mRNA_P-wetherbeei_contig18302.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18302.1.1
Unique NamemRNA_P-wetherbeei_contig18302.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18302.1.1 vs. uniprot
Match: UPI001A0CC2D5 (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A0CC2D5)

HSP 1 Score: 72.0 bits (175), Expect = 4.080e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  154 DTARYFWALTRAAALASD-----LAPSNSLESLGGFLSGFGY--DAAARTSLSTLQRPATFPSTSPTGSDVRTFLQGRARQELTGALATLSQVSDDFRVSWTD 441
            DTAR+F+ALTR AA+  D     +A +NSL   GG L GFG   D   R++   +  P T P+ SPTGSD+++FL    R E+ GA+  L  +S+DF   WT+
Sbjct:   11 DTARFFYALTRVAAVGFDTYGDGVADNNSL---GGILDGFGSPSDDTKRSNFEAISFPETLPADSPTGSDLQSFLYDAVRPEIEGAIDNLDAISEDFSKQWTE 110          
BLAST of mRNA_P-wetherbeei_contig18302.1.1 vs. uniprot
Match: A0A7V0P4S3_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0P4S3_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 1.380e-11
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  154 DTARYFWALTRAAAL----ASDLAPSNSLESLGGFLSGFGYDAAARTSL----STLQRPATFPSTSPTGSDVRTFLQGRARQELTGALATLSQVSDDFRVSWTD 441
            D AR+F+ALTRAAAL     SD  P N L +LG  L  FG+ ++ R       S+   P T PSTSPTG D++ FL    R E+ GA+ +L  V+  F + WT+
Sbjct:  588 DVARFFYALTRAAALWFDMYSDGNPDNGLNTLGDILDAFGFSSSGRDPWDFGGSSDPCPETLPSTSPTGGDLQAFLYNVVRPEIEGAINSLDMVAQSFSIDWTE 691          
BLAST of mRNA_P-wetherbeei_contig18302.1.1 vs. uniprot
Match: A0A3B1D6T0_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1D6T0_9ZZZZ)

HSP 1 Score: 64.3 bits (155), Expect = 3.270e-9
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   76 ILQARDQFAVAVSLATSTTGATTAQLDTARYFWALTRAAALASDL---APSNSLESLGGFLSGFGYDAA--ARTSLSTLQRPATFPSTSPTGSDVRTFLQGRARQELTGALATLSQVSDDFRVSWTD 441
            +L+AR+ F  AV LA ++T   T   DTAR+F+ALTR AA+++D      S+ + +LG  L   G   +  AR +  T++     PS +P GS+++ FL    R E+ GA+A L  VS DF   W +
Sbjct:  194 MLKARNYFKAAVDLAGNSTSNDT---DTARFFYALTRVAAISADNFSDGNSSDMNNLGDILDRCGAPPSDTARVNWDTIECSDPLPSNTPDGSELQKFLYDVVRPEIKGAIANLETVSPDFNEQWRE 317          
BLAST of mRNA_P-wetherbeei_contig18302.1.1 vs. uniprot
Match: A0A3N5PYL3_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Geobacteraceae bacterium TaxID=2282154 RepID=A0A3N5PYL3_9DELT)

HSP 1 Score: 62.4 bits (150), Expect = 1.220e-8
Identity = 51/146 (34.93%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   19 VQEKIDQGTASLALGTSAGILQARDQFAVAVSLATSTTGATTAQLDTARYFWALTRAAALASDLAPSNS---LESLGGFLSGFGYDAA--ARTSLSTLQRPATFPSTSPTGSDVRTFLQGRARQELTGALATLSQVSDDFRVSWTD 441
            + E I +G  +L+ G    IL A+  FA A SLA S +      +DT R+F+A T   AL  D   +N+   L +LG  L  FG  ++   R  ++    P+ FPS SPTG+++++FL+ +   EL  A + L++VS+ F  +WT+
Sbjct:   58 IDELIPKGLDALSSGD---ILAAKRYFAQAESLAGSESSNI---VDTTRFFYAYTYILALGYDRLSNNTNDGLNNLGDILDAFGISSSDEVRKDVTAFPIPSPFPSNSPTGAELQSFLKNKTLPELIKAQSVLNKVSNGFGKTWTE 197          
BLAST of mRNA_P-wetherbeei_contig18302.1.1 vs. uniprot
Match: A0A522FX33_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A522FX33_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 2.050e-8
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  148 QLDTARYFWALTRAAAL----ASDLAPSNSLESLGGFLSGFGYDAAARTSLST-LQRPATFPSTSPTGSDVRTFLQGRARQELTGALATLSQVSDDFRVSWTD 441
            + DTAR+F AL+R AAL    ASD  P+N L + G  L  FG     R   +     P   PS SPTG +++TF+    R E+ GA+A L+ VS  F ++W +
Sbjct:  171 EADTARFFAALSRVAALWYNQASDGNPNNGLLTTGDILDAFGCSVFGRDPGNPDFTCPDILPSNSPTGGELKTFINNVMRPEIEGAIANLNNVSQSFNINWIE 273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18302.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001A0CC2D54.080e-1243.69Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7V0P4S3_9DELT1.380e-1143.27Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A3B1D6T0_9ZZZZ3.270e-937.80Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A3N5PYL3_9DELT1.220e-834.93Uncharacterized protein (Fragment) n=1 Tax=Geobact... [more]
A0A522FX33_9BACT2.050e-839.81Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18302contigP-wetherbeei_contig18302:65..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size441
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.1794035-CDS-P-wetherbeei_contig18302:64..5051683186142.1794035-CDS-P-wetherbeei_contig18302:64..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18302 65..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18302.1.1prot_P-wetherbeei_contig18302.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18302 65..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18302.1.1

>prot_P-wetherbeei_contig18302.1.1 ID=prot_P-wetherbeei_contig18302.1.1|Name=mRNA_P-wetherbeei_contig18302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
SAGSLAVQEKIDQGTASLALGTSAGILQARDQFAVAVSLATSTTGATTAQ
LDTARYFWALTRAAALASDLAPSNSLESLGGFLSGFGYDAAARTSLSTLQ
RPATFPSTSPTGSDVRTFLQGRARQELTGALATLSQVSDDFRVSWTD
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mRNA from alignment at P-wetherbeei_contig18302:65..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18302.1.1 ID=mRNA_P-wetherbeei_contig18302.1.1|Name=mRNA_P-wetherbeei_contig18302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig18302:65..505- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCTGGCAGCCTTGCCGTTCAGGAGAAGATTGACCAGGGGACCGCGTC TTTAGCACTCGGAACTTCAGCCGGCATCCTTCAAGCGAGAGACCAGTTTG CTGTGGCCGTCTCCCTAGCCACGTCGACAACGGGAGCAACCACTGCACAA CTCGATACCGCTCGTTACTTCTGGGCCTTGACCCGAGCCGCTGCTCTGGC CTCAGACCTCGCACCCTCCAACAGCCTGGAATCTTTGGGCGGCTTTCTGA GCGGGTTTGGTTATGATGCCGCGGCTCGCACTTCCCTCTCGACTCTACAA AGACCCGCAACCTTTCCTTCAACCAGTCCAACGGGTTCCGATGTGCGAAC GTTTTTGCAAGGCCGTGCCCGCCAAGAGTTAACAGGAGCGCTGGCAACCT TGTCCCAGGTATCGGATGATTTCCGCGTTAGCTGGACAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18302:65..505-

>mRNA_P-wetherbeei_contig18302.1.1 ID=mRNA_P-wetherbeei_contig18302.1.1|Name=mRNA_P-wetherbeei_contig18302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig18302:65..505- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCTGGCAGCCTTGCCGTTCAGGAGAAGATTGACCAGGGGACCGCGTC
TTTAGCACTCGGAACTTCAGCCGGCATCCTTCAAGCGAGAGACCAGTTTG
CTGTGGCCGTCTCCCTAGCCACGTCGACAACGGGAGCAACCACTGCACAA
CTCGATACCGCTCGTTACTTCTGGGCCTTGACCCGAGCCGCTGCTCTGGC
CTCAGACCTCGCACCCTCCAACAGCCTGGAATCTTTGGGCGGCTTTCTGA
GCGGGTTTGGTTATGATGCCGCGGCTCGCACTTCCCTCTCGACTCTACAA
AGACCCGCAACCTTTCCTTCAACCAGTCCAACGGGTTCCGATGTGCGAAC
GTTTTTGCAAGGCCGTGCCCGCCAAGAGTTAACAGGAGCGCTGGCAACCT
TGTCCCAGGTATCGGATGATTTCCGCGTTAGCTGGACAGAC
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