mRNA_P-wetherbeei_contig1832.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1832.3.1
Unique NamemRNA_P-wetherbeei_contig1832.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: A0A836CNH8_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.100e-10
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    4 RCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQGQG 159
            RC H L AH  G NDV F  +GA++A+ GDDG V+VWD ++GQ RAKL   G
Sbjct:  221 RCRHRLPAHASGINDVVFSESGALIASGGDDGCVKVWDTASGQQRAKLSAAG 272          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: A0A7W6RHT6_9PROT (Nucleoside phosphorylase/uncharacterized protein YjbI with pentapeptide repeats (Fragment) n=2 Tax=Roseospira visakhapatnamensis TaxID=390880 RepID=A0A7W6RHT6_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.790e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 GRCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKL 147
            G  + +L+ HGG  N   +  +G V+A+AGDDGT+R+WDA TG+PRA L
Sbjct: 1020 GTRLVSLTGHGGSVNACAWSPDGRVLASAGDDGTLRLWDAETGEPRAVL 1068          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: D8LL04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL04_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 6.210e-6
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:    4 RCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQG 153
            RC   + AH  G N V F   G ++ATAGDD  V+VWD  +G+ RA L+G
Sbjct:  246 RCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKG 295          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: K9WXT8_9NOST (WD40 repeat-containing protein n=1 Tax=Cylindrospermum stagnale PCC 7417 TaxID=56107 RepID=K9WXT8_9NOST)

HSP 1 Score: 50.1 bits (118), Expect = 1.170e-5
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 GRCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTG 129
            G+C+ TL  H  G   V F  +G+++ATAGDD TVR+WDA+TG
Sbjct: 1097 GKCIKTLEGHTSGVYFVIFSPDGSLLATAGDDQTVRIWDANTG 1139          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: A0A835SK34_CHLIN (ABC transporter domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SK34_CHLIN)

HSP 1 Score: 50.1 bits (118), Expect = 1.180e-5
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:    7 CVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKL 147
            CV   + H G  N VCF  +G  + + GDD T+RVWDASTG+ +A L
Sbjct: 1189 CVLVCTGHSGAVNGVCFSPDGCSIVSGGDDKTLRVWDASTGEYKATL 1235          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: UPI0019322967 (TIR domain-containing protein n=3 Tax=Frankia TaxID=1854 RepID=UPI0019322967)

HSP 1 Score: 49.3 bits (116), Expect = 2.200e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1
Query:    1 GRCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKL 147
            G C HTL+ H G    + F   GA++A+ GDDGT+R+WD  TG+ R  L
Sbjct: 1484 GACRHTLAGHLGQVRAIAFDPAGALLASTGDDGTLRLWDTDTGRERVAL 1532          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: UPI001E35538B (trypsin-like peptidase domain-containing protein n=1 Tax=Streptomyces griseosporeus TaxID=1910 RepID=UPI001E35538B)

HSP 1 Score: 48.9 bits (115), Expect = 3.000e-5
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   19 LSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQG 153
            L  H  G N V F ++G  +ATAG DGTVRVWD  T +PR  L+G
Sbjct:  759 LLGHSEGVNSVAFSSDGHTLATAGSDGTVRVWDTDTDKPRTTLRG 803          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: K9RZL8_SYNP3 (WD40 repeat-containing protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RZL8_SYNP3)

HSP 1 Score: 48.9 bits (115), Expect = 3.010e-5
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1
Query:    7 CVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQG 153
            C HTLS H G    + F  +G++VATAG D  +R+W  STGQP A L G
Sbjct:  801 CRHTLSLHRGQLLGLSFSPDGSLVATAGQDSLIRLWQVSTGQPVATLAG 849          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: A0A0N0AMZ4_9ACTN (Non-specific serine/threonine protein kinase n=2 Tax=Nocardiopsis sp. NRRL B-16309 TaxID=1519494 RepID=A0A0N0AMZ4_9ACTN)

HSP 1 Score: 48.5 bits (114), Expect = 4.100e-5
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   16 TLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQG 153
            T + H G  + V FGA+G  +ATAG DGTVR+WDA TG   A L G
Sbjct:  381 TFAGHEGSVDAVAFGADGDTLATAGSDGTVRLWDAGTGDQVATLTG 426          
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Match: UPI001EE4808B (winged helix-turn-helix domain-containing protein n=1 Tax=Salsipaludibacter albus TaxID=2849650 RepID=UPI001EE4808B)

HSP 1 Score: 48.5 bits (114), Expect = 4.130e-5
Identity = 26/53 (49.06%), Postives = 30/53 (56.60%), Query Frame = 1
Query:    1 GRCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQGQG 159
            G  V   + H    NDV F A+GA+VATAGDDG  +VWD  TGQ  A     G
Sbjct: 1080 GESVLAFTGHDVDINDVVFSADGALVATAGDDGAAKVWDVDTGQQVASFSYDG 1132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1832.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CNH8_9STRA7.100e-1055.77WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7W6RHT6_9PROT1.790e-651.02Nucleoside phosphorylase/uncharacterized protein Y... [more]
D8LL04_ECTSI6.210e-648.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K9WXT8_9NOST1.170e-553.49WD40 repeat-containing protein n=1 Tax=Cylindrospe... [more]
A0A835SK34_CHLIN1.180e-548.94ABC transporter domain-containing protein n=1 Tax=... [more]
UPI00193229672.200e-546.94TIR domain-containing protein n=3 Tax=Frankia TaxI... [more]
UPI001E35538B3.000e-553.33trypsin-like peptidase domain-containing protein n... [more]
K9RZL8_SYNP33.010e-551.02WD40 repeat-containing protein n=1 Tax=Synechococc... [more]
A0A0N0AMZ4_9ACTN4.100e-554.35Non-specific serine/threonine protein kinase n=2 T... [more]
UPI001EE4808B4.130e-549.06winged helix-turn-helix domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1832contigP-wetherbeei_contig1832:5803..5961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog148304.MAPG_02192T0
PFAMsHET,NACHT,WD40
Model size159
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.03e-06
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,38B6D@33154|Opisthokonta,3NYUK@4751|Fungi,3QKYQ@4890|Ascomycota,21RM6@147550|Sordariomycetes
DescriptionNACHT domain
Cds size159
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.8034-CDS-P-wetherbeei_contig1832:5802..59611683186142.8034-CDS-P-wetherbeei_contig1832:5802..5961Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1832 5803..5961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1832.3.1prot_P-wetherbeei_contig1832.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1832 5803..5961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1832.3.1

>prot_P-wetherbeei_contig1832.3.1 ID=prot_P-wetherbeei_contig1832.3.1|Name=mRNA_P-wetherbeei_contig1832.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
GRCVHTLSAHGGGANDVCFGANGAVVATAGDDGTVRVWDASTGQPRAKLQ
GQG
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mRNA from alignment at P-wetherbeei_contig1832:5803..5961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1832.3.1 ID=mRNA_P-wetherbeei_contig1832.3.1|Name=mRNA_P-wetherbeei_contig1832.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig1832:5803..5961+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGATGCGTGCACACGCTGTCGGCGCACGGCGGTGGCGCTAATGACGT CTGCTTCGGAGCCAACGGCGCGGTGGTCGCCACCGCCGGCGATGACGGCA CCGTGCGCGTCTGGGACGCGTCGACGGGGCAGCCACGCGCCAAGCTGCAG GGCCAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1832:5803..5961+

>mRNA_P-wetherbeei_contig1832.3.1 ID=mRNA_P-wetherbeei_contig1832.3.1|Name=mRNA_P-wetherbeei_contig1832.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig1832:5803..5961+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGATGCGTGCACACGCTGTCGGCGCACGGCGGTGGCGCTAATGACGT
CTGCTTCGGAGCCAACGGCGCGGTGGTCGCCACCGCCGGCGATGACGGCA
CCGTGCGCGTCTGGGACGCGTCGACGGGGCAGCCACGCGCCAAGCTGCAG
GGCCAGGGC
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