mRNA_P-wetherbeei_contig18229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18229.1.1
Unique NamemRNA_P-wetherbeei_contig18229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: D8LG74_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG74_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.090e-35
Identity = 74/132 (56.06%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTE--------------GGLSHPDG--VQDIEEL---GKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTVKV 342
            V  ELK TVYRPRLSLLGSR+QLCVHE VS MKG   N+AC ALVK RRCK+H    +                   PD   V DIEEL    K+  FCPYY GRG A +A+LVLMPYNYLLDP  RR +K+
Sbjct:   90 VANELKNTVYRPRLSLLGSRDQLCVHEEVSQMKGGAKNHACSALVKARRCKYHRGTEDMVERAGXXXXXXXXXXXXPPDQSTVPDIEELVSLAKKHEFCPYYLGRGHAPRAELVLMPYNYLLDPGTRRGIKI 221          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A836CNR1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 9.990e-33
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTEGGLSHPDGVQDIEEL---GKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTVKV 342
            V RELK T YRPRL+LLGSREQLCVH+ ++ ++G  +N AC AL   R C  H  L  G     D V DIEEL   G+ + FCPYY  RG AA ADLVLMPYNYLLD + RR +++
Sbjct:  120 VARELKSTAYRPRLALLGSREQLCVHKEIAQLRGGQLNAACQALASRRACAHHRALDAGAGPPADAVLDIEELAARGRAEGFCPYYLSRGAAADADLVLMPYNYLLDAAARRALRL 235          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A482SMY5_9ARCH (Helicase ATP-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMY5_9ARCH)

HSP 1 Score: 122 bits (306), Expect = 1.170e-30
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTE--GGLSH--PDGVQDIEEL---GKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTVKV 342
            V+REL+ T YRP++++LGSREQLC+H+ VS +KG+ +N+AC  L   R C++  NL    G + H   + V DIE+L   G+R+  CPY+Y R  +A AD++ MPYNYLLD S+R+T ++
Sbjct:  113 VIRELQSTAYRPKMAVLGSREQLCIHDKVSKLKGSAINHACTTLTTQRGCRYRNNLDSDNGSVIHVSQEEVVDIEDLALIGRRKAICPYFYSRDMSANADIIFMPYNYLLDASIRKTTRI 232          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A7S3ZF91_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZF91_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 3.580e-29
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   22 RTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTEGGLS-HPDGVQDIEEL---GKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTV 336
            +T Y+P +S+LGSR+Q+CVH  VS   G   N+AC  L   RRCKF+ N        HP GV DIE+L   G+++  CPY+Y RG +  A+++ MPYNYL+DP +R T+
Sbjct:    1 KTSYKPNISILGSRQQMCVHPQVSQETGTQQNHACRTLTASRRCKFYNNADRVSRDPHPGGVMDIEDLVHMGQQEEVCPYFYSRGMSKSAEVIFMPYNYLVDPKIRNTL 109          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A6A7G9Z9_9CRUS (Regulator of telomere elongation helicase 1 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9Z9_9CRUS)

HSP 1 Score: 113 bits (283), Expect = 5.640e-27
Identity = 49/116 (42.24%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTE-----GGLSHPDGVQDIEELGKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTV 336
            VV+ELK + YRP++++LGSR Q+C+H  +S + G   N+AC +LV  + C FH NL +       L     ++D+ ++G ++ FCPYYY R     ++L+LMPYNYL+DP +R+T+
Sbjct:  134 VVKELKASKYRPKMAILGSRSQMCIHPEISKLFGTRQNHACRSLVSKKACCFHKNLADLDEIDAELDTVLDIEDLVQIGTKREFCPYYYSRKSLEVSELILMPYNYLIDPKIRKTL 249          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: W7U1C1_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1C1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 9.370e-27
Identity = 61/121 (50.41%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTEGGLSH----PDGVQDIEEL---GKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTVKVR 345
            V+RELK T YRP   +LGSREQLCVH  VS +KG   N  CG L + R C++  NL      H      GV DIEEL   G+ +  CPYY  R     ADLVLMPYNYLLD   R+  +VR
Sbjct:  134 VIRELKATGYRPHTVILGSREQLCVHPEVSKLKGGLQNRRCGVLTQSRACRYKNNLDSYQAEHVGGGSPGVMDIEELKSLGQTKLVCPYYLMRQNTLHADLVLMPYNYLLDAGSRQPYQVR 254          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A8J5XLP4_DIALT (Helicase ATP-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLP4_DIALT)

HSP 1 Score: 113 bits (282), Expect = 1.260e-26
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNL-----TEGGLSHPDGVQDIEE---LGKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTV 336
            VV ELKRTVYRP++ + GSREQ CVH  VS ++G  + +AC  L K   CK+H NL     + GG+    GV DIEE   L + +  CP++Y R   A A+++L+PYNYL+DP  RR +
Sbjct:  114 VVSELKRTVYRPKMCVFGSREQSCVHADVSELRGLALTHACQTLTKANGCKYHANLMRQKASPGGVPVHPGVLDIEEFSALCRAKELCPFFYARELQADAEVLLVPYNYLIDPKSRRAL 232          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A7S0QM79_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QM79_9CRYP)

HSP 1 Score: 109 bits (272), Expect = 2.170e-26
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFHLNLTEGGLSHP--DGVQDIEEL---GKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTV 336
            V+REL+ T YRPR+S+LGSR+QLCVH  VS ++GA  N AC  LV  + C +H  + E         G+ DIE+L   G++Q  CPY+  R  A +A+++ MPYNYL D + RRT+
Sbjct:   81 VIRELRSTAYRPRISVLGSRQQLCVHPEVSKLRGAAQNCACQKLVAAKACLYHSRVMEHKYERDIAGGLLDIEDLCKHGQQQKVCPYFLSRELANEAEVIFMPYNYLTDTASRRTL 196          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A453EZX4_AEGTS (Helicase ATP-binding domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EZX4_AEGTS)

HSP 1 Score: 104 bits (260), Expect = 4.500e-26
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 VVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCK-------FHLNLTEGGLSHPDGVQDIEELGKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTV 336
            V++ELK T YRP++++LGSREQ+C+HE VS ++G   NN C  L K R C+       +  N TE G S P  ++D+  +G+ +  CPYY  R  +   D++  PYNYL+DP  RR++
Sbjct:   31 VIKELKATSYRPKMAVLGSREQMCIHEEVSKLRGKAQNNGCHYLCKKRLCRHNNIVTDYMKNNTELG-SEPFDIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSL 147          
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Match: A0A5J4YHK1_PORPP (Regulator of telomere elongation helicase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHK1_PORPP)

HSP 1 Score: 111 bits (277), Expect = 5.950e-26
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 KVVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRRCKFH--------LNLTEGGLSHPDGVQDIEELGKRQTFCPYYYGRGEAAQADLVLMPYNYLLDPSLRRTVK 339
            KVV EL+ T YRPRLS+LGSREQ C+HETVS +KG  M + C  +V  R+C +          N TE  +     ++++ ++G+    CPYY  R    +A+++L+PYNYL+DPS+R  +K
Sbjct:  169 KVVSELRNTSYRPRLSVLGSREQTCIHETVSKLKGPMMRHECRKIVSQRKCSYRNAVDGEAGKNATEEAIVGMADIEELVDIGRSHRACPYYLSRKIEKEAEIILLPYNYLIDPSVRDALK 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG74_ECTSI1.090e-3556.06Helicase ATP-binding domain-containing protein n=1... [more]
A0A836CNR1_9STRA9.990e-3356.03Helicase C-terminal domain-containing protein n=1 ... [more]
A0A482SMY5_9ARCH1.170e-3047.50Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S3ZF91_9EUKA3.580e-2946.79Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A6A7G9Z9_9CRUS5.640e-2742.24Regulator of telomere elongation helicase 1 (Fragm... [more]
W7U1C1_9STRA9.370e-2750.41DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A8J5XLP4_DIALT1.260e-2647.06Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S0QM79_9CRYP2.170e-2646.55Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A453EZX4_AEGTS4.500e-2642.37Helicase ATP-binding domain-containing protein n=1... [more]
A0A5J4YHK1_PORPP5.950e-2642.98Regulator of telomere elongation helicase 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18229contigP-wetherbeei_contig18229:185..1159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LG74
PFAMsDEAD_2,Helicase_C_2,zf-C3HC4_3
Model size369
Max annot lvl2759|Eukaryota
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.79e-36
EggNOG OGsCOG1199@1|root,KOG1132@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size369
COG categoryKL
BRITEko00000,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.098181-CDS-P-wetherbeei_contig18229:184..3331683186140.098181-CDS-P-wetherbeei_contig18229:184..333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18229 185..333 +
1683186140.109666-CDS-P-wetherbeei_contig18229:671..7441683186140.109666-CDS-P-wetherbeei_contig18229:671..744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18229 672..744 +
1683186140.1192238-CDS-P-wetherbeei_contig18229:1012..11591683186140.1192238-CDS-P-wetherbeei_contig18229:1012..1159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18229 1013..1159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18229.1.1prot_P-wetherbeei_contig18229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18229 185..1159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18229.1.1

>prot_P-wetherbeei_contig18229.1.1 ID=prot_P-wetherbeei_contig18229.1.1|Name=mRNA_P-wetherbeei_contig18229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
KVVRELKRTVYRPRLSLLGSREQLCVHETVSTMKGAGMNNACGALVKGRR
CKFHLNLTEGGLSHPDGVQDIEELGKRQTFCPYYYGRGEAAQADLVLMPY
NYLLDPSLRRTVKVRPVSLLES*
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mRNA from alignment at P-wetherbeei_contig18229:185..1159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18229.1.1 ID=mRNA_P-wetherbeei_contig18229.1.1|Name=mRNA_P-wetherbeei_contig18229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig18229:185..1159+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGGTGCGCGAACTGAAGCGGACTGTTTACCGGCCGCGGCTGTCGCT GCTGGGCTCGCGCGAGCAGCTCTGCGTGCACGAGACGGTGTCGACCATGA AGGGCGCCGGCATGAACAACGCCTGCGGCGCGCTCGTCAAGGGCCGCAGG TGCGATGCAGTGTGGGACCAGAAGAGAGGAAAAGGAATGGAATGAACCCT TTGGTGGCTTCTTTTGGGCGGTGCTTGATGCACTGTTCTGTTATACCTCC CTCGGTCAGCAGCTCATACCGTCTCACCGTTCTCAGGCGTAAAACCGTGC ATAGTATAGCAACGCGTCGCCTTGACCGGAACTGCACCGTGCATAGCATC GCCTTGATCGGAACGTGACTGAAAACCGAAAAGCATCGCATCGCCTTGAT CGGAACGTGACTGAAAACCGAAAAGCCAATATTTGCTGGCTGTCCGGGAT TCTCGCCTGTCCGCCAATCCTACCCTATCTCACACAGGTGTAAGTTCCAC CTGAACCTGACGGAGGGCGGCCTCTCGCACCCGGATGGCGTGCAGGACAT CGAGGAGCTCGTTCTCGAGGCAAGTGCCTCTTCCTTTTCTTTTCTTTCTT CTGCTTCGTTTGGTTTGTCACACGTGGCGACAAACGGTTTGTTGGCGTTC GGGCATCATACGACGGCTGGTGTCGACTGCAGGATACATTCGTCGCTGTC GCCGCGCCCAATTTAAGCGGAAGCCTTCTCAATCTTCTTCCTGCAGATTC GTTGAGCTGCGTTGCAATCACATCTTTTGGCGTTCCCTTCCTTGTTTCCA CCTTCCTTCTCTGATCGATAAACGACAGGGCAAGCGACAGACTTTCTGCC CGTACTACTATGGGCGCGGCGAGGCGGCGCAGGCCGACCTCGTGCTCATG CCCTACAACTACCTCCTTGATCCAAGCCTGCGTCGCACCGTCAAGGTCCG TCCAGTCAGTCTGTTAGAGAGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18229:185..1159+

>mRNA_P-wetherbeei_contig18229.1.1 ID=mRNA_P-wetherbeei_contig18229.1.1|Name=mRNA_P-wetherbeei_contig18229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig18229:185..1159+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGGTGCGCGAACTGAAGCGGACTGTTTACCGGCCGCGGCTGTCGCT
GCTGGGCTCGCGCGAGCAGCTCTGCGTGCACGAGACGGTGTCGACCATGA
AGGGCGCCGGCATGAACAACGCCTGCGGCGCGCTCGTCAAGGGCCGCAGG
TGTAAGTTCCACCTGAACCTGACGGAGGGCGGCCTCTCGCACCCGGATGG
CGTGCAGGACATCGAGGAGCTCGGCAAGCGACAGACTTTCTGCCCGTACT
ACTATGGGCGCGGCGAGGCGGCGCAGGCCGACCTCGTGCTCATGCCCTAC
AACTACCTCCTTGATCCAAGCCTGCGTCGCACCGTCAAGGTCCGTCCAGT
CAGTCTGTTAGAGAGCTAA
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