mRNA_P-wetherbeei_contig18048.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI002011F7D8 (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0160 TaxID=2807662 RepID=UPI002011F7D8) HSP 1 Score: 227 bits (578), Expect = 2.710e-74 Identity = 115/137 (83.94%), Postives = 124/137 (90.51%), Query Frame = 1
Query: 34 RLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
RL AA I++ LA PARA VVVQIDKSSQRMAVS+DGATRYSWPVSTGR+GYGTPSGVF+PQSMHR YFSRKYYNSPMP+AIFF+YGFAIHGT DI RLGG ASHGCVRLHPSHAAALFALVQR+G RNTRI+IN
Sbjct: 4 RLPFAAAILISALASSPARAAVVVQIDKSSQRMAVSIDGATRYSWPVSTGRSGYGTPSGVFRPQSMHRHYFSRKYYNSPMPHAIFFHYGFAIHGTTDIKRLGGRASHGCVRLHPSHAAALFALVQRNGQRNTRIQIN 140
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA46D2F (L,D-transpeptidase n=9 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA46D2F) HSP 1 Score: 224 bits (571), Expect = 3.610e-73 Identity = 115/144 (79.86%), Postives = 124/144 (86.11%), Query Frame = 1
Query: 13 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
MK G RL A I M LAL PARA VVVQIDKSSQRMAVS+DGATRYSWPVSTGR+GYGTPSGVF+PQ M R Y+SRKYYNSPMP+AIFF++GFAIHGT DI RLGG ASHGCVRLHPSHAAALFAL+QRSG RNTRI+IN
Sbjct: 1 MKFRLGVRLSFVAAIFMSALALSPARAAVVVQIDKSSQRMAVSIDGATRYSWPVSTGRSGYGTPSGVFRPQWMSRHYYSRKYYNSPMPHAIFFHHGFAIHGTTDIRRLGGRASHGCVRLHPSHAAALFALIQRSGQRNTRIQIN 144
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001FEE1024 (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI001FEE1024) HSP 1 Score: 223 bits (567), Expect = 1.130e-72 Identity = 108/133 (81.20%), Postives = 123/133 (92.48%), Query Frame = 1
Query: 46 AAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
+ V+++ GLAL PARA+VVVQIDKS+QRMAVSVDG+ RY+WPVSTGR+GYGTP+G F PQSM RRYFSRKYYN+PMP+AIFFYYGFAIHGTNDI +LGG ASHGCVRLHPSHAAALFALV+ SGPRNTRIEI+
Sbjct: 3 SVVVLLSGLALTPARAEVVVQIDKSAQRMAVSVDGSMRYNWPVSTGRDGYGTPNGTFHPQSMARRYFSRKYYNAPMPHAIFFYYGFAIHGTNDISQLGGPASHGCVRLHPSHAAALFALVEHSGPRNTRIEIS 135
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A525JG63_BRASZ (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JG63_BRASZ) HSP 1 Score: 223 bits (569), Expect = 1.240e-72 Identity = 115/151 (76.16%), Postives = 129/151 (85.43%), Query Frame = 1
Query: 1 QGIIMKLLFG---SRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
+G IM L G +RL A+ +++ GLAL P RA+VVVQIDKSSQRMAVSVDG RY+WPVSTGR+GYGTPSG F PQSM R YFSRKYYN+PMP+AIFFYYGFAIHGTNDI RLGG ASHGCVRLHPSHAAALFALV+R+G RNTRIEI+
Sbjct: 9 RGTIMNWLSGMGLARLAFASFVMVSGLALTPVRAEVVVQIDKSSQRMAVSVDGEMRYNWPVSTGRDGYGTPSGTFHPQSMARHYFSRKYYNAPMPHAIFFYYGFAIHGTNDISRLGGPASHGCVRLHPSHAAALFALVERNGSRNTRIEIS 159
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001C0142C1 (L,D-transpeptidase n=4 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C0142C1) HSP 1 Score: 212 bits (540), Expect = 1.470e-68 Identity = 103/121 (85.12%), Postives = 113/121 (93.39%), Query Frame = 1
Query: 82 PARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
PARA VVVQIDKSSQRMAVSVDG TRYSWPVSTGRNGYGTPSGVF PQ M RR++SR+YYNSPMP++IFFY+GFAIHGT ++ RLGG ASHGCVRLHPSHAAALFALV+RSGPRNTRIEI+
Sbjct: 3 PARAGVVVQIDKSSQRMAVSVDGMTRYSWPVSTGRNGYGTPSGVFHPQMMARRWYSRRYYNSPMPHSIFFYHGFAIHGTTELARLGGPASHGCVRLHPSHAAALFALVERSGPRNTRIEIS 123
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A1M6SM70_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6SM70_9BRAD) HSP 1 Score: 210 bits (534), Expect = 1.780e-67 Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 1
Query: 31 SRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
+RL+ AA +VM GLA PARADVVVQIDKS+QRMA+SVDG R++WPVSTGR+GYGTPSG F PQ M RR+FSRKYYNSPMP+AIFFY GFAIHGT ++ RLGG ASHGCVRL PSHAA LFALV R+GPRNTRIEI+
Sbjct: 10 ARLVFAAAVVMAGLAWSPARADVVVQIDKSAQRMAMSVDGMMRHNWPVSTGRSGYGTPSGTFHPQLMARRWFSRKYYNSPMPHAIFFYGGFAIHGTYELTRLGGPASHGCVRLDPSHAATLFALVGRNGPRNTRIEIS 147
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA77972 (L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA77972) HSP 1 Score: 209 bits (533), Expect = 2.790e-67 Identity = 105/140 (75.00%), Postives = 119/140 (85.00%), Query Frame = 1
Query: 31 SRLILAAVI---VMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 441
SR +L A++ V+ G A P RADV VQIDKSSQRMAVSVDG+ RY+WPVSTGR+GYGTP+G F PQ+M RR+FSRKYYNSPMP+AIFFYYGFAIHGT+DI RLGG ASHGCVRLHP+HAA LFALV R GPRNT I+I
Sbjct: 10 SRAVLGAILGACVLAGFAATPVRADVRVQIDKSSQRMAVSVDGSPRYNWPVSTGRSGYGTPNGTFHPQAMMRRHFSRKYYNSPMPHAIFFYYGFAIHGTSDISRLGGPASHGCVRLHPAHAATLFALVSREGPRNTTIQI 149
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI00112B339F (L,D-transpeptidase n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI00112B339F) HSP 1 Score: 209 bits (531), Expect = 4.940e-67 Identity = 103/128 (80.47%), Postives = 111/128 (86.72%), Query Frame = 1
Query: 58 VMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 441
V+ GLA ARADV VQIDKSSQRMAVSVDG+ RY WPVSTGR+GYGTP+G F PQ+M RRYFSRKYYNSPMP+AIFFYYGFAIHGT DI RLGG ASHGCVRLHP+HAA LFALV R GPRNT I+I
Sbjct: 18 VLAGLAATSARADVRVQIDKSSQRMAVSVDGSPRYDWPVSTGRSGYGTPNGTFHPQAMMRRYFSRKYYNSPMPHAIFFYYGFAIHGTTDISRLGGPASHGCVRLHPAHAATLFALVSREGPRNTTIQI 145
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A1H0G5S5_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0G5S5_9BRAD) HSP 1 Score: 206 bits (523), Expect = 6.930e-66 Identity = 108/144 (75.00%), Postives = 118/144 (81.94%), Query Frame = 1
Query: 13 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
MK +G LI A +V+ A PA ADVVVQIDKSSQRMAVSVDG RY+WPVSTG GYGTPSGVF PQSM R +FSRKYYNSPMP++IF YYGFAIHGTNDI RLGG ASHGCVRLHPSHAAAL+ LVQR+G +TRIEIN
Sbjct: 1 MKFAWGKALIAAVAMVVSSWA--PASADVVVQIDKSSQRMAVSVDGVPRYNWPVSTGGGGYGTPSGVFHPQSMARMHFSRKYYNSPMPHSIFSYYGFAIHGTNDIARLGGPASHGCVRLHPSHAAALYGLVQRNGAGSTRIEIN 142
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA7DCAA (L,D-transpeptidase n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA7DCAA) HSP 1 Score: 205 bits (522), Expect = 9.850e-66 Identity = 106/143 (74.13%), Postives = 118/143 (82.52%), Query Frame = 1
Query: 13 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 441
MKLL G RL LAA + L PA A VVVQI KSSQRM+VSVDGA RYSWPVSTGR GYGTPSG F PQ M RR++S+KYYNSPMP++IFFYYG+AIHGT D+GRLGG ASHGCVRLHPSHAA L+ALV+R+G NTRIEI
Sbjct: 1 MKLLSGVRLALAAAFI--SLLAAPAHAGVVVQISKSSQRMSVSVDGAPRYSWPVSTGRRGYGTPSGTFHPQMMARRWYSKKYYNSPMPHSIFFYYGYAIHGTTDLGRLGGPASHGCVRLHPSHAATLYALVERNGRGNTRIEI 141 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18048.1.1 >prot_P-wetherbeei_contig18048.1.1 ID=prot_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYback to top mRNA from alignment at P-wetherbeei_contig18048:267..713+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18048.1.1 ID=mRNA_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig18048:267..713+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18048:267..713+ >mRNA_P-wetherbeei_contig18048.1.1 ID=mRNA_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig18048:267..713+ (Phaeothamnion wetherbeei SAG_119_79)back to top |