mRNA_P-wetherbeei_contig18028.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18028.1.1
Unique NamemRNA_P-wetherbeei_contig18028.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: B8BRN2_THAPS (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRN2_THAPS)

HSP 1 Score: 109 bits (272), Expect = 1.320e-25
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F  FGAV V+P+NFYRLL+    VLLFPGG +EALHGKGE Y+VFWP+ + DFVR A   NATI+P SAIG AD
Sbjct:  638 FSMFGAVKVTPKNFYRLLQTNQAVLLFPGGVKEALHGKGEDYEVFWPDKKTDFVRVAARFNATIVPISAIGAAD 711          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A7S3Q0K0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0K0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.320e-25
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F  FGAV V+PRN+YRL++ G   LLFPGG RE  HGK EAY++FWPED+ DFVRTA   NATI+P SA+G AD
Sbjct:  541 FEQFGAVMVTPRNYYRLMQTGQTGLLFPGGVREVFHGKDEAYELFWPEDKLDFVRTASRFNATIVPISAVGAAD 614          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A7S2HWL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HWL6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.480e-25
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F AFGAV  +P NFYRL++    VL FPGGAREA HGK EAYQ+FWPE+  DF+R+A   NATI+P SAIG AD
Sbjct:   32 FRAFGAVEANPMNFYRLMQTRQTVLHFPGGAREAYHGKNEAYQLFWPENM-DFIRSAAKFNATIVPISAIGAAD 104          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: D7G6D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D6_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.310e-24
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  103 GAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            GAVPV+PRN  RL + G+ +LL+PGGA+EALH KG+ YQ+FWPE + +FVR A + NATI+PF+A+G AD
Sbjct:    5 GAVPVTPRNMLRLFKAGESMLLYPGGAKEALHQKGQDYQLFWPE-KGEFVRMAASFNATIVPFAAVGSAD 73          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.560e-24
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F  FGAVPVSPRN YRLL+RGD VLLFPGG  EA H KGE Y++FWPE + +FVR AVA +A I+PFSAIG AD
Sbjct:  614 FTKFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYKLFWPE-KAEFVRLAVASDAIIVPFSAIGVAD 686          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A7S2DM45_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DM45_9DINO)

HSP 1 Score: 95.9 bits (237), Expect = 2.020e-23
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F  FGAVPV+PRN ++LL++G+  LLFPGG +EALHG GE YQV WPE + DFVR A    A ++PF  +G  D
Sbjct:   15 FETFGAVPVTPRNIFKLLQKGEMTLLFPGGMKEALHGPGEEYQVMWPE-QTDFVRVAARFGAVVVPFGGVGADD 87          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A7S2K9L3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K9L3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.710e-23
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F  FGAV V+P+N+YRL++ G   LLFPGG RE  HGK EAYQ+ WPE + DFVRTA   NATIIP SA+G AD
Sbjct:  313 FETFGAVRVTPKNYYRLMQTGQAALLFPGGVREVFHGKNEAYQLMWPE-KTDFVRTAAKFNATIIPLSAVGAAD 385          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A1E7FBB4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBB4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.640e-23
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   85 EEFMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            + F  FGAV V+P+NFYRL++ G   LLFPGG RE  HGK E+YQ+FWPE + DFVRTA   NATI+P SA+G AD
Sbjct:  430 QNFEKFGAVMVTPKNFYRLMQTGQNALLFPGGVREVFHGKNESYQLFWPE-KVDFVRTAARFNATIVPVSAVGMAD 504          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A7S1BH14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BH14_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.730e-23
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   91 FMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            F  FGAV V+PRN+YRL++ G   LLFPGG RE  HGK EAY++FWPE + DFVR A   NATIIP SA+G AD
Sbjct:  468 FQKFGAVEVTPRNYYRLMQTGQAALLFPGGVREVFHGKDEAYKLFWPE-KTDFVRIAAKFNATIIPVSAVGAAD 540          
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Match: A0A448YUI4_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUI4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.800e-23
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   85 EEFMAFGAVPVSPRNFYRLLRRGDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAIGGAD 312
            + F  FGAV V+PRNFYRL++ G   LLFPGG RE  HG+ E+YQ+FWP D+ DFVRTA   NATI+P SA+G AD
Sbjct:  540 QNFEEFGAVMVTPRNFYRLMQTGQNALLFPGGVREVFHGRDESYQLFWP-DKVDFVRTAARFNATIVPVSAVGMAD 614          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18028.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8BRN2_THAPS1.320e-2566.22AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
A0A7S3Q0K0_9STRA3.320e-2564.86Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2HWL6_9STRA3.480e-2564.86Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
D7G6D6_ECTSI1.310e-2461.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4M7_ECTSI1.560e-2470.27AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S2DM45_9DINO2.020e-2356.76Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2K9L3_9STRA2.710e-2363.51Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1E7FBB4_9STRA4.640e-2361.84Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S1BH14_9STRA4.730e-2363.51Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A448YUI4_9STRA4.800e-2361.84AB hydrolase-1 domain-containing protein n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18028contigP-wetherbeei_contig18028:426..964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps20950
Model size312
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.16e-26
EggNOG OGsCOG0204@1|root,2QQUD@2759|Eukaryota,2XC8C@2836|Bacillariophyta
Descriptionfatty alcohol metabolic process
Cds size312
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.9565825-CDS-P-wetherbeei_contig18028:425..5181683186133.9565825-CDS-P-wetherbeei_contig18028:425..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18028 426..518 -
1683186133.9650366-CDS-P-wetherbeei_contig18028:745..9641683186133.9650366-CDS-P-wetherbeei_contig18028:745..964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18028 746..964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18028.1.1prot_P-wetherbeei_contig18028.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18028 426..964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18028.1.1

>prot_P-wetherbeei_contig18028.1.1 ID=prot_P-wetherbeei_contig18028.1.1|Name=mRNA_P-wetherbeei_contig18028.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MTPGGGGGGGFGAGGLGGGGGHGGGGIGEEFMAFGAVPVSPRNFYRLLRR
GDPVLLFPGGAREALHGKGEAYQVFWPEDRRDFVRTAVALNATIIPFSAI
GGAD
back to top

mRNA from alignment at P-wetherbeei_contig18028:426..964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18028.1.1 ID=mRNA_P-wetherbeei_contig18028.1.1|Name=mRNA_P-wetherbeei_contig18028.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=539bp|location=Sequence derived from alignment at P-wetherbeei_contig18028:426..964- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACCCGGCGGCGGCGGCGGCGGCGGGTTTGGCGCCGGCGGCCTTGG TGGAGGCGGTGGCCATGGCGGTGGCGGGATTGGAGAGGAGTTTATGGCAT TCGGAGCGGTGCCAGTGAGCCCGCGAAATTTTTACCGGCTGCTGCGGCGC GGCGACCCGGTGCTGCTTTTCCCGGGCGGCGCGCGAGAGGCGCTCCATGG CAAAGGCGAGGCATACCAGGTAAGCGAGATGTCGATTGTGTGCAAGATCT CGTATCACAAGACGTCAAAGCATGTCTCTTTCAGCTCTGAAGCAGTGCTT CTATGTGGCTCTACCAACGATTGACCGCGACCTGGTTTTTGGAGTTCGTA GTCTACGCCGATATCTGGAGTTAACATCGGTTTGCGAGCGAGTACCACTC TGATCGACTTCTTTTTGAGTGACACCTTTCTGCTTTTCGTTGCCAGGTCT TCTGGCCGGAGGACCGCCGCGACTTTGTGCGTACGGCGGTCGCCCTCAAC GCCACCATAATCCCGTTCAGCGCCATCGGCGGTGCTGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18028:426..964-

>mRNA_P-wetherbeei_contig18028.1.1 ID=mRNA_P-wetherbeei_contig18028.1.1|Name=mRNA_P-wetherbeei_contig18028.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig18028:426..964- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACCCGGCGGCGGCGGCGGCGGCGGGTTTGGCGCCGGCGGCCTTGG
TGGAGGCGGTGGCCATGGCGGTGGCGGGATTGGAGAGGAGTTTATGGCAT
TCGGAGCGGTGCCAGTGAGCCCGCGAAATTTTTACCGGCTGCTGCGGCGC
GGCGACCCGGTGCTGCTTTTCCCGGGCGGCGCGCGAGAGGCGCTCCATGG
CAAAGGCGAGGCATACCAGGTCTTCTGGCCGGAGGACCGCCGCGACTTTG
TGCGTACGGCGGTCGCCCTCAACGCCACCATAATCCCGTTCAGCGCCATC
GGCGGTGCTGAC
back to top