mRNA_P-wetherbeei_contig19185.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19185.1.1
Unique NamemRNA_P-wetherbeei_contig19185.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A345ZWJ4_9HYPH (IclR family transcriptional regulator n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZWJ4_9HYPH)

HSP 1 Score: 384 bits (986), Expect = 1.000e-132
Identity = 206/255 (80.78%), Postives = 225/255 (88.24%), Query Frame = 1
Query:   10 MDRHTANDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESRMKSAA 774
            M R   NDKSQVQVIARAA ILRALEDEN+GLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDF+SLARP LERLSAEL ETVDLSTVKKDHLVFIDQV+GS RLRTVS VGETFPL+CTANGK+YLAQLSD+AV ALIG +YE RT +++T +D LL ELK +R  GVAFDREEHT GICAAGVAL DPLGN+VAISVPVP+ RF ++   IAE+LLATK  LE RM ++A
Sbjct:    5 MSRLVTNDKSQVQVIARAATILRALEDENAGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFVSLARPFLERLSAELHETVDLSTVKKDHLVFIDQVVGSQRLRTVSGVGETFPLHCTANGKAYLAQLSDSAVEALIGRSYEARTARSITKIDTLLNELKVVRRIGVAFDREEHTEGICAAGVALHDPLGNAVAISVPVPSLRFANQANHIAERLLATKRALEGRMNASA 259          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A140GW30_9HYPH (IclR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GW30_9HYPH)

HSP 1 Score: 349 bits (896), Expect = 4.040e-119
Identity = 183/249 (73.49%), Postives = 216/249 (86.75%), Query Frame = 1
Query:   28 NDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESRMKSAA 774
            +DK+QVQVIARAA ILRALE E++GLSLGQIA RV LARSTVQRIVA+LETEKL+IAA+PNGRVRLGP I+RLA+SV  DF++ ARP L RLS EL ETVDL+TV++DHL+FIDQVIGSHRLRTVSAVGETFPLYCTANGK+YL+ L +  V  LIG++YE RTP TLT L ALLAEL+T+R  G+A+DREEHTLGICA GVAL DPLGN+VAISVPVP+ RF+ +Q LIAE+LLATKH +++   +AA
Sbjct:    5 SDKNQVQVIARAAHILRALEGEDAGLSLGQIAARVGLARSTVQRIVASLETEKLLIAASPNGRVRLGPAILRLASSVTGDFVARARPHLMRLSEELCETVDLATVRRDHLMFIDQVIGSHRLRTVSAVGETFPLYCTANGKAYLSSLDELEVEQLIGKSYEARTPNTLTKLPALLAELRTVRKNGIAYDREEHTLGICAVGVALHDPLGNAVAISVPVPSQRFREQQRLIAERLLATKHAMQADWSAAA 253          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A1Q4DJG4_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DJG4_9HYPH)

HSP 1 Score: 346 bits (888), Expect = 8.500e-118
Identity = 186/249 (74.70%), Postives = 210/249 (84.34%), Query Frame = 1
Query:   28 NDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESRMKSAA 774
            ++ SQVQVIARAA ILRALEDE  GLSLGQIAQRV LARSTVQRIVAALE EKL+IAATPNGRVRLGP I+RLAASVRSDF+  ARP L RLS EL+ETVDL+TVKKDHL+FIDQV+GS RLRT +AVGETFPL+CTANGK+YLA+L++  V ALIG  Y  RTPKT+T LD LLAEL TIR  GVAFDREEHTLGI A GVA+ DPLGN VAISVPVPT RF +RQ  IAE+L+ATK  L +++ + A
Sbjct:   12 SENSQVQVIARAACILRALEDETHGLSLGQIAQRVGLARSTVQRIVAALEGEKLLIAATPNGRVRLGPAILRLAASVRSDFVHQARPFLTRLSQELQETVDLATVKKDHLIFIDQVVGSQRLRTEAAVGETFPLHCTANGKAYLAKLTNEQVEALIGRDYAERTPKTITRLDPLLAELATIRKIGVAFDREEHTLGISAVGVAMHDPLGNPVAISVPVPTPRFVNRQTQIAERLMATKRALLAQLNAKA 260          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A6L5FI52_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FI52_9HYPH)

HSP 1 Score: 345 bits (885), Expect = 2.190e-117
Identity = 184/248 (74.19%), Postives = 209/248 (84.27%), Query Frame = 1
Query:   28 NDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESRMKSA 771
            +DKSQVQVIARAAAILRALED+ SGLSLGQIAQRV+LARSTVQRIVAALE EKLVIAA+PNGRVRLGPTI+RLAASVR+DF+SLA P L +LS EL ETVDL+ VK+DHLVF+DQVIG  RLRTVSAVG++FPLYCTANGK+YLAQL    +  LIG TYE RTPKTLT LD LL +L  +R +GVA+DREEHTLGICAAGVAL+D LGN VA+SVPVP  RF+  Q  IA +LLATK  L   + +A
Sbjct:   10 SDKSQVQVIARAAAILRALEDQASGLSLGQIAQRVDLARSTVQRIVAALEAEKLVIAASPNGRVRLGPTILRLAASVRTDFVSLAHPFLVKLSHELRETVDLAVVKRDHLVFVDQVIGPQRLRTVSAVGDSFPLYCTANGKAYLAQLERPVIEQLIGRTYEKRTPKTLTRLDDLLKDLDAVRKSGVAYDREEHTLGICAAGVALRDALGNYVAVSVPVPAQRFKENQEPIAGRLLATKRALADDLSAA 257          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A327KVD0_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KVD0_9HYPH)

HSP 1 Score: 341 bits (875), Expect = 7.520e-116
Identity = 177/248 (71.37%), Postives = 214/248 (86.29%), Query Frame = 1
Query:   31 DKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESRMKSAA 774
            ++  VQVI RAAAILRALED+ +GLSLGQIAQRV+LARSTVQRIVAALE EKL+IAA+PNGRVRLGPT++RLAASV+SDF+SL RP L RLS EL ETVDL+ V++D +VFIDQV+GS RLRTVSAVGETFPLYCTANGK+YLAQL + A+  LIG +Y  RTP TLT+LD+L+ +L+ +R +GVAFDREEHT+G+CAAGV L+D LGN VAISVPVP  RF   +A IAE+LLATKH +ES++++AA
Sbjct:   11 ERGPVQVITRAAAILRALEDQPAGLSLGQIAQRVDLARSTVQRIVAALEAEKLLIAASPNGRVRLGPTLLRLAASVQSDFVSLCRPYLLRLSNELRETVDLAAVRRDGMVFIDQVVGSQRLRTVSAVGETFPLYCTANGKAYLAQLGNDAIEQLIGRSYPARTPHTLTSLDSLVQDLRRVRRSGVAFDREEHTVGVCAAGVVLRDTLGNYVAISVPVPAQRFVDHEAAIAERLLATKHAVESQLEAAA 258          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A327KZS6_9HYPH (Uncharacterized protein n=2 Tax=Rhodoplanes TaxID=29407 RepID=A0A327KZS6_9HYPH)

HSP 1 Score: 336 bits (862), Expect = 7.130e-114
Identity = 176/258 (68.22%), Postives = 213/258 (82.56%), Query Frame = 1
Query:    1 LRKMDRHTANDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESRMKSAA 774
            +++ D     ++  VQVI RAA+ILRALED+ +GLSLGQIAQRV+LARSTVQRIVAALE EKL+IAA+P GRVRLGPT++RLA+SV+SDF+SL RP L +LSAEL ETVDL+ +K+D+L+F+DQVIGS RLR VS+VGETFPLYCTANGK+YLAQL + AV  L+G +Y  RTP TLTT DALL +L+ IR  GVAFDREEHT+G+CAAGV L+D LGN +AISVPVP  RF  RQ  IAE LLATK  LE +++SAA
Sbjct:    1 MKRADAPDQAERGPVQVITRAASILRALEDQPAGLSLGQIAQRVDLARSTVQRIVAALEAEKLLIAASPTGRVRLGPTLLRLASSVQSDFVSLCRPWLVKLSAELSETVDLAAIKRDYLIFLDQVIGSQRLRAVSSVGETFPLYCTANGKAYLAQLGNDAVEELVGRSYPARTPTTLTTYDALLQDLRRIRRTGVAFDREEHTVGVCAAGVVLRDSLGNYLAISVPVPAQRFYDRQTEIAEHLLATKRALEDQLESAA 258          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A1W6ZT89_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZT89_9HYPH)

HSP 1 Score: 324 bits (831), Expect = 4.370e-109
Identity = 173/249 (69.48%), Postives = 201/249 (80.72%), Query Frame = 1
Query:   13 DRHTANDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESR 759
            D+    +KSQVQVIARAAAI+RALED  +GLSLG+IA +V LARSTVQRIVAALETEKLV+AA+P GRVRLGPTI+RLA SVR+DF ++A+P L  LS EL ETVDL+++K DHLVFIDQVIGS RLRTVSAVGE FPLYCTANGK+YLAQL D  +  LIG+ Y+ RTP TLT L  LL +++  R  G A DREEH LGICAAGVA++D LGN VAISVPVPT RF+S +A I  +LLATK  LE R
Sbjct:   10 DQTATIEKSQVQVIARAAAIMRALEDTTTGLSLGEIALKVGLARSTVQRIVAALETEKLVVAASPAGRVRLGPTILRLAGSVRTDFATIAKPFLVELSKELHETVDLASIKGDHLVFIDQVIGSQRLRTVSAVGEAFPLYCTANGKAYLAQLDDAQIETLIGKIYKARTPSTLTKLSQLLDDIRAARRDGYAIDREEHALGICAAGVAMRDMLGNYVAISVPVPTQRFESERANICARLLATKRVLEDR 258          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A6N7H121_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H121_9HYPH)

HSP 1 Score: 323 bits (827), Expect = 1.350e-108
Identity = 173/247 (70.04%), Postives = 198/247 (80.16%), Query Frame = 1
Query:   10 MDRHTANDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHEL 750
            MD    N K+Q+QVIARAAAILRALE++ +GLSL QIAQ V LARSTVQRIVAALE EKLVIAA+P GRVRLGPTI RLA SV +DF+S ARP L +LS EL ETVDL+T+  DHLVF+DQV G  RLR VSAVGE FPL+CTANGK+YLA+LSD  VA LIG+TYE RTPKTLT L  LL +LK +R +GVA DREEHTLGICAAG+ + D +GN VAISVPVP  RF ++QA IA+ LL TK  L
Sbjct:    1 MDVRLPNGKNQIQVIARAAAILRALENQAAGLSLAQIAQHVGLARSTVQRIVAALEAEKLVIAASPTGRVRLGPTIQRLATSVGADFVSAARPFLVKLSQELNETVDLATIHNDHLVFVDQVTGPQRLRAVSAVGEAFPLHCTANGKAYLAELSDEEVARLIGKTYEQRTPKTLTRLKDLLKDLKMVRKSGVALDREEHTLGICAAGIVMTDFVGNHVAISVPVPAQRFATQQARIAKSLLTTKRAL 247          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: UPI0010BE2E1C (IclR family transcriptional regulator n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BE2E1C)

HSP 1 Score: 310 bits (793), Expect = 1.980e-103
Identity = 159/234 (67.95%), Postives = 197/234 (84.19%), Query Frame = 1
Query:   31 DKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLL 732
            DKS VQVIARA +ILR+LED+ SGLSLG+IA RV+LARSTVQRIVAAL  EK++IAA+PNGRVRLGPTI+RLA+SV +DF ++AR  ++ LS +L ETVD++T+K DHLVF+DQV+G HRL+ VSAVGE FPL+CTANGK+YLAQL D+ V  L+G T+E RT  ++T L  LL ELKTIR +GVAFDREEHT+GICA GVAL+DP+GN +AISVPVP  RF+ R+  +AE+LL
Sbjct:   12 DKSPVQVIARAISILRSLEDQPSGLSLGEIAARVHLARSTVQRIVAALAAEKVLIAASPNGRVRLGPTILRLASSVPNDFATMARSYVQALSKKLGETVDIATIKGDHLVFVDQVVGPHRLKAVSAVGEAFPLHCTANGKAYLAQLDDSEVEKLLGRTFEKRTSNSITDLPTLLKELKTIRKSGVAFDREEHTVGICAVGVALRDPVGNPIAISVPVPEPRFRGREHFLAEQLL 245          
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Match: A0A502FSH9_9PROT (IclR family transcriptional regulator n=4 Tax=Roseomonas TaxID=125216 RepID=A0A502FSH9_9PROT)

HSP 1 Score: 303 bits (775), Expect = 1.730e-100
Identity = 157/243 (64.61%), Postives = 193/243 (79.42%), Query Frame = 1
Query:   31 DKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQRIVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSAELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYLAQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHTLGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESR 759
            +K+Q+QVI RAAA+LR+LE++  GLSLGQIA +V LARSTVQRIVAALE+EKLV+AATP GRVRLGP ++RLAASV ++  +LA P +  LSA L ETVD + V++DHL+F+DQV+G  RL+ VSAVGETFPLYCTANGK+YLA LSD  + ALIG +Y  RTP TLTT + LL E++  R AG A DREEH LGI A GVAL+D +GN VA+SVPVPT RF+ R+  IAE+LL TK  L +R
Sbjct:   22 EKNQIQVIGRAAAVLRSLENQPHGLSLGQIAAKVELARSTVQRIVAALESEKLVVAATPGGRVRLGPALLRLAASVETNVAALAHPFIAELSASLGETVDFAAVRRDHLIFVDQVVGMQRLQAVSAVGETFPLYCTANGKAYLATLSDDEIVALIGRSYARRTPNTLTTAEPLLEEIRAARQAGFAVDREEHVLGISAVGVALRDMMGNPVAVSVPVPTQRFRGREEDIAERLLETKRALGAR 264          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A345ZWJ4_9HYPH1.000e-13280.78IclR family transcriptional regulator n=2 Tax=Pseu... [more]
A0A140GW30_9HYPH4.040e-11973.49IclR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A1Q4DJG4_9HYPH8.500e-11874.70Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A6L5FI52_9HYPH2.190e-11774.19Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A327KVD0_9HYPH7.520e-11671.37Uncharacterized protein n=1 Tax=Rhodoplanes elegan... [more]
A0A327KZS6_9HYPH7.130e-11468.22Uncharacterized protein n=2 Tax=Rhodoplanes TaxID=... [more]
A0A1W6ZT89_9HYPH4.370e-10969.48Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]
A0A6N7H121_9HYPH1.350e-10870.04Helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0010BE2E1C1.980e-10367.95IclR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A502FSH9_9PROT1.730e-10064.61IclR family transcriptional regulator n=4 Tax=Rose... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19185contigP-wetherbeei_contig19185:345..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123060.JONP01000011_gene3082
PFAMsHTH_IclR,IclR
Model size780
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-102
EggNOG OGsCOG1414@1|root,COG1414@2|Bacteria,1R4S7@1224|Proteobacteria,2URNG@28211|Alphaproteobacteria
Descriptiontranscriptional regulator
Cds size771
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.714249-UTR-P-wetherbeei_contig19185:344..3531683186165.714249-UTR-P-wetherbeei_contig19185:344..353Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19185 345..353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.7261078-CDS-P-wetherbeei_contig19185:353..11241683186165.7261078-CDS-P-wetherbeei_contig19185:353..1124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19185 354..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19185.1.1prot_P-wetherbeei_contig19185.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19185 354..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19185.1.1

>prot_P-wetherbeei_contig19185.1.1 ID=prot_P-wetherbeei_contig19185.1.1|Name=mRNA_P-wetherbeei_contig19185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MDRHTANDKSQVQVIARAAAILRALEDENSGLSLGQIAQRVNLARSTVQR
IVAALETEKLVIAATPNGRVRLGPTIMRLAASVRSDFISLARPMLERLSA
ELEETVDLSTVKKDHLVFIDQVIGSHRLRTVSAVGETFPLYCTANGKSYL
AQLSDTAVAALIGETYEPRTPKTLTTLDALLAELKTIRAAGVAFDREEHT
LGICAAGVALQDPLGNSVAISVPVPTHRFQSRQALIAEKLLATKHELESR
MKSAAG*
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mRNA from alignment at P-wetherbeei_contig19185:345..1124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19185.1.1 ID=mRNA_P-wetherbeei_contig19185.1.1|Name=mRNA_P-wetherbeei_contig19185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig19185:345..1124+ (Phaeothamnion wetherbeei SAG_119_79)
TTGCGTAAAATGGATCGCCACACCGCCAACGATAAAAGCCAGGTGCAGGT GATCGCGCGCGCCGCCGCCATCTTGCGGGCGCTGGAGGACGAAAATTCCG GATTGAGCCTCGGCCAGATCGCGCAGCGGGTGAACCTCGCGCGCTCGACG GTGCAGCGCATCGTCGCCGCGCTGGAAACCGAAAAGCTGGTGATCGCGGC GACGCCGAACGGCCGCGTCCGCCTCGGCCCGACCATCATGCGGCTCGCCG CGTCGGTGCGCAGCGACTTCATCTCATTGGCGCGTCCGATGCTCGAGCGG CTGTCGGCCGAGCTGGAAGAGACGGTCGATCTGTCGACCGTCAAGAAGGA CCATCTTGTCTTCATCGACCAGGTGATCGGCTCGCATCGCCTGCGCACCG TCTCCGCCGTCGGCGAGACCTTCCCGCTCTATTGCACCGCCAACGGCAAG TCCTATCTGGCGCAGCTCAGCGACACCGCGGTGGCAGCCTTGATCGGCGA GACCTATGAGCCGCGGACGCCGAAGACCTTGACCACACTCGACGCGCTGC TTGCGGAATTGAAGACCATTCGCGCGGCCGGCGTCGCCTTTGACCGCGAA GAGCACACGCTCGGCATCTGCGCCGCGGGCGTCGCCTTGCAGGATCCGCT CGGCAATTCGGTCGCCATCTCGGTGCCGGTGCCGACGCATCGCTTCCAGA GCCGGCAGGCCCTGATTGCAGAGAAACTTCTGGCCACCAAGCATGAGCTG GAAAGCCGGATGAAATCCGCCGCCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19185:345..1124+

>mRNA_P-wetherbeei_contig19185.1.1 ID=mRNA_P-wetherbeei_contig19185.1.1|Name=mRNA_P-wetherbeei_contig19185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig19185:345..1124+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCGCCACACCGCCAACGATAAAAGCCAGGTGCAGGTGATCGCGCG
CGCCGCCGCCATCTTGCGGGCGCTGGAGGACGAAAATTCCGGATTGAGCC
TCGGCCAGATCGCGCAGCGGGTGAACCTCGCGCGCTCGACGGTGCAGCGC
ATCGTCGCCGCGCTGGAAACCGAAAAGCTGGTGATCGCGGCGACGCCGAA
CGGCCGCGTCCGCCTCGGCCCGACCATCATGCGGCTCGCCGCGTCGGTGC
GCAGCGACTTCATCTCATTGGCGCGTCCGATGCTCGAGCGGCTGTCGGCC
GAGCTGGAAGAGACGGTCGATCTGTCGACCGTCAAGAAGGACCATCTTGT
CTTCATCGACCAGGTGATCGGCTCGCATCGCCTGCGCACCGTCTCCGCCG
TCGGCGAGACCTTCCCGCTCTATTGCACCGCCAACGGCAAGTCCTATCTG
GCGCAGCTCAGCGACACCGCGGTGGCAGCCTTGATCGGCGAGACCTATGA
GCCGCGGACGCCGAAGACCTTGACCACACTCGACGCGCTGCTTGCGGAAT
TGAAGACCATTCGCGCGGCCGGCGTCGCCTTTGACCGCGAAGAGCACACG
CTCGGCATCTGCGCCGCGGGCGTCGCCTTGCAGGATCCGCTCGGCAATTC
GGTCGCCATCTCGGTGCCGGTGCCGACGCATCGCTTCCAGAGCCGGCAGG
CCCTGATTGCAGAGAAACTTCTGGCCACCAAGCATGAGCTGGAAAGCCGG
ATGAAATCCGCCGCCGGCTGA
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