mRNA_P-wetherbeei_contig18129.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18129.2.1
Unique NamemRNA_P-wetherbeei_contig18129.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: UPI0019C00566 (DeoR/GlpR transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019C00566)

HSP 1 Score: 215 bits (548), Expect = 5.350e-68
Identity = 115/152 (75.66%), Postives = 129/152 (84.87%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GTTTSIFARELL+KRNLTV+TNSSDIARTLATVNGNRVYMAGGELNG NG AFGPSAI FA SF VR AII+IGALDA FGPSD+YLAEAEFARMVLSRGE R+I++D+SKFGR ALIKVCDF  ++ +I++  P A LAA L  A V   +
Sbjct:  101 GTTTSIFARELLRKRNLTVITNSSDIARTLATVNGNRVYMAGGELNGDNGGAFGPSAIQFAQSFRVRFAIITIGALDAAFGPSDNYLAEAEFARMVLSRGERRIIVTDSSKFGRTALIKVCDFDMVDCIISEAPPPAGLAAALAAANVKCEI 252          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A847ZYS5_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZYS5_9HYPH)

HSP 1 Score: 193 bits (490), Expect = 4.070e-59
Identity = 103/152 (67.76%), Postives = 118/152 (77.63%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GTTTSIFA+EL  +R LTVVTNSSDIARTLATVNGNRVYMAGGEL   NGAAFGP A+ F + F VRH+ ISI AL A  GP D    EAE ARM LSR + R+ILSD++KFG+ AL+KVCDF +IN+LITDG P A LA  L +AGV+V V
Sbjct:  103 GTTTSIFAQELRNRRGLTVVTNSSDIARTLATVNGNRVYMAGGELKADNGAAFGPPAVEFISRFRVRHSFISIAALHAVDGPMDMAFEEAELARMALSRSDNRIILSDSTKFGKTALVKVCDFSEINQLITDGAPPADLAMALDKAGVAVTV 254          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A2N6AZZ8_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6AZZ8_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 9.340e-55
Identity = 97/152 (63.82%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GTTTSI ARELL K  LT+VTNSSD+ARTL+TVNGNRVYMAGGEL+G NGAAFG SAIAF A F VRHAIISI A+DAD G  D +LAEAEFAR VLS G+ R++++D +KF R AL++V  F + +RL+TD  P   +A  L+ AG  V +
Sbjct:  101 GTTTSILARELLGKTGLTIVTNSSDVARTLSTVNGNRVYMAGGELHGDNGAAFGRSAIAFIADFRVRHAIISIAAMDADLGLMDYHLAEAEFARTVLSCGQERIVITDHTKFNRAALVRVAGFDEFDRLVTDRAPPDDIAEKLRHAGTRVEI 252          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A1L3STN7_9HYPH (DeoR family transcriptional regulator n=1 Tax=Aquibium oceanicum TaxID=1670800 RepID=A0A1L3STN7_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 9.220e-54
Identity = 96/152 (63.16%), Postives = 115/152 (75.66%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GTTTSI AREL  +R LT+VTNSSDIARTLATVNGN+V+MAGGEL+G NGAAFG +AI F A F VRHAIISIGA+DA  GP D  L EAEFARM L  GE R+I +D +KFGR AL+KVC F D + L++D  P  ++A  ++ AG +  V
Sbjct:  100 GTTTSILARELSARRELTIVTNSSDIARTLATVNGNKVFMAGGELHGDNGAAFGRTAIDFIARFRVRHAIISIGAVDAALGPMDYLLEEAEFARMALQCGERRIIATDHTKFGRAALVKVCGFGDFDLLVSDRAPPGEIAEAIEAAGATWEV 251          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A3R9Y463_9HYPH (DeoR/GlpR transcriptional regulator n=2 Tax=Aquibium carbonis TaxID=2495581 RepID=A0A3R9Y463_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 9.780e-54
Identity = 98/154 (63.64%), Postives = 115/154 (74.68%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNVVA 462
            GTTTSI AREL  +R LT+VTNSSD+ARTLATVNGN+V+MAGGEL+G NGAAFG +AI FAA F VRHAIISIGA+DA  GP D  L EAEFAR VLS G+ R++ +D +KF R AL+KVCDF D + L+ D  P A +A  L  AG    V A
Sbjct:  102 GTTTSILARELAARRELTIVTNSSDVARTLATVNGNKVFMAGGELHGDNGAAFGRTAIDFAARFRVRHAIISIGAIDARMGPMDYLLEEAEFARTVLSCGDNRILATDHTKFDRSALVKVCDFADFDLLVADRPPPAAIADALGAAGGRFEVAA 255          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A7G6S9A1_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Phyllobacterium sp. 628 TaxID=2718938 RepID=A0A7G6S9A1_9HYPH)

HSP 1 Score: 178 bits (452), Expect = 1.910e-53
Identity = 94/154 (61.04%), Postives = 117/154 (75.97%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNVVA 462
            GTTTS  ARELL+ R+LTVVTNSSDIARTLATVNGN+V+MAGGEL   NGAAFG  A+ F + F+V H++ISIGA+DA  G  D  L EAEFARMVLSRGE  ++++DASKFGR  L++VCDF   + L+TD  P   ++A L  AG+ V++ A
Sbjct:   99 GTTTSFLARELLQYRSLTVVTNSSDIARTLATVNGNKVFMAGGELRSDNGAAFGALAVDFISRFNVAHSVISIGAIDATHGLMDYNLEEAEFARMVLSRGERSIVVTDASKFGRQGLVQVCDFTGFDELVTDMAPSGDISASLHHAGIQVSIAA 252          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A839STX3_9HYPH (DeoR family glycerol-3-phosphate regulon repressor n=1 Tax=Limibacillus halophilus TaxID=1579333 RepID=A0A839STX3_9HYPH)

HSP 1 Score: 177 bits (448), Expect = 7.230e-53
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNVV 459
            GTTTSI ARELL K+ L +VTNSSD+AR LATVNGN+VYMAGGEL+G NGAAFG SAI F ++F VR AIISIGA+DA  GP D  LAEAEFAR VL  G+ R++++D SKF R AL+KVCDF++ + L+TD  P   +A  L  AG  V VV
Sbjct:  100 GTTTSILARELLAKKRLIIVTNSSDVARILATVNGNKVYMAGGELHGDNGAAFGRSAIDFISNFKVRFAIISIGAIDARVGPMDFRLAEAEFARRVLECGDERLVITDHSKFQRSALVKVCDFEEFDHLVTDVPPPEDIAKRLTAAGTKVTVV 252          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A7Y2BR14_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BR14_9HYPH)

HSP 1 Score: 177 bits (448), Expect = 1.110e-52
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GT+TSI ARELL KRNLTV+TNSSDIARTLATVNGN V+MAGG+L G NGAAFG SA+ F   F VRHAI+SIGA+DA+ GP D    EAEFA  VL +GE   I++D +KFGR  L+KVCDF DI+ LITD  P   +   L +A V V V
Sbjct:  107 GTSTSILARELLTKRNLTVITNSSDIARTLATVNGNTVFMAGGQLRGDNGAAFGSSAVEFICKFRVRHAIVSIGAIDAETGPMDIDFGEAEFANAVLRQGECAAIITDHTKFGRAGLVKVCDFTDIHTLITDQPPPGDIMDKLLQAQVDVVV 258          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A1H0LG84_9HYPH (Transcriptional regulator, DeoR family n=5 Tax=Phyllobacterium TaxID=28100 RepID=A0A1H0LG84_9HYPH)

HSP 1 Score: 176 bits (446), Expect = 1.630e-52
Identity = 98/152 (64.47%), Postives = 112/152 (73.68%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GTTTS  ARELL+ RNLTVVTNSSDIARTLATVNGN+V+MAGGEL   NGAAFG  AI F + F+V H+IISIGA+DA  G  D  L EAEFARMVLSRGE  V++SDASKFGR  L++VCDF   + L+TD  P   +   L  AG  V V
Sbjct:   99 GTTTSFLARELLQYRNLTVVTNSSDIARTLATVNGNKVFMAGGELRSDNGAAFGALAIDFISRFNVAHSIISIGAIDATHGLMDYNLEEAEFARMVLSRGERSVVVSDASKFGRQGLVQVCDFTGFDELVTDSPPPDDVLQSLSRAGARVRV 250          
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Match: A0A833M4L1_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Rhizobiaceae bacterium TaxID=1913961 RepID=A0A833M4L1_9HYPH)

HSP 1 Score: 175 bits (444), Expect = 3.270e-52
Identity = 97/152 (63.82%), Postives = 114/152 (75.00%), Query Frame = 1
Query:    1 GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNGAAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRGETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSVNV 456
            GTTTS  ARELL  R LTVVTNSSDIARTLATVNGN+VYMAGGEL   +GAAFG SAI F + F V HA+IS+GA+DA  G  D  L EAEFARMVLSRG   + ++D SKFGR  L+KVCDF  +  L+TD  P A++A  L+EAGV++ V
Sbjct:  100 GTTTSYLARELLGHRRLTVVTNSSDIARTLATVNGNKVYMAGGELRSDSGAAFGVSAIEFVSRFSVTHAVISVGAVDAANGIMDYDLEEAEFARMVLSRGARAIAVTDHSKFGRHGLVKVCDFAVLGELVTDRAPPAEIATRLEEAGVTLTV 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18129.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C005665.350e-6875.66DeoR/GlpR transcriptional regulator n=1 Tax=Hyphom... [more]
A0A847ZYS5_9HYPH4.070e-5967.76DeoR/GlpR transcriptional regulator n=1 Tax=Phyllo... [more]
A0A2N6AZZ8_9HYPH9.340e-5563.82DeoR/GlpR transcriptional regulator n=1 Tax=Hyphom... [more]
A0A1L3STN7_9HYPH9.220e-5463.16DeoR family transcriptional regulator n=1 Tax=Aqui... [more]
A0A3R9Y463_9HYPH9.780e-5463.64DeoR/GlpR transcriptional regulator n=2 Tax=Aquibi... [more]
A0A7G6S9A1_9HYPH1.910e-5361.04DeoR/GlpR transcriptional regulator n=1 Tax=Phyllo... [more]
A0A839STX3_9HYPH7.230e-5363.40DeoR family glycerol-3-phosphate regulon repressor... [more]
A0A7Y2BR14_9HYPH1.110e-5263.16DeoR/GlpR transcriptional regulator n=1 Tax=Hyphom... [more]
A0A1H0LG84_9HYPH1.630e-5264.47Transcriptional regulator, DeoR family n=5 Tax=Phy... [more]
A0A833M4L1_9HYPH3.270e-5263.82DeoR/GlpR transcriptional regulator n=1 Tax=Rhizob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18129contigP-wetherbeei_contig18129:907..1374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1449065.JMLL01000010_gene1418
PFAMsDeoRC,HTH_DeoR
Model size468
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02444
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.58e-53
EggNOG OGsCOG1349@1|root,COG1349@2|Bacteria,1MUJG@1224|Proteobacteria,2TR8U@28211|Alphaproteobacteria,43HAM@69277|Phyllobacteriaceae
DescriptionDeoR C terminal sensor domain
Cds size468
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.7487335-CDS-P-wetherbeei_contig18129:906..13741683186136.7487335-CDS-P-wetherbeei_contig18129:906..1374Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18129 907..1374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18129.2.1prot_P-wetherbeei_contig18129.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18129 907..1374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18129.2.1

>prot_P-wetherbeei_contig18129.2.1 ID=prot_P-wetherbeei_contig18129.2.1|Name=mRNA_P-wetherbeei_contig18129.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
GTTTSIFARELLKKRNLTVVTNSSDIARTLATVNGNRVYMAGGELNGSNG
AAFGPSAIAFAASFHVRHAIISIGALDADFGPSDSYLAEAEFARMVLSRG
ETRVILSDASKFGRIALIKVCDFKDINRLITDGIPDAKLAAVLQEAGVSV
NVVAR*
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mRNA from alignment at P-wetherbeei_contig18129:907..1374-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18129.2.1 ID=mRNA_P-wetherbeei_contig18129.2.1|Name=mRNA_P-wetherbeei_contig18129.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig18129:907..1374- (Phaeothamnion wetherbeei SAG_119_79)
GGCACCACCACCAGCATTTTCGCCCGCGAACTCCTGAAAAAACGCAATCT CACCGTTGTCACCAACTCGTCCGATATCGCCCGCACCCTGGCAACCGTGA ACGGCAACCGGGTTTATATGGCGGGCGGCGAACTGAATGGCTCCAATGGC GCGGCCTTTGGTCCCTCGGCCATCGCCTTTGCCGCAAGCTTCCATGTCCG CCATGCCATCATCTCCATCGGCGCATTGGATGCCGACTTCGGCCCTTCCG ACAGCTACCTCGCCGAAGCCGAATTTGCCCGCATGGTGCTGTCGCGCGGT GAAACGCGCGTGATACTGTCGGATGCCTCGAAATTCGGCCGCATCGCGCT GATCAAGGTCTGCGACTTCAAGGACATCAATCGCCTCATTACCGATGGCA TTCCCGATGCTAAGCTCGCCGCCGTGCTGCAGGAGGCTGGTGTCAGCGTG AATGTGGTGGCGCGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18129:907..1374-

>mRNA_P-wetherbeei_contig18129.2.1 ID=mRNA_P-wetherbeei_contig18129.2.1|Name=mRNA_P-wetherbeei_contig18129.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig18129:907..1374- (Phaeothamnion wetherbeei SAG_119_79)
GGCACCACCACCAGCATTTTCGCCCGCGAACTCCTGAAAAAACGCAATCT
CACCGTTGTCACCAACTCGTCCGATATCGCCCGCACCCTGGCAACCGTGA
ACGGCAACCGGGTTTATATGGCGGGCGGCGAACTGAATGGCTCCAATGGC
GCGGCCTTTGGTCCCTCGGCCATCGCCTTTGCCGCAAGCTTCCATGTCCG
CCATGCCATCATCTCCATCGGCGCATTGGATGCCGACTTCGGCCCTTCCG
ACAGCTACCTCGCCGAAGCCGAATTTGCCCGCATGGTGCTGTCGCGCGGT
GAAACGCGCGTGATACTGTCGGATGCCTCGAAATTCGGCCGCATCGCGCT
GATCAAGGTCTGCGACTTCAAGGACATCAATCGCCTCATTACCGATGGCA
TTCCCGATGCTAAGCTCGCCGCCGTGCTGCAGGAGGCTGGTGTCAGCGTG
AATGTGGTGGCGCGTTAA
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