mRNA_P-wetherbeei_contig18115.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18115.1.1
Unique NamemRNA_P-wetherbeei_contig18115.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A3N5EY10_9BURK (Heme-binding protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5EY10_9BURK)

HSP 1 Score: 145 bits (365), Expect = 3.710e-41
Identity = 90/145 (62.07%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    1 RGSGAKPSEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEVA 435
            R SG   SEKI MTAPV +E AA XXXXXXXXXX      D++SG     RW ++FTMP  Y++ATLP+P + AV LREVPG R+AVLVFSGFTGE+KV+  T ELL W+  K  R    PQLARY+PPW LPFMRRNEI+V VA
Sbjct:   59 RASG---SEKIEMTAPVGIE-AAXXXXXXXXXXXAERQGSDALSG---EGRWTIRFTMPASYTLATLPRPDDAAVVLREVPGGRHAVLVFSGFTGEDKVRTNTAELLAWMGTKGMRPAGPPQLARYDPPWQLPFMRRNEIVVPVA 196          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A258NDP8_9BURK (Uncharacterized protein n=4 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A258NDP8_9BURK)

HSP 1 Score: 144 bits (364), Expect = 9.850e-41
Identity = 82/151 (54.30%), Postives = 105/151 (69.54%), Query Frame = 1
Query:   13 AKPSEKIAMTAPVLVEPAA-----------RXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEV 432
            AK +EKIAMTAPV +EP +            XXXXXXXXX      G ++  +  ++ WRV F MP +Y++ATLP+P+NPAVTLREVP K +AVL +SGF  E  VQQ+TDEL+ WL A+  +   +PQLARYNPPWTLP  RRNEI++E+
Sbjct:   63 AKGAEKIAMTAPVALEPVSPPPPSTXXXXXXXXXXXXXXXPASAQAGQALPALQGAQSWRVHFVMPAQYTLATLPRPKNPAVTLREVPAKTWAVLSYSGFNTEAIVQQRTDELVAWLAAQQIKTRGSPQLARYNPPWTLPMFRRNEIMLEI 213          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: UPI0004976C52 (heme-binding protein n=1 Tax=Polaromonas glacialis TaxID=866564 RepID=UPI0004976C52)

HSP 1 Score: 144 bits (363), Expect = 1.950e-40
Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 1
Query:   16 KPSEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEVAA 438
            K SEKIAMTAPV  EP A XXXXXXXXXXXXXX     S M  + +WR+ F MP +YSM TLPKP N AV LR VP + +AVL +SGF    +VQ+KTDEL +W+K+KN +A++ PQLARY+PPWTLP  RRNEI +E+  
Sbjct:   91 KASEKIAMTAPVTAEPVAXXXXXXXXXXXXXXXXXXXXS-MASATQWRIHFVMPSQYSMQTLPKPNNEAVKLRAVPARTFAVLSYSGFNTASRVQEKTDELALWMKSKNLQAVSVPQLARYDPPWTLPMWRRNEIQMEIKT 230          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A2M8BS39_9BURK (Heme-binding protein n=2 Tax=unclassified Comamonadaceae TaxID=83494 RepID=A0A2M8BS39_9BURK)

HSP 1 Score: 142 bits (358), Expect = 6.510e-40
Identity = 82/144 (56.94%), Postives = 105/144 (72.92%), Query Frame = 1
Query:   22 SEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSG-------MMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEV 432
            SEKIAMTAPV +EP     XXXXXXXXXXXX   + S        +  + +WR+ F MP +Y++A+LPKP NPAVTLREVP K +AVL +SGF  E ++Q+KTDEL+ WL  +  +A+ +PQLARYNPPWTLP  RRNEI++E+
Sbjct:   66 SEKIAMTAPVTMEPLTNPSXXXXXXXXXXXXXXATQSANSTGLPALQGATQWRMHFVMPSQYTLASLPKPNNPAVTLREVPAKTWAVLRYSGFNTEARIQRKTDELVAWLAEQKIKALGSPQLARYNPPWTLPMFRRNEIMLEI 209          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: UPI000485F851 (heme-binding protein n=1 Tax=Dechloromonas agitata TaxID=73030 RepID=UPI000485F851)

HSP 1 Score: 141 bits (356), Expect = 1.460e-39
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   22 SEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEVA 435
            +E+IAMT PV+ EP  +  XXXXXXXXXXXX   + + M  ++RWR+ F MP +Y++ATLPKP NPA+ LRE+P + YAVL +SG      VQ++TD+LL WL+A+    I  PQLARYNPPWTLPF+RRNEI  E+ 
Sbjct:   75 NERIAMTVPVVAEPQDKAEXXXXXXXXXXXXXXAAATRMAGAQRWRIHFVMPSQYTLATLPKPLNPAIGLREIPARTYAVLTYSGSNTASTVQERTDQLLAWLQAQGIAPIGQPQLARYNPPWTLPFLRRNEIQQEIV 212          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: UPI001AEE7999 (heme-binding protein n=1 Tax=Thiothrix litoralis TaxID=2891210 RepID=UPI001AEE7999)

HSP 1 Score: 139 bits (351), Expect = 3.640e-39
Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 1
Query:   22 SEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILV 426
            +EKI+MTAPV +E ++ XXXXXXXXXXX        SG    ++WR+ F MPGEY++ATLPKP NPAVTLRE+P   YAV+ FSGF GEEK  +KT  LL WL++K  +    P+LARYNPPWTLPF+RRNE++V
Sbjct:   62 NEKISMTAPVTMEASSAXXXXXXXXXXX-------XSG----EQWRMHFVMPGEYTLATLPKPNNPAVTLREIPTSHYAVIRFSGFAGEEKTAKKTAALLAWLESKGIKPTGKPELARYNPPWTLPFLRRNEVMV 185          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A254Q1B2_9BURK (Heme-binding protein n=2 Tax=Polynucleobacter aenigmaticus TaxID=1743164 RepID=A0A254Q1B2_9BURK)

HSP 1 Score: 139 bits (351), Expect = 4.720e-39
Identity = 78/137 (56.93%), Postives = 98/137 (71.53%), Query Frame = 1
Query:   22 SEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEV 432
            SEKIAMTAPV +E   +   XXXXXXXXXXX G       +  +W V F MP EY++ TLPKP +  V +REVP +R AV+ FSGF  E+KVQ+KT  L  W+KA+N ++I  PQ ARYNPPWTLPFMRRNE++++V
Sbjct:   58 SEKIAMTAPVGIESGDQSKSXXXXXXXXXXXXGPKSQDKSNQNQWTVSFVMPAEYTLNTLPKPLDSQVKIREVPSERRAVITFSGFYNEDKVQEKTQALQDWIKARNMKSIGEPQFARYNPPWTLPFMRRNEVMIQV 194          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A7Y0BVZ9_9BURK (Heme-binding protein n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0BVZ9_9BURK)

HSP 1 Score: 140 bits (352), Expect = 4.950e-39
Identity = 86/146 (58.90%), Postives = 102/146 (69.86%), Query Frame = 1
Query:   16 KPSEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVS-------GMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEV 432
            K SEKIAMTAPV +EPA   XXXXXXXXXXXXX   +          M  +KRWRV F MP  Y++ TLPKP N AV LREVP K +AVL +SGF  E  +QQ+TDEL+ WL A+  +   +PQLARYNPPWTLP  RRNEI++E+
Sbjct:   64 KGSEKIAMTAPVTMEPANAAXXXXXXXXXXXXXXXXNAGQASQMPQAMQGAKRWRVHFVMPSTYTLNTLPKPNNLAVQLREVPAKTWAVLSYSGFNTEAGIQQRTDELVAWLAAQKIKTTGSPQLARYNPPWTLPMFRRNEIMLEI 209          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A1G8V9X4_9GAMM (SOUL heme-binding protein n=1 Tax=Microbulbifer yueqingensis TaxID=658219 RepID=A0A1G8V9X4_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 6.270e-39
Identity = 81/135 (60.00%), Postives = 96/135 (71.11%), Query Frame = 1
Query:   22 SEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILV 426
            +EKI MTAPV VEP + XXXXXXXXX       +   G     +WRV F MPG Y+M T+P+P NPAV LRE+P   YAV+ FSGFTGEEKV +KT EL+ W+K K    I  P+LARYNPPWTLPF+RRNEI+V
Sbjct:   80 NEKIEMTAPVGVEPRSXXXXXXXXXXM------ERTGG-----QWRVWFVMPGRYTMDTIPRPNNPAVKLREIPATTYAVIRFSGFTGEEKVAKKTAELVAWMKEKGLAPIGKPELARYNPPWTLPFLRRNEIMV 203          
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Match: A0A3B9L5L9_9PROT (Heme-binding protein n=1 Tax=Methylophilaceae bacterium TaxID=2030816 RepID=A0A3B9L5L9_9PROT)

HSP 1 Score: 139 bits (349), Expect = 9.730e-39
Identity = 80/140 (57.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    7 SGAKPSEKIAMTAPVLVEPAARXXXXXXXXXXXXXXQGDSVSGMMHSKRWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQQKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILV 426
            SG K  EKI+MTAPV + P A+      XXXXXXXX          + +WR+ F MP +Y+++TLP P NPAVTLRE+P  R AVL FSGF GEEK  +KT ELL WL +KN   I  P+LARYNPPWTLPF+RRNE++V
Sbjct:   59 SGGK--EKISMTAPVTMAPRAQQDQAESXXXXXXXXXXXXXX-QQSAGQWRMYFVMPSQYTLSTLPTPNNPAVTLRELPASRVAVLRFSGFAGEEKTAKKTAELLAWLNSKNITPIGEPELARYNPPWTLPFLRRNEVMV 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5EY10_9BURK3.710e-4162.07Heme-binding protein n=1 Tax=Burkholderiales bacte... [more]
A0A258NDP8_9BURK9.850e-4154.30Uncharacterized protein n=4 Tax=unclassified Acido... [more]
UPI0004976C521.950e-4060.99heme-binding protein n=1 Tax=Polaromonas glacialis... [more]
A0A2M8BS39_9BURK6.510e-4056.94Heme-binding protein n=2 Tax=unclassified Comamona... [more]
UPI000485F8511.460e-3956.52heme-binding protein n=1 Tax=Dechloromonas agitata... [more]
UPI001AEE79993.640e-3960.00heme-binding protein n=1 Tax=Thiothrix litoralis T... [more]
A0A254Q1B2_9BURK4.720e-3956.93Heme-binding protein n=2 Tax=Polynucleobacter aeni... [more]
A0A7Y0BVZ9_9BURK4.950e-3958.90Heme-binding protein n=1 Tax=Polaromonas sp. TaxID... [more]
A0A1G8V9X4_9GAMM6.270e-3960.00SOUL heme-binding protein n=1 Tax=Microbulbifer yu... [more]
A0A3B9L5L9_9PROT9.730e-3957.14Heme-binding protein n=1 Tax=Methylophilaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18115contigP-wetherbeei_contig18115:1..444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1304883.KI912532_gene2247
PFAMsSOUL
Model size444
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.39e-40
EggNOG OGsCOG3449@1|root,COG3449@2|Bacteria,1RF2U@1224|Proteobacteria,2VST9@28216|Betaproteobacteria
DescriptionSOUL heme-binding protein
Cds size444
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.460844-CDS-P-wetherbeei_contig18115:0..4441683186136.460844-CDS-P-wetherbeei_contig18115:0..444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18115 1..444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18115.1.1prot_P-wetherbeei_contig18115.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18115 1..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18115.1.1

>prot_P-wetherbeei_contig18115.1.1 ID=prot_P-wetherbeei_contig18115.1.1|Name=mRNA_P-wetherbeei_contig18115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
RGSGAKPSEKIAMTAPVLVEPAARSEKIAMNAPVSVEPQGDSVSGMMHSK
RWRVQFTMPGEYSMATLPKPRNPAVTLREVPGKRYAVLVFSGFTGEEKVQ
QKTDELLVWLKAKNRRAIATPQLARYNPPWTLPFMRRNEILVEVAAQ*
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mRNA from alignment at P-wetherbeei_contig18115:1..444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18115.1.1 ID=mRNA_P-wetherbeei_contig18115.1.1|Name=mRNA_P-wetherbeei_contig18115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig18115:1..444+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGGTCCGGGGCCAAGCCATCTGAAAAAATTGCCATGACTGCGCCGGT ATTGGTCGAACCCGCGGCACGTTCGGAAAAGATAGCCATGAATGCCCCTG TGAGCGTCGAACCCCAGGGTGATTCCGTGAGTGGGATGATGCATAGCAAG CGCTGGCGTGTCCAGTTTACGATGCCCGGCGAGTATTCGATGGCAACCTT GCCAAAACCGCGGAATCCGGCAGTCACGCTAAGAGAGGTGCCGGGCAAAC GCTACGCAGTTCTGGTCTTTTCGGGGTTCACTGGTGAAGAGAAGGTGCAG CAAAAGACCGACGAACTCCTGGTTTGGCTCAAGGCTAAAAACAGGAGAGC CATCGCCACGCCGCAACTGGCGCGCTACAACCCGCCCTGGACACTGCCAT TCATGCGGCGGAACGAAATTCTGGTGGAAGTAGCCGCGCAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18115:1..444+

>mRNA_P-wetherbeei_contig18115.1.1 ID=mRNA_P-wetherbeei_contig18115.1.1|Name=mRNA_P-wetherbeei_contig18115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig18115:1..444+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGGTCCGGGGCCAAGCCATCTGAAAAAATTGCCATGACTGCGCCGGT
ATTGGTCGAACCCGCGGCACGTTCGGAAAAGATAGCCATGAATGCCCCTG
TGAGCGTCGAACCCCAGGGTGATTCCGTGAGTGGGATGATGCATAGCAAG
CGCTGGCGTGTCCAGTTTACGATGCCCGGCGAGTATTCGATGGCAACCTT
GCCAAAACCGCGGAATCCGGCAGTCACGCTAAGAGAGGTGCCGGGCAAAC
GCTACGCAGTTCTGGTCTTTTCGGGGTTCACTGGTGAAGAGAAGGTGCAG
CAAAAGACCGACGAACTCCTGGTTTGGCTCAAGGCTAAAAACAGGAGAGC
CATCGCCACGCCGCAACTGGCGCGCTACAACCCGCCCTGGACACTGCCAT
TCATGCGGCGGAACGAAATTCTGGTGGAAGTAGCCGCGCAGTAA
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