mRNA_P-wetherbeei_contig1836.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1836.3.2
Unique NamemRNA_P-wetherbeei_contig1836.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A6H5JSZ6_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ6_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.290e-91
Identity = 150/259 (57.92%), Postives = 184/259 (71.04%), Query Frame = 3
Query:  177 TRATNG----ASSSPRMSMA---APVDVSGDGGVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLVFTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRK--QEAAAAAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNRSPGGVADDIEVASTVAAVL 926
            TR T G    A  +P MS A   +P+D+SGDGGVTR + ++G+GK +  GDIA ++++G + +TGLVF++ DEY  TL DGTMISGWD GL GL  GD A I+C+ RYGYG EGV P+VPP A L FDV++LENEGNIMNP TF D NPLTPRTPD+I   F  K  ++A AAA   E EG  KV+ W K+IY+FGLFEG+TGEEAPWYL+PLITFPIM  I G AF  V  L G++T+R  G V DD  +AS  A  L
Sbjct:   51 TRRTRGWGSRAQQAPAMSTAVATSPIDLSGDGGVTREMIKEGSGKGLATGDIATVRFTGTVAETGLVFSKGDEYLTTLEDGTMISGWDTGLAGLRKGDRALIKCTSRYGYGAEGVTPIVPPNANLVFDVELLENEGNIMNPATFVDANPLTPRTPDTIAEAFDSKSRRKALAAADVDELEGLDKVIAWAKNIYIFGLFEGETGEEAPWYLKPLITFPIMITICGVAFYAVLLLGGVTTDRGTG-VQDDPMLASLGAYAL 308          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: D8LT45_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT45_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.850e-74
Identity = 120/193 (62.18%), Postives = 139/193 (72.02%), Query Frame = 3
Query:  354 VFTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRK--QEAAAAAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNRSPGGVADDIEVASTVAAVL 926
            VF++ DEY  TL DGTMISGWD GL GL  GD A I+C+ RYGYG EGV P+VPP A L FDV++LENEGNIMNP TF D NPLTPRTPD+I   F  K  ++A AAA   E EG  KV+ W K+IY+FGLFEG+TGEEAPWYL+PLITFPIM  I G AF  V  L G++T+R  G V DD  +AS  A  L
Sbjct:    5 VFSKGDEYLTTLEDGTMISGWDTGLAGLRKGDRALIKCTSRYGYGAEGVTPIVPPNANLVFDVELLENEGNIMNPATFVDANPLTPRTPDTIAEAFDSKSRRKALAAADVDELEGLDKVIAWAKNIYIFGLFEGETGEEAPWYLKPLITFPIMITICGVAFYAVLLLGGVTTDRGTG-VQDDPMLASLGAYAL 196          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S2UWP8_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.520e-59
Identity = 104/234 (44.44%), Postives = 146/234 (62.39%), Query Frame = 3
Query:  219 MAAPVDVSGDGGVTRVVRRKGTGKP-VGPGDIAVLKYSGKIIDTGLVFTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEF--LRKQEAAAAAMGPEAEGFAKVLQWFKSIYVFGLF-EGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNRSPGGVADDIEVAS 908
            +A  V ++ DGGV + +  KG  +  +  G IAV+KY   + D G  F   +EYR T+ DGTMI GWD  L  + +G++A I  +P Y YG+EGV PV+ P + ++ +++VL  EGNI+NP TFAD NPLTPRTP +I   F    +++A   A     EGFAK  +W++S+Y FGLF EGQTGE+ P  L P ITFP +F + G AF +V+   G+ T R+   V DD  ++S
Sbjct:   57 VAEEVQLTDDGGVVKTILEKGDEETSLERGSIAVVKYQAAVRD-GKTFAAGEEYRTTVRDGTMIQGWDIALESMKIGEKAKISLAPEYAYGEEGVAPVIEPNSPVDIELEVLAYEGNILNPATFADNNPLTPRTPQAITAAFESTARRQAREEAELEGLEGFAKFEKWYRSLYFFGLFGEGQTGEKPPILLNPFITFPAIFLVVGVAFYIVFVSGGVITERAAESVLDDASLSS 289          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S4EZK8_CHRCT (Peptidylprolyl isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZK8_CHRCT)

HSP 1 Score: 176 bits (445), Expect = 2.080e-49
Identity = 89/213 (41.78%), Postives = 127/213 (59.62%), Query Frame = 3
Query:  231 VDVSGDGGVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLVFT----RSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAAAAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGI 857
            VD+ GDGGV + V+ +G+G     G    + Y GK++ +   F     R   +  TL +G +I GW+ GL  + VG++AT+ C+P+Y YG +G+PPV+PP +TLEF+V++L       + +TFA+ NP +PRTP  I   +    E   A   P+ EG   +L W KSIY+FG F  + GE  PWYL PLITFP +F I G  F +V AL G+
Sbjct:   78 VDLVGDGGVLKTVKVEGSGSVPQRGATVEVHYEGKLLGSETQFDSSRKRGKPFSFTLGEGKVIGGWEVGLSSMRVGEKATLVCAPQYAYGAKGMPPVIPPSSTLEFEVELLGVSEAQADASTFAEDNPFSPRTPGDIAQAY----EKRLADKAPKREGLEGLLDWAKSIYIFGFFTDEKGELPPWYLNPLITFPSIFVIVGIGFWLVVALGGL 286          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S2I8Q8_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8Q8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 6.600e-49
Identity = 97/238 (40.76%), Postives = 141/238 (59.24%), Query Frame = 3
Query:  252 GVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLV-FTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSP--RYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAA--AAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNRSPGGVADDIEVASTVAAVLAAALGDAF 950
            G+T+   ++G G P+  G +A +KYS  +  T    F++SD+ R  + DG MI GW+  L  +NVG+ ATIR S   ++GYG+ GVPP+VPP A +E D+++L  E  +     FA+  PLTPRTP +IR  +  ++EA    A   P AEG    ++ F S Y FG FEG+TG++APW+LRP ITFP+ FA+ GAAF +      IS   +   V D+++    +   +  AL  AF
Sbjct:   52 GLTKKTTKEGNGPPLERGQVASVKYSCYLPGTETKPFSKSDKQRMIVGDGQMIEGWELALLSMNVGERATIRISDPNKFGYGEAGVPPIVPPNAPIEMDMEILGAEERL-EMGAFANNEPLTPRTPKAIRAAYEARKEAKIQDAIENPPAEGLQAWIEKFNSFYFFGFFEGETGQQAPWFLRPSITFPLAFAVVGAAFYISLKFGAISERGAQ--VTDELDELIVLGGAMRDALMMAF 286          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S0LHF9_9EUKA (Peptidylprolyl isomerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHF9_9EUKA)

HSP 1 Score: 173 bits (439), Expect = 7.120e-49
Identity = 88/213 (41.31%), Postives = 123/213 (57.75%), Query Frame = 3
Query:  231 VDVSGDGGVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLVF----TRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAAAAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGI 857
            VD+ GDGGV +V+  +G G     G    + Y G+++ +G  F     R   +  TL +G +I GW+ GL  +  G++AT+ CSP+Y YG +G+PP +PP ATLEFDV+++  +       +FAD NPL+PRTP  I   + RK     A+      G    L W KSIY+FG F  + GE  PWYL PLITFP +F + G  F +V AL G+
Sbjct:   47 VDLVGDGGVLKVLEVEGAGAVPRRGATVEVHYEGRLVASGERFDSSRVRGKAFSFTLGEGKVIGGWEVGLSSMKAGEKATLVCSPQYAYGPKGIPPTIPPDATLEFDVELISIKMPQSESTSFADDNPLSPRTPKDIAQAYERK----LASKEDSRTGIDGFLDWAKSIYIFGFFADEKGELPPWYLNPLITFPSIFVVVGIGFYLVVALGGL 255          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A4D9D523_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D523_9STRA)

HSP 1 Score: 174 bits (440), Expect = 8.800e-49
Identity = 90/215 (41.86%), Postives = 122/215 (56.74%), Query Frame = 3
Query:  234 DVSGDGGVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLVFTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAAAAMGPEAEGFA---KVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNR 869
            D+  DGGV + +   G G  V PG    +KY G+  D G V  R +++R    DGTMI G++  +G + VG+ A ++  P Y YG  GV PVV P   L+FD++VLE  GN +NP +F D +P   R   SI  ++ ++ E          EG +   K  +WFKS+Y FG FEG+TGE  PWYL P ITFPIMF    AAF V+ +  G+S  R
Sbjct:   64 DLLRDGGVMKTIVTAGEGPLVTPGAEVAVKYEGRTAD-GQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVSPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMR----NEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIMFVTCAAAFYVLISFGGVSIKR 273          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S4IXD7_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IXD7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.160e-45
Identity = 87/211 (41.23%), Postives = 129/211 (61.14%), Query Frame = 3
Query:  252 GVTRVVRRKGTGKPVGPGDIAVLKYS---GKIIDTGLVFTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCSP--RYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAAAAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNR 869
            GVT+ V + G G P+  GD+A +KYS    K       F +S + +  + DG MI GW+  L  + VG+ +T+R +   +YGYG EGVPP VPPGA +E D+++L+ E  + + ++ + ++PL PRTP +I   +  +Q+ AA     E EG   +++  K+ Y FG FEG+TGE  PW+LRP ITFP+ F I GAAF V + ++G  T R
Sbjct:   49 GVTKSVTKSGNGVPLRLGDVATVKYSCYVPKGDGPSSPFAKSAKQKVVIGDGVMIKGWEVALQTMEVGERSTVRVTDAGQYGYGSEGVPPFVPPGAEIEMDMEILDVEAGL-DLSSLSTSDPLKPRTPGAIAAAYKSRQDQAAIEALNEKEGLEGLIEKAKNFYFFGFFEGETGERPPWFLRPSITFPLAFLIVGAAFYVSF-VSGAITER 257          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S4QU46_9STRA (Peptidylprolyl isomerase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QU46_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.290e-43
Identity = 92/230 (40.00%), Postives = 132/230 (57.39%), Query Frame = 3
Query:  252 GVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLV-FTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRC--SPRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAAA--AMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNRSPGGVADDIEVASTVAAVL 926
            G+ + V ++GTG  +  G +A +KYS  +  T    F +S++ R  + DG MI GW+  L  +NVG+ AT+R   + ++GYG+ GVPP+VP  A +E ++++L  E  +     FA+  PLTPRTP +IR  +  +Q A        P  EG        KS Y FG FEG+TG++APW+LRP ITFPI FAI GAAF V      IS   +   V D+++   T+  VL
Sbjct:   49 GLVKKVIKEGTGPALERGQVASVKYSCYLPGTETKPFAQSEKQRMIVGDGQMIEGWELALLTMNVGERATVRIDDAAKFGYGEAGVPPIVPSNAPIEMEMEILSAEERL-EMGAFANNEPLTPRTPKAIRAAYEARQSAKLQDEIENPPLEGLDYWKDKIKSYYFFGFFEGETGQQAPWFLRPSITFPIAFAIVGAAFYVSLKFGAISERGAQ--VTDELDELITLQGVL 275          
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Match: A0A7S1GGZ7_9STRA (Peptidylprolyl isomerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1GGZ7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.290e-43
Identity = 88/216 (40.74%), Postives = 122/216 (56.48%), Query Frame = 3
Query:  252 GVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLVFTRSDEYRCTLNDGTMISGWDAGLGGLNVGDEATIRCS-PRYGYGDEGVPPVVPPGATLEFDVQVLENEGNIMNPNTFADTNPL-------TPRTPDSIRTEFLRKQEAAAAAMGPEAEGFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVVYALNGISTNRSP 875
            G+++ V ++G G+ V PGD  V+KY    + +   F+RSD  R    DG MI G+D  +  +  G+ A++R S P+YGYG+ GVPP VPP A LE D++VL  E ++      A+   L        PRTP +I   + ++ +  A     E EG   V+   K+ Y FGLFEG+TG+EAPWYL+P ITFPI F + GAAF    A   IS    P
Sbjct:   49 GISKTVTQQGIGRSVRPGDNVVVKYVCNAVGSDAAFSRSDRQRFVAGDGIMIPGFDVAIRSMKEGERASVRISDPKYGYGEAGVPPFVPPMAQLELDLEVLNIEESVGLSADPAEMGALGMDGPINRPRTPAAIAAAYEQRMKQKAMNEPEEKEGIEWVVDKVKNSYFFGLFEGETGQEAPWYLKPSITFPIAFLVVGAAFWASLAGGAISERGMP 264          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1836.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSZ6_9PHAE1.290e-9157.92Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
D8LT45_ECTSI1.850e-7462.18Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2UWP8_9STRA7.520e-5944.44Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A7S4EZK8_CHRCT2.080e-4941.78Peptidylprolyl isomerase n=1 Tax=Chrysotila carter... [more]
A0A7S2I8Q8_9STRA6.600e-4940.76Peptidylprolyl isomerase n=1 Tax=Helicotheca tames... [more]
A0A7S0LHF9_9EUKA7.120e-4941.31Peptidylprolyl isomerase n=1 Tax=Coccolithus braar... [more]
A0A4D9D523_9STRA8.800e-4941.86Peptidylprolyl isomerase n=1 Tax=Nannochloropsis s... [more]
A0A7S4IXD7_9STRA3.160e-4541.23Peptidylprolyl isomerase n=1 Tax=Odontella aurita ... [more]
A0A7S4QU46_9STRA5.290e-4340.00Peptidylprolyl isomerase n=3 Tax=Ditylum brightwel... [more]
A0A7S1GGZ7_9STRA5.290e-4340.74Peptidylprolyl isomerase n=1 Tax=Skeletonema marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1836contigP-wetherbeei_contig1836:3809..5834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT45
PFAMsFKBP_C
Model size959
Max annot lvl2759|Eukaryota
KEGG koko:K09568
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Exons5
Evalue1.13e-75
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-08_004100.1
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
Cds size870
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1836.3.2prot_P-wetherbeei_contig1836.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1836 3809..5745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.9824836-CDS-P-wetherbeei_contig1836:3808..40571683186143.9824836-CDS-P-wetherbeei_contig1836:3808..4057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 3809..4057 -
1683186143.994176-CDS-P-wetherbeei_contig1836:4308..43561683186143.994176-CDS-P-wetherbeei_contig1836:4308..4356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 4309..4356 -
1683186144.003912-CDS-P-wetherbeei_contig1836:4618..47351683186144.003912-CDS-P-wetherbeei_contig1836:4618..4735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 4619..4735 -
1683186144.0133731-CDS-P-wetherbeei_contig1836:5052..52321683186144.0133731-CDS-P-wetherbeei_contig1836:5052..5232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 5053..5232 -
1683186144.0226061-CDS-P-wetherbeei_contig1836:5469..57451683186144.0226061-CDS-P-wetherbeei_contig1836:5469..5745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 5470..5745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.030941-UTR-P-wetherbeei_contig1836:5745..58341683186144.030941-UTR-P-wetherbeei_contig1836:5745..5834Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1836 5746..5834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1836.3.2

>prot_P-wetherbeei_contig1836.3.2 ID=prot_P-wetherbeei_contig1836.3.2|Name=mRNA_P-wetherbeei_contig1836.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=290bp
MDLGKRLFCACSSCAHSWSTCITQTSTILTRATNGASSSPRMSMAAPVDV
SGDGGVTRVVRRKGTGKPVGPGDIAVLKYSGKIIDTGLVFTRSDEYRCTL
NDGTMISGWDAGLGGLNVGDEATIRCSPRYGYGDEGVPPVVPPGATLEFD
VQVLENEGNIMNPNTFADTNPLTPRTPDSIRTEFLRKQEAAAAAMGPEAE
GFAKVLQWFKSIYVFGLFEGQTGEEAPWYLRPLITFPIMFAISGAAFLVV
YALNGISTNRSPGGVADDIEVASTVAAVLAAALGDAFHA*
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mRNA from alignment at P-wetherbeei_contig1836:3809..5834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1836.3.2 ID=mRNA_P-wetherbeei_contig1836.3.2|Name=mRNA_P-wetherbeei_contig1836.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2026bp|location=Sequence derived from alignment at P-wetherbeei_contig1836:3809..5834- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTTTATCGCGTATCCTGTGAGGTTGTTGGCTCCCCTGCCTCAATCTT CTTCGCTTTGCGGCACACGGACGCGAAAACTCTGCAGGTATGGATTTAGG GAAGAGGCTCTTTTGTGCTTGCTCAAGCTGCGCTCATTCCTGGAGTACGT GTATAACGCAGACGAGCACGATCCTCACCCGAGCTACAAATGGTGCTTCG TCCTCTCCCAGGATGTCAATGGCGGCGCCTGTGGACGTTTCTGGGGACGG AGGCGTGACGCGGGTGGTCCGACGGAAAGGCACGGGAAAGCCGGTTGGGC CTGGGGACATTGCCGTCCTCAAGTACTCGGGGAAAATCATCGACACCGGC CTCGTCTTCACACGGGCAAGCACGCAAGGAAGAATTTTAAATCTCATTTC TATAGTTCGCTTTGCCTTCCTCGGCCATTTTCTATCAAATTCGGCGCCCA CCATTTCTTCCTCGTTGATCCAAAGACGAGTCCCATTTGCTCTCTTTCTT TCAACACCTCTCACCCCCGCGATTCCGTACCCGGCAAACTCCTCGCTCTT TCCCCTGCCCTCGCTCCCCCGCCCGCGCTTCTCTTTCTTTCCCTTCCATC AGTCGGATGAGTACCGGTGCACGCTGAACGACGGCACCATGATCAGCGGT TGGGACGCCGGCCTAGGCGGGCTCAACGTCGGCGACGAGGCTACCATCCG CTGCTCGCCGCGATACGGCTACGGCGACGAGGGCGTGCCACCCGTCGTCC CGCCGGGGGCCACCCTCGAGTTCGACGTGCAGGTGTGTGCTTGGGTTGTA TTTCTTTCACTCATTTCCGTCAACTTATGGGGTCAAACCGCGCGTTTTGG GTGTCGTTATCGTACCCTTTCTCGAATAGATTCCTTCTGAGAAGAGCCAA GGCCTAGCAAACTGCGTTGCGCCTTGGTTGCGGCTGCCTCTGTGCTCCAT TGTAGAATTCGAGTGGAAATTTTGTAGGCACAATCCTTTAGTTCACACCA TCGCGCTGCCAAACCTCTTCTCCAGCTTTATCGGAATTGGGGTTTTCTCA CGCCCGATAATGCACCTGAACAACAAAATCGGTGTTCTTGAGACCGAAGG TGCTGGAGAACGAGGGCAACATAATGAACCCCAACACGTTCGCCGACACC AACCCGCTCACGCCGCGGACGCCCGACAGCATCCGTACCGAGTTCCTCCG GAAGCAGGAAGCCGCCGTGAGTCAAGATTCTAGAGCGGAGCTTGTCGGTA AATGTGGACAGTAGAAGCATAATCGACGTTCTTGTCGTTGGCGTTTTGGC CGCGTCCTTCTGTCATTTTGGAGACGGCGGCCGACGTTTAACGGCGCGTG TCTTGGATTCACGTGTTCACGTGCAGCAGGGAATTGTATGGTTGCCAGTT GCTGTGACTATTCCTTCTCTTGTCCCCGTGCTGCTTCGTTGCGTTTTTAT GCTTTCCCGCGGGTCAACGTCCTCGCAGGCTGCGGCGATGGGACCCGAGG CGGAGGGCTTCGCAAAGGTGTTGCAGGTGAGATATGAAGGCTTCTCGACT GCGTTCTCAGTCCACGATTCTGGGCGCGCATGGTTATTTCGCGCCAAGGT ATTCTTTCTCGGTCTAAGCGGTTGCCAGGAACCCGCTACTGCTGTCTCAC ACTGCTGATGCATGGGAAGAAGCGGCGAACGAGACGGCTGTACTGTTCGC CTCAATCACCCTCTCCAGTCCTTTCTGTCTTTTCGCTATTTCTATTTTCC CCCTGCGCTTCCTTTCCTCCGTGGCAGTGGTTCAAGAGCATTTACGTCTT CGGCCTCTTTGAGGGGCAGACGGGGGAGGAGGCCCCCTGGTACCTCCGCC CGCTCATCACTTTCCCCATCATGTTTGCCATCAGCGGCGCGGCTTTTCTG GTCGTCTACGCCCTCAACGGCATCTCCACCAACCGCAGCCCCGGCGGCGT CGCCGACGACATCGAGGTGGCGTCGACGGTGGCCGCGGTGCTTGCCGCCG CCCTCGGCGACGCGTTCCATGCATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1836:3809..5834-

>mRNA_P-wetherbeei_contig1836.3.2 ID=mRNA_P-wetherbeei_contig1836.3.2|Name=mRNA_P-wetherbeei_contig1836.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig1836:3809..5834- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTAGGGAAGAGGCTCTTTTGTGCTTGCTCAAGCTGCGCTCATTC
CTGGAGTACGTGTATAACGCAGACGAGCACGATCCTCACCCGAGCTACAA
ATGGTGCTTCGTCCTCTCCCAGGATGTCAATGGCGGCGCCTGTGGACGTT
TCTGGGGACGGAGGCGTGACGCGGGTGGTCCGACGGAAAGGCACGGGAAA
GCCGGTTGGGCCTGGGGACATTGCCGTCCTCAAGTACTCGGGGAAAATCA
TCGACACCGGCCTCGTCTTCACACGGTCGGATGAGTACCGGTGCACGCTG
AACGACGGCACCATGATCAGCGGTTGGGACGCCGGCCTAGGCGGGCTCAA
CGTCGGCGACGAGGCTACCATCCGCTGCTCGCCGCGATACGGCTACGGCG
ACGAGGGCGTGCCACCCGTCGTCCCGCCGGGGGCCACCCTCGAGTTCGAC
GTGCAGGTGCTGGAGAACGAGGGCAACATAATGAACCCCAACACGTTCGC
CGACACCAACCCGCTCACGCCGCGGACGCCCGACAGCATCCGTACCGAGT
TCCTCCGGAAGCAGGAAGCCGCCGCTGCGGCGATGGGACCCGAGGCGGAG
GGCTTCGCAAAGGTGTTGCAGTGGTTCAAGAGCATTTACGTCTTCGGCCT
CTTTGAGGGGCAGACGGGGGAGGAGGCCCCCTGGTACCTCCGCCCGCTCA
TCACTTTCCCCATCATGTTTGCCATCAGCGGCGCGGCTTTTCTGGTCGTC
TACGCCCTCAACGGCATCTCCACCAACCGCAGCCCCGGCGGCGTCGCCGA
CGACATCGAGGTGGCGTCGACGGTGGCCGCGGTGCTTGCCGCCGCCCTCG
GCGACGCGTTCCATGCATAG
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