mRNA_P-wetherbeei_contig19254.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19254.1.1
Unique NamemRNA_P-wetherbeei_contig19254.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: D8LRM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.450e-31
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  165 ALCLCWVAVDGVASGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            AL LCW+  + V +GW+D +VRC++A  G + W I  AHR AVT  A R ++ ASFLV+GA DG+V VWSLRTR++ ++F EH   V  VL D A   LVHSAG DC VLTYDL+
Sbjct:  105 ALFLCWLGDEAVVTGWSDCSVRCYDAATGALRWAIPKAHRAAVTCCAVRFDSSASFLVTGAEDGSVSVWSLRTRELLLRFSEHQKGVTTVLVDVASPNLVHSAGTDCTVLTYDLR 219          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A7S2FKB8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKB8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.190e-30
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  159 GGALCLCWVAVDGVASGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            GGA C+CW+    V SGW D  VRC +A   + +WEI  AHRGAVT VA   +A  S+++SG  DG+VR+W+LR+R++ +QF EH   V+ VL D     LVHSAG DC+V TYDL+
Sbjct:  200 GGARCMCWIGDTAVVSGWEDHFVRCHDASTMQALWEIPNAHRGAVTTVATHSDASLSYVLSGGEDGSVRIWALRSRELMLQFVEHKKGVSQVLVDVKSPNLVHSAGLDCSVFTYDLR 316          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A7S2BHX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHX7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.800e-30
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  159 GGALCLCWVAVDGVASGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            GGA C+CW+    V SGW D  VRC +A   + +WEI  AHRGAVT VA   +A  S+++SG  DG+VR+W+LR+R++ +QF EH   V+ VL D     LVHSAG DC+V TYDL+
Sbjct:  479 GGARCMCWIGDTAVVSGWEDHFVRCHDASTMQALWEIPNAHRGAVTTVATHSDASLSYVLSGGEDGSVRIWALRSRELMLQFVEHKKGVSQVLVDVKSPNLVHSAGLDCSVFTYDLR 595          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A7S2UWQ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.090e-27
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  159 GGALCLCWVAVDGVASGWADGAVRCFEAGG-GRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            G  LC+ WV    VA+GW D  VRC+     G M W I  AHR A+T++A   +    ++V+GA DGAVR+W+LR+R+M +QF EH   V+ V+ D  +  LVHSAG DCAVLTYD+Q
Sbjct:  417 GALLCMGWVGTTRVATGWEDCCVRCYNVEAQGAMEWHIPNAHRAAITSLAVHHDERLGYIVTGAKDGAVRLWNLRSREMLLQFTEHQKGVSKVIVDVRLPKLVHSAGLDCAVLTYDIQ 534          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A7S2SRF7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRF7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.220e-27
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  162 GALCLCWVAVDGVASGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            G  C+ WV    + +GW D  +RC +A   + +W +  AHRG VTAVA   +A  S+LVSG  DGAVRVWSLR+R++ +QF EH  PV  VL D     L+HS+  DC +LTYD++
Sbjct:  431 GDACIAWVGDSAIVTGWRDRFIRCHDAATMQQLWHLPNAHRGPVTAVATHSDASLSYLVSGGEDGAVRVWSLRSRELLLQFTEHKKPVTRVLVDVKSPHLIHSSSLDCQLLTYDVK 546          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A662YFZ8_9STRA (Cilia- and flagella-associated protein 52 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFZ8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.050e-18
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  204 SGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            SGWADG +R ++A   +  W IA AHRG VTAVA      A ++VSGA+DG V +WS  TR++ +QF EH   V  VL D      VHS G+D A+  YDL+
Sbjct:  381 SGWADGWLRAYDAATAQPKWHIATAHRGEVTAVAC----SAQYVVSGASDGGVSIWSFATRELVLQFHEHKRAVTGVLVDVCKPHFVHSCGQDKALFIYDLK 478          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A5D6XH67_9STRA (5'-nucleotidase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH67_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.240e-18
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  198 VASGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            V SGWADG +R ++A      W IA AHRG VT+VA+     A+++VSGA+DGAV VWS  TR++ +QF EH   V+ VL D      VHS G D A+  YDL+
Sbjct:  751 VLSGWADGWLRAYDAATAHCKWHIANAHRGHVTSVAS----SATYVVSGASDGAVSVWSALTRELVLQFHEHKRGVSQVLVDVGKPHWVHSCGLDKALFAYDLK 850          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A329RU02_9STRA (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RU02_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.360e-18
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  204 SGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            SGWADG +R ++A   +  W IA AHRG VTAVA      A ++VSGA+DG V +WS  TR++ +QF EH   V  VL D  +   VHS G D A+  YDL+
Sbjct:  470 SGWADGWLRAYDAATAQPKWHIATAHRGEVTAVAC----SAQYIVSGASDGGVSIWSFATRELVLQFHEHKRAVTGVLVDVKLPHRVHSCGVDKALFIYDLK 567          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A833W4Z2_PHYIN (Cilia- and flagella-associated protein 52 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W4Z2_PHYIN)

HSP 1 Score: 90.1 bits (222), Expect = 7.290e-18
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  204 SGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            SGW DG +R ++A   +  W IA AHRG VTAVA      A ++VSGA+DG V +WS  TR++ +QF EH   V+ VL D  +   VHS G D A+  YDL+
Sbjct:  469 SGWVDGWLRAYDAASAQPKWHIATAHRGEVTAVAC----SAQYIVSGASDGGVSIWSFATRELVLQFHEHKRAVSGVLVDVKLPHRVHSCGVDKALFIYDLK 566          
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Match: A0A7S3MYW1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3MYW1_9SPIT)

HSP 1 Score: 89.7 bits (221), Expect = 9.250e-18
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  162 GALCLCWVAVDGVASGWADGAVRCFEAGGGRMVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQFCEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ 509
            G+ C   +  D V +GW DG +RCF+     + WE+A AHRGAVTA+     A+A++++SG  +GAVRVW+   R++ +QF +    V ++ PD     L+HS   D  + TYDL+
Sbjct:  323 GSSCCISLDDDSVITGWRDGFIRCFDKQTHALQWEVANAHRGAVTAL----YADANYILSGGQEGAVRVWARTNRKLLIQFNDQKKDVVSLFPDLNQPHLIHSCSMDRTISTYDLK 434          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM7_ECTSI2.450e-3154.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FKB8_9STRA1.190e-3051.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BHX7_9STRA5.800e-3051.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UWQ1_9STRA5.090e-2749.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SRF7_9STRA5.220e-2747.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662YFZ8_9STRA2.050e-1848.04Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A5D6XH67_9STRA2.240e-1849.045'-nucleotidase n=1 Tax=Pythium brassicum TaxID=14... [more]
A0A329RU02_9STRA5.360e-1848.04Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A833W4Z2_PHYIN7.290e-1847.06Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A7S3MYW1_9SPIT9.250e-1839.66Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19254contigP-wetherbeei_contig19254:214..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRM7
PFAMsWD40
Model size512
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.23e-22
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
Cds size258
COG categoryB
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.036971-UTR-P-wetherbeei_contig19254:213..3601683186168.036971-UTR-P-wetherbeei_contig19254:213..360Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19254 214..360 +
1683186168.0481186-UTR-P-wetherbeei_contig19254:520..6271683186168.0481186-UTR-P-wetherbeei_contig19254:520..627Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19254 521..627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.0682187-CDS-P-wetherbeei_contig19254:627..6561683186168.0682187-CDS-P-wetherbeei_contig19254:627..656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19254 628..656 +
1683186168.079214-CDS-P-wetherbeei_contig19254:910..11391683186168.079214-CDS-P-wetherbeei_contig19254:910..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19254 911..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19254.1.1prot_P-wetherbeei_contig19254.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19254 628..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19254.1.1

>prot_P-wetherbeei_contig19254.1.1 ID=prot_P-wetherbeei_contig19254.1.1|Name=mRNA_P-wetherbeei_contig19254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MVWEIAGAHRGAVTAVAARGEAEASFLVSGAADGAVRVWSLRTRQMTMQF
CEHSGPVAAVLPDNAVAALVHSAGRDCAVLTYDLQ*
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mRNA from alignment at P-wetherbeei_contig19254:214..1139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19254.1.1 ID=mRNA_P-wetherbeei_contig19254.1.1|Name=mRNA_P-wetherbeei_contig19254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=926bp|location=Sequence derived from alignment at P-wetherbeei_contig19254:214..1139+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTTTCCTCGGCGCACACGGCGGCCATCACTGCCGTTGCCTGCTGCCC CGTTCGCGCCACTGATGTGGCAACCGCCGACGTCGACGGCAGCATCCGCT TCTGGGACCTTTCCAACTATGCCTGCATCGCCGTCGCCCGCCTGCCCGTC GCCCACCACCTGCACACAGCTGCCGGCGACGGAGCCGGCGCCGGTCCTGG CCACTGCCGCAGCGGCGCTGGGTGCATCGGCGGCGGCGGGACTAGTGGCA CTGGCAGTCGTGGCGGTGGTGGCGGCGGCGGCGGCGGCACGATCCGCGGC GGCGGAGGCGGCGGCCGGGGTGGCGCGTTGTGCCTGTGCTGGGTGGCGGT GGACGGCGTGGCCAGCGGCTGGGCGGACGGCGCGGTGCGGTGCTTCGAGG CGGGCGGCGGGCGGATGGTCTGGGAGATCGCTGGGGCTCACAGGTAAGAA TTTGTTCAGGAAAACGGGTTTCCAAAGGTCTTGCCCCTTCTTGCCGCTGT CCCACTCTGCATCCGGAATCGCAGCGGTTCAGCGAAGGGAGGAATTTGCT CCTGCAAGCACGTGCCTAACGTAACTTTCTCTAGAGCTGGTGTGACCGTC GCCGCCGCCGTTACCACAAATTCCAGGCTGGTAGCCTCTCCTCATGCTTC TCTTTACGGCCGTCGTTCTGTGACTGCCCTTCCAAATGCCTTTTCAGAGG CGCTGTGACGGCCGTGGCGGCCCGTGGCGAAGCCGAGGCGTCCTTCCTCG TGTCGGGCGCCGCCGACGGCGCGGTGCGCGTGTGGTCGCTGCGCACGCGG CAGATGACCATGCAGTTCTGCGAGCACAGCGGGCCGGTGGCGGCGGTGCT GCCAGACAATGCGGTGGCGGCGCTAGTGCACTCGGCTGGCCGCGACTGCG CCGTCCTCACGTACGATTTGCAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19254:214..1139+

>mRNA_P-wetherbeei_contig19254.1.1 ID=mRNA_P-wetherbeei_contig19254.1.1|Name=mRNA_P-wetherbeei_contig19254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig19254:214..1139+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTGGGAGATCGCTGGGGCTCACAGAGGCGCTGTGACGGCCGTGGC
GGCCCGTGGCGAAGCCGAGGCGTCCTTCCTCGTGTCGGGCGCCGCCGACG
GCGCGGTGCGCGTGTGGTCGCTGCGCACGCGGCAGATGACCATGCAGTTC
TGCGAGCACAGCGGGCCGGTGGCGGCGGTGCTGCCAGACAATGCGGTGGC
GGCGCTAGTGCACTCGGCTGGCCGCGACTGCGCCGTCCTCACGTACGATT
TGCAGTGA
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