VK +  N G +V +L       A L    +   +VLQRY+ RPLL  G+KFH RAY+L  A GA  LY       L+A + ++      E   L H+TN +
Sbjct:  105 GESSLWIVKPSYANKGAEVVILESYEELEAHLLEWHSLREWVLQRYISRPLLFQGRKFHFRAYVL--AVGALKLYFWDEVLLLSAQQPYDGRDPTSESQRLAHLTNTA 210          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19272.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LQ52_ECTSI4.550e-4540.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z2B8_9STRA2.610e-3237.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XVN0_9STRA3.440e-2438.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7J6M1I1_PEROL3.760e-640.00Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Pe... [more]
A0A7J6R2U3_PEROL1.610e-539.76Tubulin--tyrosine ligase-like protein 9 (Fragment)... [more]
A0A7J6Q6F0_PEROL2.430e-539.76Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Pe... [more]
A0A7S2CXS4_9STRA8.620e-537.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19272contigP-wetherbeei_contig19272:58..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQ52
Preferred nameTtll2
PFAMsTTL
Model size1060
Max annot lvl2759|Eukaryota
KEGG koko:K16608
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.7e-48
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-26_006110.4
Descriptionprotein polyglycylation
Cds size669
COG categoryS
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.6598048-CDS-P-wetherbeei_contig19272:57..4371683186168.6598048-CDS-P-wetherbeei_contig19272:57..437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19272 58..437 -
1683186168.671512-CDS-P-wetherbeei_contig19272:617..9061683186168.671512-CDS-P-wetherbeei_contig19272:617..906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19272 618..906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.6806238-UTR-P-wetherbeei_contig19272:906..12971683186168.6806238-UTR-P-wetherbeei_contig19272:906..1297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19272 907..1297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19272.1.1prot_P-wetherbeei_contig19272.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19272 58..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19272.1.1

>prot_P-wetherbeei_contig19272.1.1 ID=prot_P-wetherbeei_contig19272.1.1|Name=mRNA_P-wetherbeei_contig19272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
MTSPRQTAKSAAATSPLAFVYETTATKDWRRRHQEAGVLNRLHGLAVVED
KGNAALLQCTMAVPTLESHVLPDRAAVAAWAASRWGSKTAAGSVACRLDA
GAGAGGGTGDSDWWCVKATRGNGGTDVWVLRDISAAAVLPRLPAGDAFVL
QRYVCRPLLRAGKKFHLRAYLLWRADGAAWLYRRAYALAASRDFEAHAHE
DDELVHITNLSRNKKTEGYPGQV
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mRNA from alignment at P-wetherbeei_contig19272:58..1297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19272.1.1 ID=mRNA_P-wetherbeei_contig19272.1.1|Name=mRNA_P-wetherbeei_contig19272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-wetherbeei_contig19272:58..1297- (Phaeothamnion wetherbeei SAG_119_79)
TGTAAGAGGGTAGGATATCAAACACCGTTTACCTGCCCACCTGTACTGCT ATAGAAGCTCCAGGCATCTGAAGGCTTTGCAACATTCTATCGGTGGAAGT CCCACTCGCAAACTAAATTGACAGCACCATGTCGGCGTTCAGCGGAGACG CGCCAGCAACGCCCCAACCGCTCGTGTTCCGCGTCACGGGGAAATCGGCC TGCGACCGTCTTATACCTCTGCTTCTCGGGCAAAACTGGGGATCGGGTGT CACGTGGATCCAAGCAAACGATGATCAGGTAGTAAGTCTCCCAGTCTCTC TCCGTATCACTAGTCAAAGCCCGCTAGTTCCCCACAAAAGGAGTTCACGC ATTTACCTGCTCGTTGTTGTAAAGCTTGTAGTTCCTACCACATGACCTCT CCTCGGCAGACTGCGAAATCGGCGGCAGCGACGTCGCCCCTCGCCTTTGT CTACGAAACCACGGCGACGAAGGACTGGCGGCGGCGCCACCAGGAGGCCG GTGTCCTGAACCGCCTGCATGGGCTCGCCGTCGTCGAGGACAAGGGCAAC GCGGCGCTGCTGCAGTGCACCATGGCTGTCCCGACACTCGAGTCCCACGT CCTGCCAGACCGCGCCGCCGTCGCCGCCTGGGCCGCCTCCCGCTGGGGCA GCAAAACCGCTGCTGGCAGCGTCGCCTGCCGTTGTACGGATCCCGCCGCA TCGGCAGCGGCAGGATCTGTTATGACCGCTCCTGTCGACATGGATGACGA CGTTGGCGCTGGTGGCGGCTCTAGAGGAGGCGAAGGTAATGCCGCACTCA GCCGTGCAGCAGCAGCGGCAGCAAACGGTGGAGGCGGAAATTGTGCCGTA GAAGCGGCAGGCCTCGACGCCGGCGCTGGCGCTGGCGGCGGCACCGGTGA CAGCGACTGGTGGTGCGTCAAGGCCACCCGCGGCAACGGCGGCACCGACG TCTGGGTCCTCCGCGATATCTCCGCCGCCGCCGTGCTGCCGCGGCTGCCC GCCGGCGACGCCTTCGTCCTCCAGCGCTATGTCTGCCGGCCGCTGCTCCG CGCTGGCAAAAAGTTCCACCTGCGCGCGTATCTGCTCTGGCGCGCGGACG GCGCGGCGTGGCTGTACCGCCGCGCGTACGCGCTGGCGGCGAGCCGCGAC TTCGAGGCGCATGCGCACGAGGATGACGAGCTGGTGCACATTACCAACCT GTCGAGGAACAAGAAGACGGAGGGGTACCCGGGGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19272:58..1297-

>mRNA_P-wetherbeei_contig19272.1.1 ID=mRNA_P-wetherbeei_contig19272.1.1|Name=mRNA_P-wetherbeei_contig19272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig19272:58..1297- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCTCCTCGGCAGACTGCGAAATCGGCGGCAGCGACGTCGCCCCT
CGCCTTTGTCTACGAAACCACGGCGACGAAGGACTGGCGGCGGCGCCACC
AGGAGGCCGGTGTCCTGAACCGCCTGCATGGGCTCGCCGTCGTCGAGGAC
AAGGGCAACGCGGCGCTGCTGCAGTGCACCATGGCTGTCCCGACACTCGA
GTCCCACGTCCTGCCAGACCGCGCCGCCGTCGCCGCCTGGGCCGCCTCCC
GCTGGGGCAGCAAAACCGCTGCTGGCAGCGTCGCCTGCCGCCTCGACGCC
GGCGCTGGCGCTGGCGGCGGCACCGGTGACAGCGACTGGTGGTGCGTCAA
GGCCACCCGCGGCAACGGCGGCACCGACGTCTGGGTCCTCCGCGATATCT
CCGCCGCCGCCGTGCTGCCGCGGCTGCCCGCCGGCGACGCCTTCGTCCTC
CAGCGCTATGTCTGCCGGCCGCTGCTCCGCGCTGGCAAAAAGTTCCACCT
GCGCGCGTATCTGCTCTGGCGCGCGGACGGCGCGGCGTGGCTGTACCGCC
GCGCGTACGCGCTGGCGGCGAGCCGCGACTTCGAGGCGCATGCGCACGAG
GATGACGAGCTGGTGCACATTACCAACCTGTCGAGGAACAAGAAGACGGA
GGGGTACCCGGGGCAGGTG
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