mRNA_P-wetherbeei_contig1886.4.6 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: D8LEZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ9_ECTSI) HSP 1 Score: 226 bits (577), Expect = 1.860e-66 Identity = 144/276 (52.17%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTY---------GVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGA-------AESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQG-LDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDF 777
QV+ELLSAFGPLKSFHLVRD GSPTSKGY FCEY++ +T +AC+GL+GM LGDKTLTVR A S+G G+ +GG G MG A PT +EQ QLA AMAAL P A MA+ GGA AESA+AA+ + + PTR+LV+L+MVT EL EYEDIVDDIQ ECS+HGT+L+++VPRPG+ VGKVF+EY ++ A++AALSLAGRQF IVKVEY +E KF+ R+F
Sbjct: 376 QVRELLSAFGPLKSFHLVRDPGSPTSKGYGFCEYLNAGVTAIACEGLHGMTLGDKTLTVRPATDRGSSGXXXXXXXXXXXXXXXXXXXMPGMQMGG-GQQMGLTA----PPTQQEQMQLAQAMAALD-----------PNASQAAMASLAQGGAGAVPSAAAESAVAANLIRAIPPTRVLVMLNMVTEAELRDPQEYEDIVDDIQQECSSHGTVLSIIVPRPGEADASRAVGKVFVEYDTKDSAQKAALSLAGRQFGANIVKVEYLNEEKFARREF 635
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A835ZGN1_9STRA (Splicing factor U2AF subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN1_9STRA) HSP 1 Score: 183 bits (465), Expect = 3.320e-52 Identity = 112/258 (43.41%), Postives = 150/258 (58.14%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRD 774
QVKELLSAFG LK+ HLV+D+G+ SKGYAFCEY DP +T +AC+GLNGM LGDKTLTVR + GH +V LA AMAAL A V ESA AA+ +T+ PTR+LVL++MV E+L D EY DI++D+++EC +G + +++PRPG+ VGKVF+EY + + A+ AA++LAGRQFA +IVK +Y DE++F+ RD
Sbjct: 190 QVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVR-----------------------------------GHALSVAAL-MLAQAMAALDPTAHKAV--------------------TESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARD 388
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A8K1C271_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C271_PYTOL) HSP 1 Score: 178 bits (452), Expect = 8.010e-49 Identity = 115/260 (44.23%), Postives = 147/260 (56.54%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDFT 780
QVKELL AFGPLKSFHLV++ + SKGY FCEY+DP++T AC GLN M+LGDKTLTVR A ++A A A G V G+ G PT AAL + AG G+ +P +APL P+R++VLL+MVT +EL D EY DI+DDI+ EC G +L+LV+PRP G VGKVF+E+ D A+ A+ L GR FA R V VE+ DE K++ RDF+
Sbjct: 347 QVKELLQAFGPLKSFHLVKELNTNMSKGYGFCEYLDPNVTDAACIGLNDMKLGDKTLTVRRAMSQENAKAVAS----------AAGSVNSGLS----MGLDPTT----------AALQTISMAGFGLGIP-------SAPLG----------------NPSRVIVLLNMVTADELEDDEEYNDILDDIKTECERFGPVLSLVIPRPRDGYHTAVGKVFVEFADIASAQGASQELHGRGFANRTVSVEFMDEQKYARRDFS 559
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A5D6XX73_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX73_9STRA) HSP 1 Score: 174 bits (440), Expect = 9.710e-47 Identity = 114/259 (44.02%), Postives = 144/259 (55.60%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDF 777
Q+KELL AFGPL+SFHLV++ S SKGY FCEY+DP+ T AC GLN M+LGDKTLTVR A P+ T AA GGG GS P + AA+ AL MA + AP A P+R++VLL+MVT EEL + EY DIVDDI++EC G ++++V+PRP G + VGKVF+EY A+ AA L GR F+ RIV VEY DE K++ R+F
Sbjct: 406 QIKELLQAFGPLRSFHLVKELSSNMSKGYGFCEYLDPNSTDAACLGLNEMKLGDKTLTVRRAMTPE------YTSKAA----------GGG-----GSSSHPNPGMELASQAALQALS---------------MAGLGAPSGPSGA-------------PSRVVVLLNMVTPEELDDEDEYADIVDDIKSECERFGRVISIVLPRPRDGFYSAVGKVFVEYDAVPSAQAAAAELHGRGFSNRIVAVEYMDEHKYARREF 615
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: K3WB93_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB93_GLOUD) HSP 1 Score: 169 bits (429), Expect = 2.990e-45 Identity = 116/260 (44.62%), Postives = 143/260 (55.00%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDFT 780
QVKELL AFGPLKSFHLV++ S SKGY FCEY+D ++T AC GLN M+LGDKTLTVR A ++A A A G V G+ + L + AAL AG G IP M PL PTR++VLL+MVT EEL + EY DIVDDI+ EC G + ++V+PRP G + VGKVF+EY D A+ AA L GR F+ R V VEY DE K++ RDF+
Sbjct: 391 QVKELLQAFGPLKSFHLVKELNSNLSKGYGFCEYVDINVTDSACLGLNDMKLGDKTLTVRRAMSQENAKAVAS----------AAGTVNSGL--------------EMGLNPSHAALQAMNLAGFG----IPSM-----PLG----------------TPTRVIVLLNMVTPEELEDEEEYADIVDDIKGECERFGRVNSIVLPRPRDGFYSAVGKVFVEYGDVPSAQAAAAELHGRGFSNRTVAVEYMDEHKYARRDFS 601
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A1W0ABZ7_9STRA (Splicing factor U2AF subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABZ7_9STRA) HSP 1 Score: 166 bits (420), Expect = 2.870e-44 Identity = 110/261 (42.15%), Postives = 139/261 (53.26%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPG--QGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDF 777
QVKELL AFGPLKSFHLV++ + SKGY FCEY+DPD+TQ AC GLN MQ+GDKTLTVR A +AG DM + G T Q A + L +P + P+ L A P+RI+VLL+MVT E+L D EY DI DDI+ EC G I +++VPRPG Q + VGK+F+E+ + HA+ A+ L GR FA R V VE+ E KF R+F
Sbjct: 322 QVKELLQAFGPLKSFHLVKELNTNLSKGYGFCEYMDPDITQTACAGLNDMQIGDKTLTVRTAL---TAGGLYPPDMH-----------------LMGPNQPVTTTTMMQAATSSNPL-------------LPNVDPILQQLQKHQAMPLQIVPSVPLGAPSRIIVLLNMVTPEDLVDDEEYNDICDDIRAECEKSGPIKSMIVPRPGERQYQSSSVGKIFVEFAEIAHAQHASNELHGRGFANRTVAVEFMAEDKFLRREF 549
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A067C227_SAPPC (Splicing factor U2AF subunit n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C227_SAPPC) HSP 1 Score: 160 bits (404), Expect = 2.530e-43 Identity = 108/270 (40.00%), Postives = 142/270 (52.59%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLE---------PTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPG--QGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDF 777
QVKELL AFG LKSFHLV++ + SKGY FCEY+DP++TQVAC GLN MQ+GDKTLTVR A + GL+ H P + LG P M+ P+ L + +A L+ P+RI+VLL+MVT ++L + EY+DI DDI+ EC G I ++VVPRPG Q A VGK+F+E+ + HA+ A+ L GR FA R V VE+ E KF+ R+F
Sbjct: 144 QVKELLQAFGALKSFHLVKELNTNLSKGYGFCEYMDPEVTQVACAGLNDMQIGDKTLTVRTALT--AGGLYPPDHP-----------------------HAPPQQ-----------LGNPGVTTTTMMQAATSSNPLL--LNVDPILQQLQKHQAMPLQIVPSVPLGAPSRIIVLLNMVTPDDLTDNDEYQDICDDIRAECEKSGPIRSMVVPRPGETQYQTASVGKIFVEFGEVVHAQHASNELHGRGFANRTVAVEFMSETKFARREF 375
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A6A3P0N3_9STRA (Splicing factor U2AF subunit n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P0N3_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.810e-42 Identity = 106/258 (41.09%), Postives = 142/258 (55.04%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRD 774
QVKELL AFGPL+SFHLV++ S SKGY FCEY+D ++T AC GLN M+LGDKTLTVR A ++A A +G V T E L + AAL + AG+ L P+ A P+R++VLL+MVT EEL + EY DI+DDI+ EC G + +L++PRP G+ + VGKVF+E+ D + A+ AA L GR F+ R V VE+ DE K++ R+
Sbjct: 380 QVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACLGLNDMRLGDKTLTVRRAMSQENAKAVASA-----------------------AGTVNTGLEMG-LDPSRAALQAMSLAGIPSL-------PLGA--------------------PSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVPSLLLPRPRDGIPSAVGKVFVEFGDVQSAQNAATELHGRGFSNRTVIVEFMDEGKYARRE 586
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: D0MXQ4_PHYIT (Splicing factor U2AF subunit n=3 Tax=Phytophthora TaxID=4783 RepID=D0MXQ4_PHYIT) HSP 1 Score: 161 bits (408), Expect = 1.990e-42 Identity = 103/260 (39.62%), Postives = 140/260 (53.85%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPIPGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDFT 780
QVKELL AFGPL+SFHLV++ S SKGY FCEY+D ++T AC GLN MQLGDKTLTVR A ++A A+A+ G G+ M + P +A M A G + P+R++VLL+MVT EEL + EY DI+DDI+ EC G + +L++PRP G+ + VGKVF+E+ D + A+ AA L GR F+ R V VE+ DE K++ R+ +
Sbjct: 361 QVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACIGLNDMQLGDKTLTVRRAMSQENA-------------------------------------------KAVASAAGTVNTGLEMGLD-PSLAAMQAMSMAGIPSVPLGT-------PSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVPSLLLPRPRDGVLSAVGKVFVEFADVQSAQAAATELHGRGFSNRTVAVEFMDEGKYARREIS 569
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Match: A0A484DRL9_BRELC (Splicing factor U2AF subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRL9_BRELC) HSP 1 Score: 160 bits (405), Expect = 4.380e-42 Identity = 107/261 (41.00%), Postives = 141/261 (54.02%), Query Frame = 1
Query: 1 QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMQLGDKTLTVRVAQVPDSAGLFAVTDMAAQTYGVAVGGVGGGMGGIAGSGHVPTVEEQAQLAAAMAALGGPAAAGVGMLMPI-PGMAPMAAPLTGGAAESAMAASRAQTLEPTRILVLLDMVTGEELAIDSEYEDIVDDIQNECSTHGTILALVVPRPGQGLDAVVGKVFIEYRDREHARQAALSLAGRQFAERIVKVEYGDEAKFSNRDFT 780
QVKELL AFGPL+SFHLV++ S SKGY FCEY+D +T AC GLN M+LGDKTLTVR A ++A AV + A G+V T G+ M + P A M A G + PTR++VLL+MVT +EL D EY DIVDDI+ EC G +++L++PRP G+ + VGKVFIE++D A+ AA L GR F+ RIV VE+ E ++ R+ +
Sbjct: 346 QVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYLDVSVTDAACMGLNDMRLGDKTLTVRRAMSQENA--KAVANAA---------------------GNVNT----------------------GLEMGLDPSQAAMQAMTLAGITGVPLGV-------PTRVIVLLNMVTRDELEDDDEYADIVDDIKGECERFGRVVSLLLPRPRDGILSAVGKVFIEFQDVASAQGAATELHGRGFSNRIVSVEFMPEELYARREIS 554 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1886.4.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1886.4.6 >prot_P-wetherbeei_contig1886.4.6 ID=prot_P-wetherbeei_contig1886.4.6|Name=mRNA_P-wetherbeei_contig1886.4.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=261bp QVKELLSAFGPLKSFHLVRDSGSPTSKGYAFCEYIDPDMTQVACDGLNGMback to top mRNA from alignment at P-wetherbeei_contig1886:5029..6376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1886.4.6 ID=mRNA_P-wetherbeei_contig1886.4.6|Name=mRNA_P-wetherbeei_contig1886.4.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1348bp|location=Sequence derived from alignment at P-wetherbeei_contig1886:5029..6376- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1886:5029..6376- >mRNA_P-wetherbeei_contig1886.4.6 ID=mRNA_P-wetherbeei_contig1886.4.6|Name=mRNA_P-wetherbeei_contig1886.4.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig1886:5029..6376- (Phaeothamnion wetherbeei SAG_119_79)back to top |