mRNA_P-wetherbeei_contig18354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18354.1.1
Unique NamemRNA_P-wetherbeei_contig18354.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: A0A3M7QWT5_BRAPC (Fibroblast growth factor receptor-like n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QWT5_BRAPC)

HSP 1 Score: 132 bits (331), Expect = 3.080e-34
Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 1
Query:  238 SGTAAFTWYESYAPCCYDS-NADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQFQFL 669
            +G A  TWYESYA CC  + N D T  T+     + G FA  S  KSL+WVKS++++SF+D++ P    + T Y  + +R+ K   +F A+ ADTCG+ DCNGCC KN   A   +LVDMEY+TV+++  G++NAA G ++F+ L
Sbjct:  115 TGIAQLTWYESYARCCKSNPNYDPTVSTIECDFSYPGWFAGYSNQKSLSWVKSNNIISFFDSSDPNGVNWATKYARKTIRLKKNGKTFTAIIADTCGDHDCNGCCTKN---AQNGFLVDMEYYTVLKNL-GNLNAATGNIEFEIL 255          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: A0A226DHF4_FOLCA (Uncharacterized protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DHF4_FOLCA)

HSP 1 Score: 92.0 bits (227), Expect = 6.990e-20
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  247 AAFTWYESYAPCCYDSN-ADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQFQFL 669
            A  T Y SY PCC D N  DQ+EC  Y+ CK+ GQFA +SGTKS AWVK++++++     H  DA     Y  + + +     +  A   D C + DCN CC KN  +  T++L+D+E  T M+HF G     DG ++++ L
Sbjct:   27 ADLTNYWSYPPCCDDPNYPDQSECRDYSGCKYRGQFAFVSGTKSEAWVKANNIIAI----HHKDA---GKYKLKTLELRANGKTIKAKVYDECNDKDCNNCCTKN--SKRTKFLIDIERNT-MKHFGG---KGDGIVEWRCL 155          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: A0A250IPC6_9DELT (Uncharacterized protein n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250IPC6_9DELT)

HSP 1 Score: 80.1 bits (196), Expect = 4.400e-14
Identity = 51/139 (36.69%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  244 TAAFTWYESYAPCCYDSNADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQF 660
            TA  T Y SY       +    ECT YN C WAGQFAA SG KS AWV SH++V+ +    P    ++ H     + +  G  + V    DTC + DC+GCC +N   A    L+D+E +T     N      DG +Q+
Sbjct:  210 TANKTNYTSYP------DPGSEECTKYNGCTWAGQFAACSGKKSEAWVASHNIVAIF----PSMNAYKLH----DLCLKSGTKTIVVTVLDTCADSDCSGCCTQNRGNADA--LIDLESYT-----NARWGVPDGRIQW 327          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: A0A250J6V2_9DELT (Uncharacterized protein n=3 Tax=Cystobacter fuscus TaxID=43 RepID=A0A250J6V2_9DELT)

HSP 1 Score: 79.7 bits (195), Expect = 6.090e-14
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  244 TAAFTWYESYAPCCYDSNADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQF 660
            TA+ T Y SY       +    ECT YN C WAGQFAA SG KS AWV +H++V+ + N +      + H     + +  G  + V    DTC + DC+GCC +N   A    L+D+E +T     N      DG +Q+
Sbjct:  211 TASKTNYTSYP------DPGSEECTKYNGCTWAGQFAACSGKKSEAWVAAHNIVAVFPNMNA----LKLH----DLCLKSGTKTIVVTVLDTCADSDCSGCCTQNKGNADA--LIDLESYT-----NARWGVPDGRIQW 328          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: A0A2P6V9D2_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9D2_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 8.570e-14
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  280 CCYDSNADQTECTL----YNACKWAGQFAALSGTKSLAWVKSHDLVSFYD--NNHPGDAYFQTHYGNRY-VRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDI 633
            CC     D  +CT     Y+ CKW G FA L+G +SL+WVKS+++V+FY+  N+     + +   G    +R      +      DTC + DC+GCC +N N  G + LVD+E+ T  R + GD+
Sbjct:  389 CC--RRGDGKDCTRLGRDYSGCKWEGMFAGLNGKQSLSWVKSNNIVAFYEAPNSRNRKVWGEKWAGKTLRIRNPDSGKTMEVTIYDTCDDADCDGCCTRNANQHGGQ-LVDLEHHTARRFWGGDV 510          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: S9QAB7_9DELT (Uncharacterized protein n=7 Tax=Archangiaceae TaxID=39 RepID=S9QAB7_9DELT)

HSP 1 Score: 77.0 bits (188), Expect = 5.530e-13
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  244 TAAFTWYESYAPCCYDSNADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQF 660
            TA  T Y SY       +    ECT YN C WAGQFAA  G KS AWV +H++V+ + N +      + H     + +  G  + V    DTC + DC+GCC +N   A    L+D+E +T     N      DG++Q+
Sbjct:  210 TANKTNYTSYP------DPGSEECTKYNGCTWAGQFAACEGKKSEAWVAAHNIVAVFPNMNA----LKLH----DLCLKSGTKTIVVTVLDTCADSDCSGCCTQNKGNADA--LIDLESYT-----NERWGVPDGSIQW 327          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: UPI001CCDB327 (hypothetical protein n=1 Tax=Hyalangium sp. H56D21 TaxID=2861190 RepID=UPI001CCDB327)

HSP 1 Score: 77.0 bits (188), Expect = 5.570e-13
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  244 TAAFTWYESYAPCCYDSNADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQF 660
            TA  T Y SY     D N++  ECT YN C WAGQFAA S  K  +WV +H++V+ + N +         Y    + +  G  + V    DTC + DC+GCC +N   A    L+D+E +T     N      DG +Q+
Sbjct:  211 TANKTNYTSYP----DPNSE--ECTEYNGCTWAGQFAACSAKKPESWVAAHNIVAVFPNMNA--------YKLHDLCLKSGTKTIVVTVLDTCADSDCSGCCTRNKGDADA--LIDLESYT-----NARWGVPDGRIQW 328          
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Match: A0A1H7Z1Z9_STIAU (Uncharacterized protein n=2 Tax=Stigmatella TaxID=40 RepID=A0A1H7Z1Z9_STIAU)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-12
Identity = 47/139 (33.81%), Postives = 67/139 (48.20%), Query Frame = 1
Query:  244 TAAFTWYESYAPCCYDSNADQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQTHYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEYWTVMRHFNGDINAADGTLQF 660
            TA  T Y SY       +    ECT YN C WAGQFAA SG K  +WV +H++ + + N +         Y    + +  G+ + V    DTC + DC+GCC +N   A    L+D+E +T     N      DG +Q+
Sbjct:  211 TANKTNYTSYP------DPGSEECTEYNGCTWAGQFAACSGKKPESWVAAHNIAAVFPNMNA--------YKLHDLCLKSGSKTIVVTVLDTCADSDCSGCCTRNKGDADA--LIDLESYT-----NARWGVPDGRIQW 328          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A3M7QWT5_BRAPC3.080e-3444.83Fibroblast growth factor receptor-like n=1 Tax=Bra... [more]
A0A226DHF4_FOLCA6.990e-2039.44Uncharacterized protein n=1 Tax=Folsomia candida T... [more]
A0A250IPC6_9DELT4.400e-1436.69Uncharacterized protein n=1 Tax=Melittangium bolet... [more]
A0A250J6V2_9DELT6.090e-1435.97Uncharacterized protein n=3 Tax=Cystobacter fuscus... [more]
A0A2P6V9D2_9CHLO8.570e-1436.00Uncharacterized protein n=1 Tax=Micractinium condu... [more]
S9QAB7_9DELT5.530e-1335.25Uncharacterized protein n=7 Tax=Archangiaceae TaxI... [more]
UPI001CCDB3275.570e-1335.25hypothetical protein n=1 Tax=Hyalangium sp. H56D21... [more]
A0A1H7Z1Z9_STIAU1.050e-1233.81Uncharacterized protein n=2 Tax=Stigmatella TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18354contigP-wetherbeei_contig18354:146..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1208323.B30_06906
Model size672
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.13e-15
EggNOG OGsCOG3325@1|root,COG3325@2|Bacteria,1RHPN@1224|Proteobacteria
DescriptionBelongs to the glycosyl hydrolase 18 family
Cds size672
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.7094753-CDS-P-wetherbeei_contig18354:145..8171683186143.7094753-CDS-P-wetherbeei_contig18354:145..817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18354 146..817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18354.1.1prot_P-wetherbeei_contig18354.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18354 146..817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18354.1.1

>prot_P-wetherbeei_contig18354.1.1 ID=prot_P-wetherbeei_contig18354.1.1|Name=mRNA_P-wetherbeei_contig18354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MVKIAVGAGFLLFGFLFEAVVGQRCGKDFPGNTCPVTEPCCSQYGWCGKK
AAHCGAGCQFGCTVTTPKPTPGPTSGGGPSGTAAFTWYESYAPCCYDSNA
DQTECTLYNACKWAGQFAALSGTKSLAWVKSHDLVSFYDNNHPGDAYFQT
HYGNRYVRVTKGAVSFVALAADTCGNIDCNGCCRKNCNAAGTRYLVDMEY
WTVMRHFNGDINAADGTLQFQFL*
back to top

mRNA from alignment at P-wetherbeei_contig18354:146..817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18354.1.1 ID=mRNA_P-wetherbeei_contig18354.1.1|Name=mRNA_P-wetherbeei_contig18354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig18354:146..817+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAGATCGCGGTAGGGGCGGGTTTTCTGCTTTTTGGATTTCTGTT TGAGGCGGTTGTTGGTCAGCGCTGCGGGAAAGATTTTCCTGGAAACACTT GCCCGGTTACGGAACCATGCTGCTCGCAGTATGGCTGGTGCGGCAAAAAG GCAGCGCATTGCGGCGCCGGATGCCAGTTTGGATGCACTGTTACCACCCC CAAGCCCACCCCGGGACCGACCTCCGGCGGCGGCCCCTCCGGCACAGCGG CCTTCACCTGGTATGAGAGCTACGCCCCGTGCTGCTACGACAGCAACGCG GACCAGACGGAGTGCACGCTCTATAATGCGTGCAAGTGGGCGGGCCAGTT CGCCGCGCTCAGCGGCACCAAGTCACTAGCCTGGGTCAAGAGCCACGACC TTGTTTCCTTCTACGACAACAACCACCCAGGCGACGCATACTTCCAGACA CACTACGGCAACCGCTACGTCCGTGTCACCAAGGGAGCCGTGTCGTTCGT CGCGCTCGCCGCTGACACTTGCGGCAACATCGACTGTAACGGGTGCTGCC GCAAGAACTGCAACGCGGCGGGCACAAGGTACCTCGTTGACATGGAATAC TGGACGGTGATGCGCCACTTCAACGGCGACATCAACGCCGCCGACGGCAC GCTCCAGTTCCAGTTCCTCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18354:146..817+

>mRNA_P-wetherbeei_contig18354.1.1 ID=mRNA_P-wetherbeei_contig18354.1.1|Name=mRNA_P-wetherbeei_contig18354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig18354:146..817+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAGATCGCGGTAGGGGCGGGTTTTCTGCTTTTTGGATTTCTGTT
TGAGGCGGTTGTTGGTCAGCGCTGCGGGAAAGATTTTCCTGGAAACACTT
GCCCGGTTACGGAACCATGCTGCTCGCAGTATGGCTGGTGCGGCAAAAAG
GCAGCGCATTGCGGCGCCGGATGCCAGTTTGGATGCACTGTTACCACCCC
CAAGCCCACCCCGGGACCGACCTCCGGCGGCGGCCCCTCCGGCACAGCGG
CCTTCACCTGGTATGAGAGCTACGCCCCGTGCTGCTACGACAGCAACGCG
GACCAGACGGAGTGCACGCTCTATAATGCGTGCAAGTGGGCGGGCCAGTT
CGCCGCGCTCAGCGGCACCAAGTCACTAGCCTGGGTCAAGAGCCACGACC
TTGTTTCCTTCTACGACAACAACCACCCAGGCGACGCATACTTCCAGACA
CACTACGGCAACCGCTACGTCCGTGTCACCAAGGGAGCCGTGTCGTTCGT
CGCGCTCGCCGCTGACACTTGCGGCAACATCGACTGTAACGGGTGCTGCC
GCAAGAACTGCAACGCGGCGGGCACAAGGTACCTCGTTGACATGGAATAC
TGGACGGTGATGCGCCACTTCAACGGCGACATCAACGCCGCCGACGGCAC
GCTCCAGTTCCAGTTCCTCTAG
back to top