mRNA_P-wetherbeei_contig18253.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18253.1.1
Unique NamemRNA_P-wetherbeei_contig18253.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: A0A2D7F786_9HYPH (Lipopolysaccharide biosynthesis protein n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7F786_9HYPH)

HSP 1 Score: 385 bits (990), Expect = 2.330e-124
Identity = 207/404 (51.24%), Postives = 298/404 (73.76%), Query Frame = 1
Query:   46 EPDIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRSNPFPEGNQRTSSPDS-TARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNRTAV 1254
            + DI +  LW  +K  L+GL+   + + +VTFG LSL+ PRY+SE+QL  V+K +NPFP+G Q     +  T RLD+ AINTH  AL++ DLLL+VAN+L L SR EF ++ GS     ++L++ G+  P A  + ++RVLS ++ +++V+A+ ++RFI IRF+S+D QL+A FAN LA+TYR SLV + V ET +V+DAL PK+ QL++EVL AE+ VE + A +DQFR+GPQSTPV  QRMA L  EL++AEA R+ +E++W++A +L R G+ + LP+VQ S ++QGLI QRVR+ERQ+AE+ A LL  HPRM+QLN+D+ G++R I  +V+K+V+G+EK  R+A  RV+ + K+I  LK KVV  + +EARL+ L+S A+SKR ELERLQ+QLEDN+T V
Sbjct:    9 QQDIDIFALWRGLKRSLRGLLTLTILVALVTFGVLSLMTPRYTSEAQLAIVAKTTNPFPDGKQTGGGREGLTQRLDREAINTHVNALMAPDLLLRVANQLDLRSRSEFGAS-GSNGIVQQVLQMVGLSQPEATGSTDDRVLSRVQERLQVSAVTDSRFIGIRFSSSDKQLAAKFANALAETYRKSLVEVLVNETKQVIDALVPKIEQLKREVLQAESQVERFLAETDQFRTGPQSTPVNTQRMAALNTELIKAEAERSIAESKWKSAVDLSRIGNVDELPEVQSSPVMQGLIDQRVRVERQVAEAQATLLAAHPRMKQLNSDLAGVKRSIRQQVQKIVRGLEKKYRTAAFRVQDIKKEIGGLKVKVVDTSEDEARLRSLESSAKSKRVELERLQRQLEDNKTLV 411          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: A0A2S5P4L0_HYPSQ (Lipopolysaccharide biosynthesis protein n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P4L0_HYPSQ)

HSP 1 Score: 382 bits (980), Expect = 2.750e-122
Identity = 206/400 (51.50%), Postives = 296/400 (74.00%), Query Frame = 1
Query:   52 DIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRS-NPFPEGNQRTSSPDSTA-RLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNR 1245
            DI + TLW ++K GL  L + +   G  T+G LS++APRY+SE+QL  V+K S +PF +  +  ++PDS +  +D+ AINTH RAL+S DL  ++A+++KL ++ EFNSA+GS+DT   +LR+ G+  P  GE+E++RVL    + +EV + KE+RFI IRF+S++  L+A+ AN +A+TYR+SL SL V ET +V  AL+PK+ +L K+V  AEA VE +R  +D+F  GPQ T +++Q++  L  EL R   AR+E E R ++AREL +SGSAEVLPDVQ+S L+Q L+QQRVR ERQ+AE +A+LLPGHPRMQQLNAD+ GL+RQIT EV K+V+G+EK+A++A  R ESV K ID LK+KVV   G++ +L++L++ A+SKR+EL+RLQ Q E N+
Sbjct:   11 DIDIGTLWASLKRGLPRLFMLSALAGGATYGVLSMMAPRYTSEAQLSVVAKGSQSPFSDPKREGAAPDSVSVSVDKEAINTHVRALMSPDLARRIADDMKLNTKKEFNSALGSLDTVGSLLRLVGLAGPRPGESEQDRVLGAFFKSLEVYSPKESRFIGIRFSSSEPALAAEIANRIAETYRSSLTSLRVVETDEVQRALEPKIVELIKDVAGAEAEVERFRGQTDRFVGGPQRTALIEQQLGELTAELTRTSGARSEVEGRAKSARELLKSGSAEVLPDVQRSPLIQNLVQQRVRAERQLAELSASLLPGHPRMQQLNADLNGLKRQITGEVSKLVEGLEKEAKAAVNREESVKKSIDTLKSKVVNTGGDDVKLRQLEAAAKSKRSELDRLQSQFEANK 410          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: A0A7Y5CXD5_HYPSQ (Lipopolysaccharide biosynthesis protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CXD5_HYPSQ)

HSP 1 Score: 343 bits (880), Expect = 6.600e-108
Identity = 191/407 (46.93%), Postives = 284/407 (69.78%), Query Frame = 1
Query:   31 HATYVEPDIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRS-NPFPEGNQRTSSPDS-TARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNR 1245
            H T    DI++++++ A+K     L++ +  +G +TF AL+ IAP+Y SE++L  V++ S N FP+  +  + PDS T ++D+ AINTH RAL S+DLL K+A ++ L  +PEFN+A+G VD    I+R+ G+G P AGE+E +RVL+ +R Q+EV + KE+RFI +R  S D  L+A  AN +A+TYR++L S  V E       +Q K+ +L  EV   E  V+ YR   D ++ G Q+  + +Q+M+ L  EL+RA+  R E+EAR ++A+E+ + GSA+ LPDVQKS L+Q L+QQRVR+ERQI+E +A+LLPGHPRMQQLNAD+ GL++Q+T EV K+V  +EK+A+ A  R +S+ K +D +K+KVV N   EA+L++L++ A++KRTELE LQ QLE NR
Sbjct:    4 HPTASPDDIEMSSIFGALKRNASKLLLTSAVLGGLTFLALTQIAPKYQSEAELAIVARSSSNSFPDA-KGAAGPDSVTTKMDKEAINTHVRALRSTDLLAKIAEQMALKDKPEFNAAVGPVDKADSIMRLIGLGGPRAGESERDRVLNALRNQLEVYSAKESRFIGVRMTSIDPALAAKIANGVAETYRSTLASDSVVEIDDQQKVIQGKIEKLMPEVAAVETDVDRYRREIDSYKGGSQNIGLNEQQMSELTAELVRAKGTRGEAEARAKSAKEMMKLGSADALPDVQKSPLIQNLVQQRVRIERQISELSASLLPGHPRMQQLNADLAGLKKQLTGEVNKLVDSLEKEAKVAQGREDSIKKSLDDIKSKVVTNAPEEAKLRQLEANAKAKRTELENLQTQLEGNR 409          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: A0A1I7NDA6_9HYPH (Uncharacterized protein involved in exopolysaccharide biosynthesis n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7NDA6_9HYPH)

HSP 1 Score: 332 bits (852), Expect = 1.520e-103
Identity = 188/403 (46.65%), Postives = 275/403 (68.24%), Query Frame = 1
Query:   28 PHATYVEPDIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSK-RSNPFPEGNQRTSSPDS-TARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQ 1230
            P A     +IQ++T++ A+K   + LV  ++ +G +TF  L ++APRY SE++L  V+K  S+ F +    +S PD  T R+D+ AINTH RAL SSDL+L++AN+LKL  RPEFNSA+G VD    +LR+ GIG P +GE+E +RV+S +R ++EV   KE+RFI IR  S D +L++  AN +A+ YR SL    V E   +   L+ K+ +L  EV  AE  ++ YR   D FR G Q+T + +Q+M+ L  EL RA+AAR E++AR  +ARE+ ++G+A+ L DVQKS L+Q L+QQRVR+ERQI+E +A LLP HPRM+QLNAD+ GL+ QI +E+ K+V  +EK+A+ A  R  S+ + +  +K +VV N   EA+L++L++ A++KRTELE LQ Q
Sbjct:    3 PRAPASPDEIQMSTVFDALKRKGRWLVPLSVVLGGLTFVVLMMMAPRYQSEAELAIVAKGASSTFSDPRSASSGPDLVTTRMDKEAINTHVRALQSSDLMLQIANDLKLAERPEFNSALGPVDQLDAVLRMIGIGGPRSGESERDRVMSALRSRLEVYTAKESRFIGIRMTSIDAELASKIANAMAENYRASLAEQGVTEIDDLQTVLKAKIDKLGAEVATAETEIDRYRGKIDGFRGGAQNTGLNEQQMSDLTAELSRAKAARGEADARAASAREMMKAGTADALADVQKSPLIQNLVQQRVRIERQISELSATLLPAHPRMRQLNADLAGLKLQIDSEISKIVSSLEKEAKVAQGRESSIAQSLADIKNRVVTNAPEEAQLRQLEANAKAKRTELENLQAQ 405          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: N0BD33_9HYPH (Lipopolysaccharide biosynthesis protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 TaxID=670307 RepID=N0BD33_9HYPH)

HSP 1 Score: 332 bits (851), Expect = 1.730e-103
Identity = 190/399 (47.62%), Postives = 265/399 (66.42%), Query Frame = 1
Query:   52 DIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRSN-PFPEGNQRTSSPDSTARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNR 1245
            DI +A+++ A+K   + L+  +L  G +T+ ALSL+APRY SE++L  V+K +   F + N  T     T R+D+ AINTH RA+ S +LL K+A +LKL  RPEFN A+G VD     LR+ GIG P  GET  +RVL  +R ++EV A KE+RFI +R  S D +L+A  AN LA+ YR SL    V E   +   LQ KV +L  EV  AE  V+ YR   D FR G Q+T + +Q+M+ L  EL +A+AAR E+E R ++ARE+   GSA+ L DVQKS L+Q L+QQRVR+ERQI+E +A LLPGHPRM+QLNAD+ GL+ QI  E+ K+V  +EK+A  A  R +S+ + +  +K +VV N   EA+L++L++ A++KRTEL+ +Q QLE NR
Sbjct:   11 DIDMASVFGALKRSARWLIPLSLVFGGLTYAALSLVAPRYQSEAELAIVAKGAGGTFADRNAATGPDLITTRMDKEAINTHVRAMQSQELLEKIAKDLKLAERPEFNGALGPVDKLDAALRLVGIGGPRKGETTRDRVLDALRSRLEVYAAKESRFIGVRVTSNDPELAAKIANALAENYRASLAEQGVTEVDDLQAVLQAKVQKLTTEVAAAETEVDRYRGKIDGFRGGAQNTGLNEQQMSELTAELTKAKAARGEAEVRAKSAREMIALGSADQLADVQKSPLIQNLVQQRVRIERQISELSATLLPGHPRMRQLNADLAGLKVQIDKEISKIVDSLEKEAAVAKGREDSIAQSLADIKARVVTNAPEEAQLRQLEATAKAKRTELDNIQAQLESNR 409          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: A0A109BJ39_HYPSL (Wzz domain-containing protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BJ39_HYPSL)

HSP 1 Score: 327 bits (838), Expect = 5.870e-102
Identity = 188/408 (46.08%), Postives = 272/408 (66.67%), Query Frame = 1
Query:   34 ATYVEPDIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRSNPFPEGNQRTSSPDSTA-RLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNRTAV 1254
            AT    DI +  +W ++K  +  LV+ +L  G +T+  LS   PRY+SE+Q++ V+ R     + N    S +S A RLD+ AINTH R+LLS DL L++  E KL   PEFN AIG+     RI    G+G   + E+E++RVL     +++V + +E+R I IRF S+D  L+A+ AN +A+ YRTSL +  + ET +V  ALQPK+ +L  EV D+EAAVE +RA +D F+ GP +T +  Q++  L  EL RA+AAR+E++AR ++ RE+ R+G+AE LPDVQ+S L+Q L+QQRVR+ERQ++E +A LLP HPRM+QL AD+ GL RQI +EV K+V+GIEK A  A  R  SV + ++ +K +  G   +E +L++L+++ARSKR ELERLQ + E NR A 
Sbjct:    2 ATAAPDDIDIGAIWRSLKRAMPKLVLLSLLTGALTYAVLSQFPPRYTSEAQIQVVAPR-----DANGADRSAESVASRLDREAINTHLRSLLSPDLALQIIAEEKLDKNPEFNDAIGTPGLLQRIKNAVGLGGTDS-ESEQDRVLKAFNSRLDVYSPRESRVIGIRFTSSDPALAAEVANRIAEAYRTSLATRSLSETDEVQQALQPKIDKLMNEVSDSEAAVEKFRAKADIFKGGPNNTGLNQQQLGDLNTELTRAQAARSEADARAQSVREMVRAGNAESLPDVQRSPLIQNLVQQRVRVERQLSELSATLLPAHPRMRQLRADLQGLERQIKSEVGKIVEGIEKGASIAASREASVRRSLEQVKKETAGTGEDEVQLRQLEAVARSKRAELERLQARYESNRIAA 403          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: D8JX58_HYPDA (Lipopolysaccharide biosynthesis protein n=4 Tax=Hyphomicrobium TaxID=81 RepID=D8JX58_HYPDA)

HSP 1 Score: 328 bits (840), Expect = 1.310e-101
Identity = 188/408 (46.08%), Postives = 268/408 (65.69%), Query Frame = 1
Query:    7 FKTQAVSPHATYVEPD-IQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRSNPFPEGNQRTSSPDS-TARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQ 1224
            F    V     +  PD I L +++ A K  L+ L+  AL  G +T+G LSLIAPRY SE++L  ++K ++        +  PD  T R+D+ AINTH RA+ S +LL K+A +LKL  RPEFN+A+G VD    ++R  G+G P  GET  +RVL  +R ++EV + KE+RFI +R  S D +L+A  AN LA+ YRTSL +  V E   +   LQ KV +L  EV DAE AV+ YR   D FR G Q+T + +Q+M+ L  EL +A+AAR E++ R ++ARE+   GSA+ L DVQKS L+Q L+QQRVR+ERQI+E +A LLPGHPRM+QLNAD+ GL+ QI  E+ K+V  +EK+A  A  R +S+ + +  +K +VV N   EA+L++L++ A++KRTEL+ +Q
Sbjct:   15 FDLSKVMQSRVHASPDDIDLGSVFGAFKRSLRWLIPLALLFGGLTYGVLSLIAPRYQSEAELAIIAKGADGTFADRNASGGPDLITTRMDKEAINTHVRAMQSQELLEKIAKDLKLEDRPEFNNALGPVDRLDAMMRAVGLGGPRKGETTRDRVLDALRARLEVYSAKESRFIGVRVTSNDPELAAKIANALAENYRTSLAAHGVTEVDDLQSVLQGKVQKLTTEVADAETAVDRYRGKIDGFRGGAQNTGLNEQQMSELTAELTKAKAARGEADVRAKSAREMITLGSADQLADVQKSPLIQNLVQQRVRIERQISELSATLLPGHPRMRQLNADLAGLKVQIGKEIAKIVDSLEKEAAVAKGREDSIAQSLADIKARVVTNAPEEAQLRQLEATAKAKRTELDNIQ 422          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: UPI000380428A (GumC family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000380428A)

HSP 1 Score: 327 bits (839), Expect = 1.370e-101
Identity = 185/399 (46.37%), Postives = 270/399 (67.67%), Query Frame = 1
Query:   52 DIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRSN-PFPEGNQRTSSPDSTARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNR 1245
            DI L +LW      +  L + A+     T+G L+LIAPRY SE+QL   SK +N PF +  +  ++   + R+D+ AINTH RAL+S+DL   +  ++KL   PEFNSA GS D  S +LR+ GIGAP A E++++R L+    ++EV + KE+RFI +RF S + +L+A  AN +A+TYR +L    + ET  V  AL+PK+A+L +E   AEAAVE +R  ++ F+ G Q+T + +Q++A L  EL + +AAR+E+EAR + ARE+   GSAE L DVQKS L+Q L+Q RVR+ERQI+E +A LLPGHPRM+QL AD+ GL+ QI AEV K+V G+ K+A+ A +R E++ + +  +KT++V     EA+L+ L++ A+SKR EL+RL+ Q E NR
Sbjct:   11 DIDLRSLWQTAIRSVPRLALLAVVTAAATYGVLTLIAPRYVSETQLAIESKSTNNPFADPTRSGANDSVSVRMDKEAINTHVRALMSTDLGETIVRDMKLADLPEFNSARGSPDMLSALLRLVGIGAPRASESDQDRALTAYFNRLEVYSPKESRFIGVRFWSNNPELAAAVANRIAETYRENLARQSISETDDVQKALEPKIAKLAEEAAVAEAAVEKFRGEANIFKGGQQATGLNEQQLAELNAELSKVKAARSEAEARAKQAREMQELGSAETLADVQKSPLIQNLVQSRVRVERQISELSATLLPGHPRMRQLQADLKGLKTQIAAEVAKIVDGMGKEAKVAALREEAIQRNVSEIKTRIVTAGPEEAKLRSLEADAKSKRAELDRLRAQYEANR 409          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: A0A6I0EGG5_HYPSQ (Polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EGG5_HYPSQ)

HSP 1 Score: 326 bits (835), Expect = 1.560e-101
Identity = 188/402 (46.77%), Postives = 278/402 (69.15%), Query Frame = 1
Query:   52 DIQLATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSKRSNPFPEGNQRTSSPDSTA-RLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQLEDNRTAV 1254
            DI ++ +W +++  L  L++ +L  G +T+  LS   PRY+SE+Q++ V+ +     +GN RT   DS A RLD+ AINTH R+LLS DL L++ +E KL   PEFN A+       RILR   IG     E+E++RVL     ++EV + KE+R I I+F S+D +L+A+ AN +A+TYRT L +  + ET +V  ALQPK+ +L KEV +AEAAVE +RA ++ F+ GP +T +  Q++A L  EL +A+AAR+E++AR ++ RE+ R+G+AE LPDVQ+S L+Q L+QQRVR+ERQ++E +A LLP HPRM+QL AD+ GL+RQI +EV K+V+GIEK A  A  R  +V + ++A+K +VVG   +E +L++L+++A+SKR ELERLQ + E NR   
Sbjct:    8 DIDISAVWRSLRRALPKLIVLSLITGGITYAVLSQFPPRYTSEAQIQVVAPK-----DGNDRTF--DSVAARLDKEAINTHLRSLLSPDLALQIISEEKLDKNPEFNDALQPPSKLDRILRALDIGTRNE-ESEQDRVLKAFFSRLEVYSPKESRVIGIQFTSSDPKLAAEVANRIAETYRTLLATRTLSETDEVQKALQPKIDKLVKEVAEAEAAVERFRAQANIFKGGPNNTGLNQQQLADLNAELTKAQAARSEADARAQSVREMVRAGNAEALPDVQRSPLIQNLVQQRVRVERQLSELSATLLPAHPRMRQLRADLEGLQRQIKSEVGKIVEGIEKSASIAASREAAVRQSLEAMKKQVVGTGDDEVQLRQLEAVAKSKRAELERLQARFEANRVTA 401          
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Match: UPI001FD8A3A7 (lipopolysaccharide biosynthesis protein n=1 Tax=Hyphomicrobium sp. 99 TaxID=1163419 RepID=UPI001FD8A3A7)

HSP 1 Score: 325 bits (834), Expect = 5.960e-101
Identity = 185/392 (47.19%), Postives = 270/392 (68.88%), Query Frame = 1
Query:   61 LATLWLAIKNGLKGLVIAALAIGVVTFGALSLIAPRYSSESQLEFVSK-RSNPFPEGNQRTSSPDS-TARLDQAAINTHARALLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETEEERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSLVSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQSTPVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSVLVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEKVVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSKRTELERLQQQ 1230
            ++T++ A+K+  + LV  ++A+G VTFG L+++APRY SE +L  V+K  S+ F +   ++S PD  T R+D+ AINTH RAL S DL+ ++AN+LKL  R EFNSA+G VD     LR+ GIG P +GE+E +RV+S  R ++EV   KE+RFI +R  S D  L+A  AN LA+ YR+SL    V E   +   L+ K+ +L  EV +AE  ++ YR   D FR G Q+T + +Q+M+ L  EL RA+ AR E+EAR  +ARE+ ++G+A+ L DVQKS L+Q L+QQRVR+ERQI+E +A LLPGHPRM+QLNAD+ GL+ QI +E+ K+V  +EK+A+ A  R  S+ + +  +K +VV N   EA+L++L++ A++KRTELE +Q Q
Sbjct:    1 MSTVFGALKSKSRWLVPLSIALGGVTFGVLTMMAPRYQSEVELAIVAKGASSTFSDPRSQSSGPDLVTTRMDKEAINTHVRALQSPDLMQQIANDLKLNERREFNSALGPVDQLDAALRMIGIGGPRSGESERDRVMSAFRSRLEVYTAKESRFIGVRMTSLDPALAAKIANALAENYRSSLAEQGVTEIDDLQTVLKAKIDKLSAEVANAETEIDRYRGKIDGFRGGSQNTGLNEQQMSDLTAELTRAKTARGEAEARAASAREMMKAGAADALADVQKSPLIQNLVQQRVRIERQISELSATLLPGHPRMRQLNADLAGLKLQINSEIGKIVASLEKEAKVAQGRETSIAQSLADIKARVVTNAPEEAQLRQLEANAKAKRTELENIQAQ 392          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7F786_9HYPH2.330e-12451.24Lipopolysaccharide biosynthesis protein n=2 Tax=Hy... [more]
A0A2S5P4L0_HYPSQ2.750e-12251.50Lipopolysaccharide biosynthesis protein n=2 Tax=Hy... [more]
A0A7Y5CXD5_HYPSQ6.600e-10846.93Lipopolysaccharide biosynthesis protein n=1 Tax=Hy... [more]
A0A1I7NDA6_9HYPH1.520e-10346.65Uncharacterized protein involved in exopolysacchar... [more]
N0BD33_9HYPH1.730e-10347.62Lipopolysaccharide biosynthesis protein n=1 Tax=Hy... [more]
A0A109BJ39_HYPSL5.870e-10246.08Wzz domain-containing protein n=2 Tax=Hyphomicrobi... [more]
D8JX58_HYPDA1.310e-10146.08Lipopolysaccharide biosynthesis protein n=4 Tax=Hy... [more]
UPI000380428A1.370e-10146.37GumC family protein n=1 Tax=Hyphomicrobium zavarzi... [more]
A0A6I0EGG5_HYPSQ1.560e-10146.77Polysaccharide biosynthesis tyrosine autokinase n=... [more]
UPI001FD8A3A75.960e-10147.19lipopolysaccharide biosynthesis protein n=1 Tax=Hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18253contigP-wetherbeei_contig18253:99..1352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog670307.HYPDE_31778
PFAMsAAA_31,Wzz
Model size1254
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.83e-104
EggNOG OGsCOG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1MVI9@1224|Proteobacteria,2TW0Q@28211|Alphaproteobacteria,3N9IK@45401|Hyphomicrobiaceae
DescriptionChain length determinant protein
Cds size1254
COG categoryDM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.0187018-CDS-P-wetherbeei_contig18253:98..13521683186141.0187018-CDS-P-wetherbeei_contig18253:98..1352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18253 99..1352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18253.1.1prot_P-wetherbeei_contig18253.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18253 99..1352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18253.1.1

>prot_P-wetherbeei_contig18253.1.1 ID=prot_P-wetherbeei_contig18253.1.1|Name=mRNA_P-wetherbeei_contig18253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=418bp
MPFKTQAVSPHATYVEPDIQLATLWLAIKNGLKGLVIAALAIGVVTFGAL
SLIAPRYSSESQLEFVSKRSNPFPEGNQRTSSPDSTARLDQAAINTHARA
LLSSDLLLKVANELKLPSRPEFNSAIGSVDTWSRILRIAGIGAPAAGETE
EERVLSVIRRQIEVAAMKETRFIAIRFNSTDGQLSADFANLLADTYRTSL
VSLPVEETSKVVDALQPKVAQLRKEVLDAEAAVESYRASSDQFRSGPQST
PVVDQRMAGLQEELLRAEAARNESEARWRTARELHRSGSAEVLPDVQKSV
LVQGLIQQRVRLERQIAESAAALLPGHPRMQQLNADVGGLRRQITAEVEK
VVQGIEKDARSATIRVESVTKQIDALKTKVVGNTGNEARLKELDSLARSK
RTELERLQQQLEDNRTAV
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mRNA from alignment at P-wetherbeei_contig18253:99..1352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18253.1.1 ID=mRNA_P-wetherbeei_contig18253.1.1|Name=mRNA_P-wetherbeei_contig18253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig18253:99..1352+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTCAAGACCCAAGCCGTTTCCCCCCACGCCACCTACGTGGAGCC CGACATCCAGCTCGCCACGCTCTGGCTTGCGATCAAGAACGGGCTCAAGG GACTGGTGATCGCCGCTCTGGCGATTGGCGTAGTGACGTTCGGTGCCCTC TCGTTGATCGCGCCTCGCTACAGCTCGGAGAGTCAACTCGAGTTCGTATC GAAGCGCAGCAACCCATTTCCGGAAGGCAACCAGCGCACAAGCAGCCCCG ACAGCACCGCCCGCCTCGACCAGGCCGCGATCAATACGCATGCCCGCGCC CTGCTCTCATCGGATCTGCTGCTCAAGGTCGCCAATGAACTGAAACTCCC CAGCCGTCCCGAATTCAACTCGGCGATCGGCTCCGTCGATACCTGGAGCC GCATCCTACGCATTGCCGGCATCGGCGCACCGGCAGCCGGCGAAACCGAA GAAGAACGCGTCCTGTCCGTCATCCGCCGTCAGATCGAAGTCGCCGCGAT GAAGGAAACCCGCTTCATTGCCATCCGCTTCAATTCAACCGACGGCCAGC TATCCGCGGATTTCGCGAACCTGCTCGCCGATACCTACCGCACGAGCCTC GTCTCTCTGCCCGTCGAGGAAACCAGCAAGGTCGTCGACGCCCTGCAGCC CAAGGTCGCCCAACTCCGCAAGGAAGTCCTGGACGCCGAGGCCGCCGTCG AGAGCTACCGGGCTTCATCCGATCAGTTCCGGTCCGGGCCACAGAGCACG CCCGTCGTCGATCAGCGCATGGCGGGCCTCCAAGAGGAACTGCTGCGCGC AGAGGCAGCGCGCAATGAAAGCGAAGCCCGCTGGCGAACGGCCCGCGAAC TTCATCGGTCGGGCAGTGCAGAGGTTCTACCCGACGTTCAAAAGTCGGTC CTCGTGCAGGGCTTGATCCAGCAGCGCGTACGCCTCGAGCGCCAGATCGC GGAAAGCGCCGCCGCGCTGCTCCCGGGCCATCCGCGCATGCAGCAACTCA ATGCCGACGTTGGCGGGTTGCGGCGGCAGATAACGGCCGAGGTCGAAAAA GTCGTCCAAGGAATCGAGAAGGATGCCCGGTCCGCCACGATCCGGGTCGA GAGCGTCACCAAGCAGATCGACGCCTTGAAGACGAAAGTCGTCGGCAATA CGGGGAACGAAGCGCGCCTCAAGGAGCTCGACTCGCTCGCGCGCTCCAAG CGCACCGAGCTCGAACGCCTCCAGCAGCAACTCGAGGACAACCGCACCGC CGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18253:99..1352+

>mRNA_P-wetherbeei_contig18253.1.1 ID=mRNA_P-wetherbeei_contig18253.1.1|Name=mRNA_P-wetherbeei_contig18253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig18253:99..1352+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTCAAGACCCAAGCCGTTTCCCCCCACGCCACCTACGTGGAGCC
CGACATCCAGCTCGCCACGCTCTGGCTTGCGATCAAGAACGGGCTCAAGG
GACTGGTGATCGCCGCTCTGGCGATTGGCGTAGTGACGTTCGGTGCCCTC
TCGTTGATCGCGCCTCGCTACAGCTCGGAGAGTCAACTCGAGTTCGTATC
GAAGCGCAGCAACCCATTTCCGGAAGGCAACCAGCGCACAAGCAGCCCCG
ACAGCACCGCCCGCCTCGACCAGGCCGCGATCAATACGCATGCCCGCGCC
CTGCTCTCATCGGATCTGCTGCTCAAGGTCGCCAATGAACTGAAACTCCC
CAGCCGTCCCGAATTCAACTCGGCGATCGGCTCCGTCGATACCTGGAGCC
GCATCCTACGCATTGCCGGCATCGGCGCACCGGCAGCCGGCGAAACCGAA
GAAGAACGCGTCCTGTCCGTCATCCGCCGTCAGATCGAAGTCGCCGCGAT
GAAGGAAACCCGCTTCATTGCCATCCGCTTCAATTCAACCGACGGCCAGC
TATCCGCGGATTTCGCGAACCTGCTCGCCGATACCTACCGCACGAGCCTC
GTCTCTCTGCCCGTCGAGGAAACCAGCAAGGTCGTCGACGCCCTGCAGCC
CAAGGTCGCCCAACTCCGCAAGGAAGTCCTGGACGCCGAGGCCGCCGTCG
AGAGCTACCGGGCTTCATCCGATCAGTTCCGGTCCGGGCCACAGAGCACG
CCCGTCGTCGATCAGCGCATGGCGGGCCTCCAAGAGGAACTGCTGCGCGC
AGAGGCAGCGCGCAATGAAAGCGAAGCCCGCTGGCGAACGGCCCGCGAAC
TTCATCGGTCGGGCAGTGCAGAGGTTCTACCCGACGTTCAAAAGTCGGTC
CTCGTGCAGGGCTTGATCCAGCAGCGCGTACGCCTCGAGCGCCAGATCGC
GGAAAGCGCCGCCGCGCTGCTCCCGGGCCATCCGCGCATGCAGCAACTCA
ATGCCGACGTTGGCGGGTTGCGGCGGCAGATAACGGCCGAGGTCGAAAAA
GTCGTCCAAGGAATCGAGAAGGATGCCCGGTCCGCCACGATCCGGGTCGA
GAGCGTCACCAAGCAGATCGACGCCTTGAAGACGAAAGTCGTCGGCAATA
CGGGGAACGAAGCGCGCCTCAAGGAGCTCGACTCGCTCGCGCGCTCCAAG
CGCACCGAGCTCGAACGCCTCCAGCAGCAACTCGAGGACAACCGCACCGC
CGTC
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