mRNA_P-wetherbeei_contig18356.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A363TCW1_9CHLR (LacI family transcriptional regulator n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A363TCW1_9CHLR) HSP 1 Score: 179 bits (455), Expect = 3.960e-51 Identity = 97/263 (36.88%), Postives = 154/263 (58.56%), Query Frame = 1
Query: 16 TIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPSDD-YPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
TIK IA Q GV+H TVSRAL P + ET RI A+A +L Y PS RSL+TNR+ LG+++S I DPF+SE+++G+ D GYSLF+A++ + G K I Q++ E RVDG+ + C P+ A+ + ++P+V IN ++D YP+ +++DD G + +HL+ GH +I +LG+ +G + R ++ T+ + L+ DI + G+EA E +L E P+A+ YN +L + + Q+G+
Sbjct: 4 TIKDIARQAGVSHTTVSRALHHSPLISQETTRRIHAIALELNYHPSFAARSLKTNRSQALGVIVSHIDDPFFSEILQGIDDVAQANGYSLFIAASQHELGREKAIVQTMREHRVDGVIL-CSPRFAREQGHPLYSFDIPLVAINNQAEDEYPFSIYHDDVDGARQACEHLLGLGHQQIAFLGDATSGRTTQERLAGFQQTMQRSGLKISAEDIHLVAGSGARQGYEAVEYFLGL--EHVPSALICYNDMLAVGVLKGLRQAGL 263
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A3M1ZTQ4_9CHLR (LacI family transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1ZTQ4_9CHLR) HSP 1 Score: 179 bits (453), Expect = 8.280e-51 Identity = 102/264 (38.64%), Postives = 154/264 (58.33%), Query Frame = 1
Query: 13 VTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLIN-RPSDDYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
VTIK IA GV+H TVSRAL+G P + ET RI +AA+LGY P+ + R L+T R+G +G+++ I DPF+SEV+ G+ D + AGYS F++S++ D KTI + + ERRVDG+ + C Q+++ ++R ++ +P VLIN + +++ + +++DD G A HL++ GH +I +LGN G E R Y+ L++ L I G + G E L A PE PT V YN ++ I R A+ GV
Sbjct: 3 VTIKDIAKIAGVSHTTVSRALRGHPGIAPETVARIKKIAAELGYIPNTVARGLKTQRSGVVGVIVRRIVDPFFSEVLNGIEDTLQAAGYSFFLSSSNRDPEREKTIVRVMSERRVDGVIV-CSSQVSEHHRRQLERFRVPTVLINNQAAEESAHSIYHDDVYGGWAVTHHLIELGHKRIAFLGNARGGRTSEERLRGYKQALSEAGLPIDEACIVSGPNGLAEGGAEGARRLL-ALPE-LPTGVVCYNDVMAIGVMRVLAEHGV 263
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A3N5SPK5_9CHLR (LacI family transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5SPK5_9CHLR) HSP 1 Score: 175 bits (443), Expect = 2.310e-49 Identity = 96/264 (36.36%), Postives = 153/264 (57.95%), Query Frame = 1
Query: 13 VTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPS-DDYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
VT+K IA + GV+H TVSRAL +P + +T +RI +A +LGY PS R+L+TNR+ LG+V+S+I DPF+SE+++G+ + V +GYSLF+A+ D + I Q++ E R DG+ + C ++ R +PIV++N + +D+ Y +++DD G HL++ GHT+I Y+GN A+G R +R +A L I+ + G G E +L +RPE PTA+ YN ++ I + Q+G+
Sbjct: 3 VTVKDIAKKAGVSHSTVSRALHSNPLISEQTKQRIQQIAVELGYLPSAAARTLKTNRSQVLGVVLSSIDDPFFSEILQGIEEIVQSSGYSLFIAAAHRDPAREREIVQAMVEHRTDGVII-CSTSFSEERSRQFLRYGVPIVVVNNQAVEDFRYSIYHDDVDGSRQVTRHLIELGHTRIAYIGNSASGRTTLDRLTGFRQEMASAGLAVPAEYIYEASGGGTDDGLSVVEHFL-SRPEC-PTALVCYNDMVAIGVMKGLQQAGI 263
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A1F8SWS3_9CHLR (HTH lacI-type domain-containing protein n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_47_9 TaxID=1797665 RepID=A0A1F8SWS3_9CHLR) HSP 1 Score: 174 bits (441), Expect = 4.460e-49 Identity = 97/251 (38.65%), Postives = 143/251 (56.97%), Query Frame = 1
Query: 13 VTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPS-DDYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLL 762
+TIK IA GV+H TVSRAL P + +T ERI +A++LGY PS RSLRTNR+ LG+++S I DP++SE+++G+ D GYSLF+AS D +I Q++ E RVDG+ + C P + + N+PIV +N + +DY Y +++DD G HL+K H+KI YLGN +G + R ++ + + K+ R I G EA E + ++ P RPTA+ YN L+
Sbjct: 3 ITIKDIARHAGVSHTTVSRALNHSPLISLQTTERIQEIASELGYHPSVAARSLRTNRSQVLGVIVSHIADPYFSEILQGIDDVAQEHGYSLFIASAQNDPLRENSIVQTMREHRVDGVIL-CSPNFSAEQSNQLNSYNIPIVALNNQAPEDYRYAIYHDDVDGSKQVCQHLIKLRHSKIAYLGNALSGRTGQERLKGFKQAMQEAKIPVRPDFIHQVSGNSAGLGLEAVE-YFQSLPV-RPTALICYNDLM 250
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A1F8SJL5_9CHLR (HTH lacI-type domain-containing protein n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_49_13 TaxID=1797667 RepID=A0A1F8SJL5_9CHLR) HSP 1 Score: 174 bits (440), Expect = 6.290e-49 Identity = 97/263 (36.88%), Postives = 148/263 (56.27%), Query Frame = 1
Query: 16 TIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPSD-DYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
TIK IA GV+H TVSRAL P + +T ERI +A QLGY PS RSL+TNR+ LG+++S I+DP++SE+++G+ D GYSLF+AS D I Q++ E RV+G+ + C P + + + ++PIV IN +D DY + +++DD G HL+ GH KI YLG+ +G + R ++ + ++ L R I + GFE + ++K +RPTAV YN ++ + + Q+GV
Sbjct: 4 TIKDIARYAGVSHTTVSRALHHSPLISTQTTERIREIATQLGYHPSVAARSLKTNRSQVLGVIVSHISDPYFSEILQGIDDVAQENGYSLFIASAQHDPVRENAIVQTMREHRVEGVIL-CSPHFSPDQRSRLNFTSIPIVAINNQADEDYRFAIYHDDVDGSRQLCQHLIGLGHKKIAYLGDATSGRTTKERLDGFKQAMEEFDLPIRAEFIHQVSGNSPEQGFEGLDYFMKL--SERPTAVICYNDMMAVGVLKGLHQAGV 263
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A3D0CUT8_9CHLR (LacI family transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D0CUT8_9CHLR) HSP 1 Score: 173 bits (439), Expect = 7.230e-49 Identity = 97/264 (36.74%), Postives = 145/264 (54.92%), Query Frame = 1
Query: 13 VTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPSDD-YPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
V+IK IA GV+H TVSRAL+G P + T R+ LAA++GYSPS + R LRT+RT +G+V++ +TDPF +EV++G+ + AGYSLF+A+++ D + ++ E+RVDG+ + ++ + Y L+ E +PIVLIN D + + V NDD G HL++ GH +I YLGN G D R YR+ L L P + G+ G + P PT + YN ++ + A Q+GV
Sbjct: 3 VSIKDIARAAGVSHSTVSRALRGHPAISEATRSRVSQLAAEMGYSPSAVARGLRTSRTRVIGLVVTHLTDPFLTEVVQGIEALALDAGYSLFLATSNVDPDREVAVVKAFREQRVDGILVSS-SRVGERYLPLLAESQVPIVLINNQHDGTFAFSVTNDDRYGAEVVTRHLIESGHERIAYLGNHRGGQTDVDRLAGYRAALHAAGLTPDPALVVHGPNGRAPGGEAGVQALFPLDPH--PTGLVCYNDMMALGALHRLKQAGV 263
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A7C4NCR4_9CHLR (LacI family transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4NCR4_9CHLR) HSP 1 Score: 172 bits (436), Expect = 2.410e-48 Identity = 98/254 (38.58%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 13 VTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRP-SDDYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLK-ARPEDRPTAVPSYNHLLPI 768
+TIK IA GV+H TVSRAL P + ET I LAA++GY PS R L+T RT LG+++S I DPF+SEV++G+ + + PAGYSLFVA+T D K + Q++ +R VDG+ + C PQ + R++ LP+V++N + D PY+V+NDD G HL+ GH I YLGN G R +R + L +++ + G+ + +L AR RPTA+ YN L +
Sbjct: 3 ITIKDIAKAAGVSHTTVSRALHDHPAISRETVAEIKRLAAKMGYVPSATARGLKTRRTRALGVIVSHIDDPFWSEVLQGIDEVLHPAGYSLFVAATHRDRQREKEVVQAMVQRGVDGVIL-CAPQFSPDQSRVMHAYGLPMVIVNNEGASDSPYLVYNDDRYGSHLLARHLITLGHRDIAYLGNEQGGRTTIEREAGFREEMQAAGLVVPEQNVHLALESTPAGGYAGAQYFLSLAR---RPTAIMCYNDHLAV 252
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A1Y6K714_9CHLR (LacI family transcription regulator n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A1Y6K714_9CHLR) HSP 1 Score: 169 bits (429), Expect = 2.860e-47 Identity = 103/263 (39.16%), Postives = 144/263 (54.75%), Query Frame = 1
Query: 16 TIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLIN-RPSDDYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
TIKTIA GV+H TVSRAL+G P V TAERI A QL Y PS RSL+T RT LG+++S I DPF+SEV+ G+ A AGYSLF+ S++ DA I Q++ E+R+DG + C ++ R + PIV++N + +D Y + +++DD G HL++ GH I YLGN +G R + + L I + G L+ G E +L + PTAV +N +L I A + C Q+GV
Sbjct: 4 TIKTIAKITGVSHSTVSRALRGSPLVADLTAERIRKAAQQLDYLPSAAARSLKTKRTHVLGVILSGIADPFFSEVLNGIEGAAHAAGYSLFIGSSNHDADKEARIVQTMLEQRIDGGII-CSTPVSIERWRQFPTDRFPIVVVNNQAADHYNFSIYHDDIDGSRQLARHLIELGHKDIAYLGNSHSGKTTLDRLSGLQEEMEYHGLSVSPDHIHYVPGGSLQMGAEGMNYFLSL--PNPPTAVMCFNDMLAIGALKACRQAGV 263
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A6L3EZM8_9CHLR (LacI family transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3EZM8_9CHLR) HSP 1 Score: 169 bits (428), Expect = 3.930e-47 Identity = 102/265 (38.49%), Postives = 151/265 (56.98%), Query Frame = 1
Query: 13 VTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPSDDYPYI--VFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLLPIPAQRPCAQSGV 801
VTIK IA GV+H TVSRAL+G R+ ET ERI +A +LGY P+ + R L+T R+ LG+++ I DPF+SEV++G+ D + A YSLF+A++ + + I Q++ ER+V+G+ + QI R + ++P++LIN + D P I V++DDA G + HL+ GH +I +LGN+ G + R YR L + L I + GQ G E L+ P RPTAV YN L+ I A + Q+G+
Sbjct: 3 VTIKDIASVAGVSHTTVSRALRGHTRISTETIERIQKIADELGYVPNTVARGLKTRRSRVLGVIVRRIDDPFFSEVLQGIEDVLQEADYSLFLAASRRNPDREREIMQAMGERQVEGVIVSST-QIQPEQLRQLGHFDVPMILINNQAIDEPDIHSVYHDDAFGSQQLIQHLIDLGHQRIAFLGNVHGGKTNADRLRGYREALLQAGLSINPDYIVVGKNGQPDGGSEGIRDVLELSP--RPTAVICYNDLMAIGAIQGVLQAGL 264
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Match: A0A3N5M2L8_9CHLR (LacI family transcriptional regulator (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5M2L8_9CHLR) HSP 1 Score: 166 bits (421), Expect = 4.200e-46 Identity = 95/250 (38.00%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 16 TIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPSRIGRSLRTNRTGTLGIVISAITDPFYSEVIRGVHDAVMPAGYSLFVASTDTDAGCPKTIAQSLWERRVDGLFMGCLPQIAQPYQRLVQEENLPIVLINRPS-DDYPYIVFNDDARGVAASVDHLVKQGHTKIGYLGNLAAGGPDEARYLSYRSTLAKWKLEPRNRDIFFSQRGQLKAGFEATEMWLKARPEDRPTAVPSYNHLL 762
TIK IA + GVTH TVSRAL G P + ETA+RI A +LGY PS RSL+TN T LG+V+S+I DPF+SE+++G+ + AGYSLF+ ++ D + I Q++ E RVDG+ + C + R + + N PIV +N S +DY Y +F+DD G HL+ GH +I ++GN +G R ++ + +L I G + G A + +L RPTAV +N ++
Sbjct: 4 TIKDIAKRAGVTHSTVSRALHGSPLISQETADRIRKAALELGYQPSAAARSLKTNSTRVLGVVLSSIDDPFFSEILQGIEETAQTAGYSLFIGASQRDPQREQKIVQAMVEHRVDGIII-CSTSFGEQQGRQLSKYNRPIVAVNSQSVEDYRYSIFHDDVDGSRQITRHLIDLGHQRIAFIGNSLSGRTTLDRQAGFQQEMEAARLPILPGFIHQEPGGVPENGVAALDYYLSL--PSRPTAVFCFNDMV 250 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18356.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18356.1.1 >prot_P-wetherbeei_contig18356.1.1 ID=prot_P-wetherbeei_contig18356.1.1|Name=mRNA_P-wetherbeei_contig18356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp MGSHVTIKTIADQVGVTHGTVSRALKGDPRVKHETAERIVALAAQLGYSPback to top mRNA from alignment at P-wetherbeei_contig18356:1..801- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18356.1.1 ID=mRNA_P-wetherbeei_contig18356.1.1|Name=mRNA_P-wetherbeei_contig18356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig18356:1..801- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18356:1..801- >mRNA_P-wetherbeei_contig18356.1.1 ID=mRNA_P-wetherbeei_contig18356.1.1|Name=mRNA_P-wetherbeei_contig18356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig18356:1..801- (Phaeothamnion wetherbeei SAG_119_79)back to top |