mRNA_P-wetherbeei_contig1783.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1783.1.1
Unique NamemRNA_P-wetherbeei_contig1783.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1783.1.1 vs. uniprot
Match: D7FW95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW95_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.650e-26
Identity = 130/391 (33.25%), Postives = 169/391 (43.22%), Query Frame = 1
Query:    1 IFRGSDVATELTSLASAVTGAASRALAEAAAAGDRXXXXXXXXXXXAIDKPLGRGGYTPLMRAASFGHRKVAKLLISEGADLFVRDRHGRTALDWARACGRDGATRLLERTMENDVRAHRTEFLLRRRRDSEA-AVASVVDRLRRDLRAALEAQDLAAVLAVIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGDSCSVAPCSGGGILTSDNAAGAPGNLFINASPAVPAA---PXXXXXXXXXXXAASTDPPAACP-------FVDVETDSGVTALILAVFRDDGDAAARLLAAGADAAVVTRRGHTALTWAAVCGH-AVAAQALVGTPL-----------------GEAADPGQAVGR----ERRTALHYAAASGSAGVALALLD 1074
            +F G D+A ++  L   V   A + L  AAAAG              +D  L    +TPLMRAA++GH      LI+EGAD+F  DR GRTALDW+R   RD A R+LER MEN++R +R E     R D E  AV     R  R++  A+ A+DL  V  ++D                               + G S   AP S     T + A        ++  P  P A   P              T+P            F+D E   G TAL LA   +D +   RL+  GAD  V    GHTAL+WAAVCG   VAA+ L+G                    G   D   AV R    E +TALH AA +G++GV + LLD
Sbjct:   23 LFSGPDIAGQVEELEKRVAQQACKDLTLAAAAGKTSDVVRSIELGGDVDTTLNT--FTPLMRAATWGHVDTLATLIAEGADMFATDRQGRTALDWSRIARRDKAARILERAMENEIR-YRREATKAVRGDKELWAVIEANARHAREVAHAVNARDLKEVKRIVDRAQLTRDKFVSVCDRLGFRRREEANERARESSCGGS-GEAPAS-----TVEQA--------LSVCPTPPTAAEKPSVAALATPWTAEDGTEPNDGSLLRRIPVFFLDAEGRGGTTALALATIENDAETVRRLMKEGADPGVEASSGHTALSWAAVCGFDLVAAELLLGNNTNKRXXXXXXXXXXSSRSGPMQDAINAVTRSTLVEGKTALHNAAFNGNSGVVVLLLD 396          
BLAST of mRNA_P-wetherbeei_contig1783.1.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 4.650e-25
Identity = 114/327 (34.86%), Postives = 149/327 (45.57%), Query Frame = 1
Query:  169 YTPLMRAASFGHRKVAKLLISEGADLFVRDRHGRTALDWARACGRDGATRLLERTMENDVRAHRTEFLLRRRRDSEA-AVASVVDRLRRDLRAALEAQDLAAVLAVIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGDSCSVAPCSGGGILTSDNAAGAPGNLFINASPAVPAAPXXXXXXXXXXXAASTDPPAACP--FVDVETDSGVTALILAVFRDDGDAAARLLAAGADAAVVTRRGHTALTWAAVCGH-AVAAQALVGTPL-----------------GEAADPGQAVGR----ERRTALHYAAASGSAGVALALLD 1074
            +TPLMRAA++GH      LI+EGAD+F  DR GRTALDW+R   RD A R+LER MEN++R +R E     R D E  AV     R  R++  A+  +DL  V  ++D                               + GDS   AP S    + + +    P     + S A  A P            +        P  F+D E   G TAL LA   DD +   RL+  GAD  V    GHTAL+WAAVCG   VAA+ L+G+                   G   D  +AV R    E +TALH AA +G++GV + LLD
Sbjct:   46 FTPLMRAATWGHVDTLATLIAEGADMFTTDRQGRTALDWSRIARRDKAARILERAMENEIR-YRREATKAVRCDKELWAVIEANARHAREVAHAVNTRDLKEVKRIVDRAQLTRDKFVSVCDRLGFRRREEANERARESSCGDSVE-APAS---TVEALSVRPTPPTAAEDPSVAALATPWTAEDGTKTNDGSLL---RGIPVFFLDAEGRGGTTALALATIEDDAETVRRLMKEGADPGVEASSGHTALSWAAVCGFDLVAAELLLGSNTNKRSLSSSSSISGSSRSGPMQDAIKAVTRSTVVEGKTALHNAAFNGNSGVVVLLLD 364          
BLAST of mRNA_P-wetherbeei_contig1783.1.1 vs. uniprot
Match: A0A3R6XU77_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XU77_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.290e-6
Identity = 84/310 (27.10%), Postives = 126/310 (40.65%), Query Frame = 1
Query:  166 GYTPLMRAASFG-----HRKVAKLLISEGADLFVRDRHGRTALDWARACGRDGATRLLERTMENDVRAHRTEFLLRRRRDSEAAVASVVDRLRRDLRAALEAQDLAAVLAVIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGDSCSVAPCSGGGILTSDNAAGAPGNLFINASPAVPAAPXXXXXXXXXXXAASTDPPAACPFVDVETDSGVTALILAVFRDDGDAAARLLAAGADAAVVTRRGHTALTWAAVCGHAVAAQALVGTPLGEAADPGQAVGRERRTALHYAAASGS---AGVALALL 1071
            GYTPLM+AA+       +  +   L+   AD+F RDR G+TAL+WAR     GA+R LE  ++  + A R       R    A V     +L +D++ A+ A ++  + A+I                                A  D            +T+D        +F  A+ +                        +  F+DVET +G +AL  A    D      L+  GAD  + T+  HTALTWAA CGH    Q L+     + AD  Q    E +TAL +A+ +G     G+ +A+L
Sbjct:  432 GYTPLMKAAAMTVLDGTNEGLVLALLRHDADVFARDRKGKTALEWARLTNNTGASRHLEMAIQAHIYASRIADADENRVTKHAHVLERHAQLCKDMQTAVAANNVVQIRALIQQ------------------------------ATDDG-----------MTAD--------VFREAATS-----------------------HSRYFLDVETSAGWSALTKAASVGDLPTIELLVQHGADVNLETKLRHTALTWAAYCGHKDVVQFLLQN---QRADWRQGTS-EGKTALIHASRNGQHVVVGILVAIL 665          
BLAST of mRNA_P-wetherbeei_contig1783.1.1 vs. uniprot
Match: A0A8J2SAI7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAI7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.390e-5
Identity = 76/305 (24.92%), Postives = 112/305 (36.72%), Query Frame = 1
Query:  169 YTPLMRAASFGHRKVAKLLISEGADL---FVRDRHGRTALDWARACGRDGATRLLERTMENDVRAHRTEFLLRRRRDSEAAVASVVDRLRRDLRAALEAQDLAAVLAVIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGDSCSVAPCSGGGILTSDNAAGAPGNLFINASPAVPAAPXXXXXXXXXXXAASTDPPAACPFVDVETDSGVTALILAVFRDDGDAAARLLAAGADAAVVTRRGHTALTWAAVCGHAVAAQALVGTPLGEAADPGQAVGRERRTALHYAAASGSAGVALALLD 1074
            +T LM+AA+ G +   + L+++   L   F  DR GR AL+WAR    DG   L++  M  +VR    +   + R      +     R+R  +  A+  +D+  +   +D                                               + +DN+                                  DP     +VDVET +G TAL +A   +  + A +LL  GA      +RGHTAL+WA VCG    A  +V   L   ADP +    E R  L +AA  G A     LLD
Sbjct:   78 FTDLMKAAAVGRQSEVEYLLTQPETLLTLFATDRSGRNALEWARQKKFDGCASLIQEAMSREVRVRAEDREAQERIFDLKRIVRTNGRIRAVVEHAINERDIVTISNCVDGADFDRQEYVRACNLLQGYMNRHSDET--------------------MITDNSQ------------------------------EEFDPDPEAYYVDVETLAG-TALFVACAENQVELADKLLTLGAVVDFENQRGHTALSWACVCG----ADKVVELLLTHGADPKRKSKLEERVPLAHAAQHGHARCCQILLD 327          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FW95_ECTSI1.650e-2633.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H6_9PHAE4.650e-2534.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3R6XU77_9STRA3.290e-627.10Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A8J2SAI7_9STRA2.390e-524.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1783contigP-wetherbeei_contig1783:138..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008864380.1
Preferred nameWDR34
PFAMsAnk_2,WD40
Model size1074
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0031503,GO:0032838,GO:0032991,GO:0035735,GO:0036064,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045504,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
Exons1
Evalue0.000115
EggNOG OGsCOG0666@1|root,KOG0297@1|root,KOG1587@1|root,KOG0297@2759|Eukaryota,KOG0504@2759|Eukaryota,KOG1587@2759|Eukaryota
Descriptiondynein heavy chain binding
Cds size1074
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.4087956-CDS-P-wetherbeei_contig1783:137..12111683186128.4087956-CDS-P-wetherbeei_contig1783:137..1211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1783 138..1211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1783.1.1prot_P-wetherbeei_contig1783.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1783 138..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1783.1.1

>prot_P-wetherbeei_contig1783.1.1 ID=prot_P-wetherbeei_contig1783.1.1|Name=mRNA_P-wetherbeei_contig1783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
IFRGSDVATELTSLASAVTGAASRALAEAAAAGDRLAAGAALDDGAAIDK
PLGRGGYTPLMRAASFGHRKVAKLLISEGADLFVRDRHGRTALDWARACG
RDGATRLLERTMENDVRAHRTEFLLRRRRDSEAAVASVVDRLRRDLRAAL
EAQDLAAVLAVIDDAAAAGQLPPPKRRRRAATATTAPAATATAAAVGDSC
SVAPCSGGGILTSDNAAGAPGNLFINASPAVPAAPAPAAAAAATVAAAST
DPPAACPFVDVETDSGVTALILAVFRDDGDAAARLLAAGADAAVVTRRGH
TALTWAAVCGHAVAAQALVGTPLGEAADPGQAVGRERRTALHYAAASGSA
GVALALLD
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mRNA from alignment at P-wetherbeei_contig1783:138..1211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1783.1.1 ID=mRNA_P-wetherbeei_contig1783.1.1|Name=mRNA_P-wetherbeei_contig1783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig1783:138..1211- (Phaeothamnion wetherbeei SAG_119_79)
ATCTTTCGCGGCTCGGATGTTGCGACCGAGCTCACGTCCCTCGCGTCGGC AGTCACGGGAGCCGCCTCCCGCGCCCTCGCCGAAGCAGCCGCCGCCGGCG ACCGTCTCGCCGCCGGCGCCGCCCTGGACGACGGCGCCGCCATCGACAAG CCGCTGGGCCGCGGCGGCTACACCCCGTTGATGCGTGCCGCCAGCTTCGG CCACCGCAAGGTCGCCAAGCTCCTAATCTCCGAGGGGGCCGACCTTTTCG TTCGCGACCGGCACGGCCGGACTGCGCTCGACTGGGCGCGCGCGTGCGGC CGTGATGGCGCCACTCGGCTGCTGGAGCGCACCATGGAGAACGACGTTCG CGCCCACCGCACCGAGTTCCTGCTGCGACGGCGGCGGGACAGCGAGGCGG CGGTGGCATCGGTCGTCGATCGGCTCCGGCGGGATCTGCGCGCCGCGCTG GAAGCGCAGGACCTGGCGGCGGTGCTGGCAGTGATCGATGACGCGGCGGC GGCCGGCCAGCTGCCACCGCCGAAGCGCCGCCGCCGTGCCGCCACGGCCA CCACCGCCCCCGCTGCTACTGCCACCGCTGCGGCCGTCGGCGATTCCTGT TCCGTTGCCCCATGTTCCGGTGGTGGAATACTCACATCTGACAATGCAGC AGGAGCACCAGGGAATCTGTTCATAAATGCCTCGCCGGCGGTTCCAGCGG CTCCAGCCCCCGCCGCTGCTGCCGCTGCCACCGTTGCCGCTGCCAGCACT GACCCGCCCGCCGCCTGCCCCTTCGTTGACGTGGAAACCGACAGCGGCGT CACTGCGCTCATCCTTGCAGTCTTTCGGGACGACGGCGACGCCGCGGCCC GGCTGCTGGCGGCGGGAGCCGACGCCGCTGTGGTCACCCGCCGCGGCCAC ACGGCGCTGACGTGGGCCGCCGTCTGCGGGCACGCGGTGGCGGCGCAGGC GCTGGTCGGCACGCCACTGGGAGAGGCGGCCGATCCAGGGCAGGCCGTGG GGCGGGAGCGGCGGACGGCGTTGCATTACGCAGCCGCCAGCGGCAGCGCG GGCGTGGCGCTGGCGTTGCTGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1783:138..1211-

>mRNA_P-wetherbeei_contig1783.1.1 ID=mRNA_P-wetherbeei_contig1783.1.1|Name=mRNA_P-wetherbeei_contig1783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig1783:138..1211- (Phaeothamnion wetherbeei SAG_119_79)
ATCTTTCGCGGCTCGGATGTTGCGACCGAGCTCACGTCCCTCGCGTCGGC
AGTCACGGGAGCCGCCTCCCGCGCCCTCGCCGAAGCAGCCGCCGCCGGCG
ACCGTCTCGCCGCCGGCGCCGCCCTGGACGACGGCGCCGCCATCGACAAG
CCGCTGGGCCGCGGCGGCTACACCCCGTTGATGCGTGCCGCCAGCTTCGG
CCACCGCAAGGTCGCCAAGCTCCTAATCTCCGAGGGGGCCGACCTTTTCG
TTCGCGACCGGCACGGCCGGACTGCGCTCGACTGGGCGCGCGCGTGCGGC
CGTGATGGCGCCACTCGGCTGCTGGAGCGCACCATGGAGAACGACGTTCG
CGCCCACCGCACCGAGTTCCTGCTGCGACGGCGGCGGGACAGCGAGGCGG
CGGTGGCATCGGTCGTCGATCGGCTCCGGCGGGATCTGCGCGCCGCGCTG
GAAGCGCAGGACCTGGCGGCGGTGCTGGCAGTGATCGATGACGCGGCGGC
GGCCGGCCAGCTGCCACCGCCGAAGCGCCGCCGCCGTGCCGCCACGGCCA
CCACCGCCCCCGCTGCTACTGCCACCGCTGCGGCCGTCGGCGATTCCTGT
TCCGTTGCCCCATGTTCCGGTGGTGGAATACTCACATCTGACAATGCAGC
AGGAGCACCAGGGAATCTGTTCATAAATGCCTCGCCGGCGGTTCCAGCGG
CTCCAGCCCCCGCCGCTGCTGCCGCTGCCACCGTTGCCGCTGCCAGCACT
GACCCGCCCGCCGCCTGCCCCTTCGTTGACGTGGAAACCGACAGCGGCGT
CACTGCGCTCATCCTTGCAGTCTTTCGGGACGACGGCGACGCCGCGGCCC
GGCTGCTGGCGGCGGGAGCCGACGCCGCTGTGGTCACCCGCCGCGGCCAC
ACGGCGCTGACGTGGGCCGCCGTCTGCGGGCACGCGGTGGCGGCGCAGGC
GCTGGTCGGCACGCCACTGGGAGAGGCGGCCGATCCAGGGCAGGCCGTGG
GGCGGGAGCGGCGGACGGCGTTGCATTACGCAGCCGCCAGCGGCAGCGCG
GGCGTGGCGCTGGCGTTGCTGGAC
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