mRNA_P-wetherbeei_contig18265.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18265.1.1
Unique NamemRNA_P-wetherbeei_contig18265.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: A0A7C4XRB7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XRB7_9HYPH)

HSP 1 Score: 192 bits (487), Expect = 7.420e-61
Identity = 83/101 (82.18%), Postives = 95/101 (94.06%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELE 303
            TYADEVEGALAAFGYRM+LK+S+M   RK+RP+VW+WMQ+PRNAWAHYILAIHKGKEGHWILI+G KMCDT+T G+WTFVCDGPHRGARIME+FEV+R LE
Sbjct:   66 TYADEVEGALAAFGYRMTLKRSYMHLPRKQRPTVWSWMQQPRNAWAHYILAIHKGKEGHWILIRGAKMCDTYTEGRWTFVCDGPHRGARIMEVFEVRRSLE 166          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: A0A2S5M5F1_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5M5F1_HYPSQ)

HSP 1 Score: 189 bits (479), Expect = 9.790e-60
Identity = 82/102 (80.39%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELEG 306
            TYADEVE ALA FGYRM LK++F+ +ARKERPSVW WMQKPRNAWA+YILAIHKGKEGHWIL+KGVKMCDTFT GKWTFV DGPHRG RIME+FEV++ ++G
Sbjct:   59 TYADEVEAALAHFGYRMELKETFLHKARKERPSVWTWMQKPRNAWAYYILAIHKGKEGHWILVKGVKMCDTFTEGKWTFVVDGPHRGCRIMEVFEVRKAIDG 160          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: A0A7Y5CXT6_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CXT6_HYPSQ)

HSP 1 Score: 188 bits (477), Expect = 2.320e-59
Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELE 303
            TYADEVE ALA FG+RM LK+SFM +ARKERPSVW WMQKPRNAWA+YILAIHKGKEGHWIL+KGVKMCDTFT GKWTFV DGPH+G RIMEIFEVK+ ++
Sbjct:   64 TYADEVEAALAHFGFRMELKESFMHKARKERPSVWTWMQKPRNAWAYYILAIHKGKEGHWILVKGVKMCDTFTEGKWTFVVDGPHKGCRIMEIFEVKKSID 164          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: V5SFH4_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SFH4_9HYPH)

HSP 1 Score: 188 bits (477), Expect = 2.390e-59
Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELE 303
            TYADEVE ALA +GY M+LK++FM   RK+RPSVW WMQKPR+AWAHYILAIHKGKEGHWILIKGVKMCDTFT G+WTFVCDGPHRGARIME+FEV+R LE
Sbjct:   65 TYADEVEAALAVYGYGMTLKETFMHLERKKRPSVWTWMQKPRSAWAHYILAIHKGKEGHWILIKGVKMCDTFTEGRWTFVCDGPHRGARIMEVFEVRRALE 165          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: A0A2S5MWE9_HYPSQ (Uncharacterized protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MWE9_HYPSQ)

HSP 1 Score: 186 bits (473), Expect = 7.060e-59
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELE 303
            TYADEVE ALA +GY M+LK+SFM   RK+RPSVW WMQKPRNAW+HYILAIHKGKEGHWILIKGVKMCDTFT G+WTFVCDGPHRG RIMEIFEV+R ++
Sbjct:   55 TYADEVEAALAMYGYAMTLKESFMHLERKKRPSVWTWMQKPRNAWSHYILAIHKGKEGHWILIKGVKMCDTFTEGQWTFVCDGPHRGCRIMEIFEVRRAID 155          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: UPI0003708454 (hypothetical protein n=2 Tax=Hyphomicrobium TaxID=81 RepID=UPI0003708454)

HSP 1 Score: 184 bits (466), Expect = 1.130e-57
Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELE 303
            TYADEVEGALA +G++M LK+++M   RK+RP+VW WMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFT G+WTFV DGPHRGARIME+FEV++ LE
Sbjct:   65 TYADEVEGALAVYGFQMVLKETYMHLERKKRPTVWTWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTEGRWTFVVDGPHRGARIMEVFEVRKSLE 165          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: D8JYJ9_HYPDA (Uncharacterized protein n=4 Tax=Hyphomicrobium TaxID=81 RepID=D8JYJ9_HYPDA)

HSP 1 Score: 182 bits (461), Expect = 6.330e-57
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKR 294
            TYADEVE ALA FGYRM LK++ + RARKERP++W WMQKPRNAWA+YILAIHKGKEGHWIL+KGVKMCDTFT GKWTFV DGPHRG RIMEIFEVK+
Sbjct:   64 TYADEVESALAHFGYRMVLKETHLHRARKERPTLWTWMQKPRNAWAYYILAIHKGKEGHWILVKGVKMCDTFTEGKWTFVVDGPHRGCRIMEIFEVKK 161          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: A0A7C2LS27_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LS27_9HYPH)

HSP 1 Score: 180 bits (457), Expect = 2.570e-56
Identity = 76/100 (76.00%), Postives = 90/100 (90.00%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKREL 300
            TY +EV  ALA FGY M LK+S+MDR R+ERPS+W+WMQKPRNAWAHYILAIHKGKEGHW+LIKGVK+CDT++ G+W FVCDGPH+GARIME+FEV+R L
Sbjct:   66 TYTEEVAAALAHFGYTMQLKESYMDRPRRERPSLWSWMQKPRNAWAHYILAIHKGKEGHWVLIKGVKLCDTYSEGRWQFVCDGPHKGARIMEVFEVRRAL 165          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: F8JCH1_HYPSM (Uncharacterized protein n=6 Tax=Hyphomicrobium TaxID=81 RepID=F8JCH1_HYPSM)

HSP 1 Score: 180 bits (456), Expect = 3.650e-56
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKR 294
            TY+DEVE ALA FGYRM LK+S M RARKERP+ W WMQKPR+AWA+YILAIHKGKEGHWIL+KGVKMCDTFT GKWTFV DGPHRG RIMEIFEV++
Sbjct:   64 TYSDEVEAALAYFGYRMELKESHMHRARKERPTFWTWMQKPRSAWAYYILAIHKGKEGHWILVKGVKMCDTFTEGKWTFVVDGPHRGCRIMEIFEVRK 161          
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Match: A0A6N6T0G1_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T0G1_9HYPH)

HSP 1 Score: 179 bits (453), Expect = 1.110e-55
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    1 TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYILAIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKRELE 303
            TY +EV  ALA FGYRM LKQSFM   RKERPS+W WMQKPR+AW HYILAIHKGKEGHW+LIKGVK+CDT++ GKW FVCDGPH+GARIME+FEVK+ L+
Sbjct:   66 TYTEEVAAALAHFGYRMDLKQSFMHLPRKERPSIWAWMQKPRSAWVHYILAIHKGKEGHWVLIKGVKLCDTYSEGKWQFVCDGPHKGARIMEVFEVKKALD 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7C4XRB7_9HYPH7.420e-6182.18Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2S5M5F1_HYPSQ9.790e-6080.39Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A7Y5CXT6_HYPSQ2.320e-5982.18Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
V5SFH4_9HYPH2.390e-5982.18Uncharacterized protein n=1 Tax=Hyphomicrobium nit... [more]
A0A2S5MWE9_HYPSQ7.060e-5981.19Uncharacterized protein n=2 Tax=unclassified Hypho... [more]
UPI00037084541.130e-5779.21hypothetical protein n=2 Tax=Hyphomicrobium TaxID=... [more]
D8JYJ9_HYPDA6.330e-5782.65Uncharacterized protein n=4 Tax=Hyphomicrobium Tax... [more]
A0A7C2LS27_9HYPH2.570e-5676.00Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
F8JCH1_HYPSM3.650e-5681.63Uncharacterized protein n=6 Tax=Hyphomicrobium Tax... [more]
A0A6N6T0G1_9HYPH1.110e-5576.24Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18265contigP-wetherbeei_contig18265:2..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.401848-CDS-P-wetherbeei_contig18265:1..3101683186141.401848-CDS-P-wetherbeei_contig18265:1..310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18265 2..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18265.1.1prot_P-wetherbeei_contig18265.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18265 2..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18265.1.1

>prot_P-wetherbeei_contig18265.1.1 ID=prot_P-wetherbeei_contig18265.1.1|Name=mRNA_P-wetherbeei_contig18265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
TYADEVEGALAAFGYRMSLKQSFMDRARKERPSVWNWMQKPRNAWAHYIL
AIHKGKEGHWILIKGVKMCDTFTAGKWTFVCDGPHRGARIMEIFEVKREL
EG*
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mRNA from alignment at P-wetherbeei_contig18265:2..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18265.1.1 ID=mRNA_P-wetherbeei_contig18265.1.1|Name=mRNA_P-wetherbeei_contig18265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig18265:2..310+ (Phaeothamnion wetherbeei SAG_119_79)
ACATATGCCGACGAGGTCGAGGGCGCGCTTGCGGCCTTTGGCTACAGGAT GTCGCTGAAACAGAGCTTCATGGACCGGGCGCGCAAGGAACGGCCATCGG TGTGGAACTGGATGCAGAAGCCGCGCAATGCGTGGGCTCACTATATCCTG GCCATACATAAGGGCAAGGAAGGCCACTGGATCCTGATCAAGGGCGTGAA GATGTGCGACACGTTCACCGCGGGCAAGTGGACGTTCGTCTGCGACGGGC CGCACCGGGGAGCGAGAATCATGGAAATCTTCGAGGTCAAGCGGGAGCTC GAAGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18265:2..310+

>mRNA_P-wetherbeei_contig18265.1.1 ID=mRNA_P-wetherbeei_contig18265.1.1|Name=mRNA_P-wetherbeei_contig18265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig18265:2..310+ (Phaeothamnion wetherbeei SAG_119_79)
ACATATGCCGACGAGGTCGAGGGCGCGCTTGCGGCCTTTGGCTACAGGAT
GTCGCTGAAACAGAGCTTCATGGACCGGGCGCGCAAGGAACGGCCATCGG
TGTGGAACTGGATGCAGAAGCCGCGCAATGCGTGGGCTCACTATATCCTG
GCCATACATAAGGGCAAGGAAGGCCACTGGATCCTGATCAAGGGCGTGAA
GATGTGCGACACGTTCACCGCGGGCAAGTGGACGTTCGTCTGCGACGGGC
CGCACCGGGGAGCGAGAATCATGGAAATCTTCGAGGTCAAGCGGGAGCTC
GAAGGCTGA
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