mRNA_P-wetherbeei_contig17800.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: UPI001987A92C (Uracil-DNA glycosylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001987A92C) HSP 1 Score: 249 bits (637), Expect = 2.160e-77 Identity = 142/273 (52.01%), Postives = 178/273 (65.20%), Query Frame = 1
Query: 22 MSPGGAQAALAWLIEMGADEIVGEASVNRFAAVVAPPVVAA--PVSKVAPVAAP--------------SSADA-------CNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVAST----SSF--NFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGKKIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEALDAH 753
M+P A ALAWL EMGADEIVGE +++RF A P + P S V P P S A +L ++ AAL L+ PLKKTA+NLCFAD NP+A VM+IG+ PGRDEDI+GK F G++ LL++ML AIGLS + S F N V WRPPGNRT T+AE MC PF+LR +EL +P+ I+CLG PA RL+G+ DG+L +RGKW IGG+ IP+L + HP+YLL+QPGQKRLAWRDLL ++ALDAH
Sbjct: 1 MTPRQAAQALAWLSEMGADEIVGETAIDRFGAQTIPSSSSRRKPGSTVEPEQLPIIPSRGEMGPGLRLPSGQARRWDDGSLGALDDIVAALSVLDSCPLKKTATNLCFADGNPRAHVMLIGEAPGRDEDIQGKPFVGRSGQLLDRMLAAIGLSREAVEPEHSVFISNTVFWRPPGNRTPTEAETAMCLPFLLRTIELLQPRIIVCLGATPAHRLTGRCDGILKMRGKWLKCTIGGRDIPLLPTLHPAYLLRQPGQKRLAWRDLLLLRQALDAH 273
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: A0A2W2AJI3_9HYPH (Type-4 uracil-DNA glycosylase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2AJI3_9HYPH) HSP 1 Score: 243 bits (621), Expect = 3.980e-75 Identity = 131/263 (49.81%), Postives = 167/263 (63.50%), Query Frame = 1
Query: 1 MQTKQNDMSPGGAQAALAWLIEMGADEIVGEASVNRFAAVVAPPVVAAPVSKVAPVAAPSS------ADACNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLS------VASTSSFNFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGKKIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEALDAH 753
M NDM+P A AL WL EMGADEI+GE+ VNR AA P A +L E++ AL + PLKKTA+ LCFAD NP A VM++G+ PGR+EDIEG+ F G++ LL++ML AIGLS ++ N + WRPPGNRT T+AE QMC PF+ R +EL +P I+CLG PA RL+G+SDG+L LRGKW + G+ IP+L + HP+YLL+QP QKRLAWRDLLS ++ LDAH
Sbjct: 1 MDQTPNDMTPHDAAEALRWLSEMGADEIIGESPVNRLAAPAPRPAXXXXXXXXXXXXXXXXXXXXXXAAQYRTLEEIRQALEGFDACPLKKTATKLCFADGNPSARVMLVGEAPGREEDIEGRPFVGRSGQLLDRMLAAIGLSRMAQDRESAVFITNVIFWRPPGNRTPTEAETQMCLPFLTRTIELQKPDVIVCLGATPAHRLTGRSDGILKLRGKWVTANVSGRNIPLLPTLHPAYLLRQPAQKRLAWRDLLSLRQMLDAH 263
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: A0A6G6WVD1_9HYPH (Type-4 uracil-DNA glycosylase n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WVD1_9HYPH) HSP 1 Score: 241 bits (615), Expect = 4.500e-74 Identity = 142/275 (51.64%), Postives = 178/275 (64.73%), Query Frame = 1
Query: 37 AQAALAWLIEMGADEIVGEASVNRFAAVVAPPVVAAPVSK-----------VAPVA-----------APSSADA------CNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVASTSSFNFVP------WRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGKKIPVLASFHPSYLLKQPGQKRLAWRDLLSF--KEALDAH 753
A AA+ WL+EMGADEI+G VNR V+ PP AAP S+ V P A +P ++DA C +LA+++ ALL + PLKKTA+NLCFAD NPQA+VM+IG+ PGRDEDI+GK F G++ LL++ML AIGLS + S N V WRPPGNRT TD E MC PF+ RA+E+ +P+ I+CLG P QRL GKS+G+L LRG+WFD GG IP+LA+ HP+YLL+QP QKRLAW D LS K DAH
Sbjct: 6 AAAAIEWLVEMGADEIIGSTPVNRL--VMPPPAPAAPASRPAGSVLNRPTLVRPAANAPEMRGAAQASPGNSDAAALAAQCATLADIEQALLRFDACPLKKTATNLCFADGNPQAQVMLIGEAPGRDEDIQGKPFVGRSGQLLDRMLTAIGLSRHAESPENSVYISNVIFWRPPGNRTPTDQETLMCLPFLRRAIEIKQPRLIVCLGATPTQRLIGKSEGILKLRGRWFDF--GG--IPLLATLHPAYLLRQPAQKRLAWCDFLSLQQKHKADAH 274
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: UPI001907157B (LysE family translocator n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001907157B) HSP 1 Score: 236 bits (601), Expect = 6.720e-73 Identity = 118/158 (74.68%), Postives = 137/158 (86.71%), Query Frame = 2
Query: 746 MPISSADLLIFLTAALSLNLTPGNDMTYVLGQSLKGGPRTGISASLGIAGGSLIHLGFVALGVAVILAQNPLLFDLIRYAGAAYLVWIAYTTLTSPISALAQESTERSTFAAFRDGVLVNLFNPKIIVFMFAFLPPFIRPENGSPLLQLFILGMIFNV 1219
MPI++ DLL+FLTAAL+LNLTPGNDM YVLGQS+KGG R+GI+AS GIA GS IHL VALG+AV+L Q P +FD IR+AGAAYLVWIAY TLT+PI L E +RS FAA+RDGVLVN+FNPK I+FMFAFLPPFIRPENG+PL+QLFILGMIFN+
Sbjct: 1 MPINTTDLLVFLTAALTLNLTPGNDMMYVLGQSIKGGARSGIAASFGIATGSFIHLVLVALGIAVVLTQYPAIFDAIRWAGAAYLVWIAYKTLTTPIGNLQTEGRQRSLFAAWRDGVLVNVFNPKTIIFMFAFLPPFIRPENGAPLMQLFILGMIFNI 158
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: UPI001907B3A5 (uracil-DNA glycosylase n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001907B3A5) HSP 1 Score: 236 bits (602), Expect = 4.280e-72 Identity = 141/278 (50.72%), Postives = 179/278 (64.39%), Query Frame = 1
Query: 37 AQAALAWLIEMGADEIVGEASVNRFAAVVAPPVVAAPVSKV-----------------APV-----AAPSSA---DA------CNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVASTSS------FNFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGKKIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEAL--DAH 753
A AA+ WL+EMGADEI+G VNR VAPP AAP + AP A P+SA DA C +LA+++ AL+ + PLKKTA+NLCFAD NP A VM+IG+ PGRDEDI+GK F G++ LL++ML AIGL+ + N + WRPPGNRT TD E MC PF+ RA+E+ +P++I+CLG P QRL GKS+G+L LRG+WFD GG IP+LA+ HP+YLL+QP QKRLAWRDLLS ++ L DAH
Sbjct: 6 AAAAIEWLVEMGADEIIGAEPVNRL---VAPPPQAAPAPQXXXXXXXXXXXXXXXXXXAPATDMRAATPASAGNSDAAALAAQCATLADIEQALMRYDACPLKKTATNLCFADGNPDAPVMLIGEAPGRDEDIQGKPFVGRSGQLLDRMLKAIGLARHNEKPEEAVYISNVIFWRPPGNRTPTDQETLMCLPFLKRAIEIKKPRYIVCLGATPTQRLIGKSEGILKLRGRWFDF--GG--IPLLATLHPAYLLRQPAQKRLAWRDLLSLQQKLKADAH 276
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: UPI0019B506E6 (LysE family translocator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019B506E6) HSP 1 Score: 219 bits (557), Expect = 7.860e-66 Identity = 112/158 (70.89%), Postives = 130/158 (82.28%), Query Frame = 2
Query: 746 MPISSADLLIFLTAALSLNLTPGNDMTYVLGQSLKGGPRTGISASLGIAGGSLIHLGFVALGVAVILAQNPLLFDLIRYAGAAYLVWIAYTTLTSPISALAQESTERSTFAAFRDGVLVNLFNPKIIVFMFAFLPPFIRPENGSPLLQLFILGMIFNV 1219
MPI +DL+IF AAL+LNLTPGNDM +VLGQ++KGG R GI+ASLGIA G L+HL VA GVAVILA++P +FD IRYAGAAYLVW+A L P +A +T R +FAA+RDGVLVN+FNPKI+VFMFA LPPFIRPENG PLLQLFILGMIFNV
Sbjct: 1 MPIEWSDLIIFTAAALALNLTPGNDMMFVLGQAIKGGTRAGIAASLGIATGLLVHLALVAAGVAVILAEHPAVFDAIRYAGAAYLVWLAIKILRQPQAAFDANATRRGSFAAWRDGVLVNVFNPKIVVFMFALLPPFIRPENGMPLLQLFILGMIFNV 158
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: A0A8J7SKD3_9PROT (Type-4 uracil-DNA glycosylase n=2 Tax=Marivibrio halodurans TaxID=2039722 RepID=A0A8J7SKD3_9PROT) HSP 1 Score: 211 bits (538), Expect = 2.400e-62 Identity = 127/286 (44.41%), Postives = 165/286 (57.69%), Query Frame = 1
Query: 49 LAWLIEMGADEIVGEASVNRFAAVVA------------------PPVVAAPVS-------------KVAPVAAPSSA-------DACNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVASTSSFNFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGK--KIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEALDAH*FCRSFDFPDG 786
LAW I MGADE G A ++RFAA A PP AP S + AP+ A +A AC +L EL+AAL + + PLK+TA+NL F D NP A+VM+IG+ PGRDED++GK F G + LL++M+G IGL+ N + WRPPGNRT TDAE+ C+PFI R ++L RPK +L +GG A+ L G G+ LRG+WFD GG+ +P LA+FHP+YLL+ P KRLAWRDLLS + + R D DG
Sbjct: 2 LAWQIAMGADEATGTAPLDRFAASEAAAAXXXXPAAATPAPHPSPPXSKAPASPRTPSPTARGQTSEDAPLGAAEAAALGNRAAGACGTLEELRAALESFDGCPLKQTATNLVFGDGNPAADVMLIGEAPGRDEDMQGKPFVGVSGQLLDRMMGFIGLNRERFYITNVLYWRPPGNRTPTDAEVAACRPFIARHIQLVRPKILLLVGGKSAKSLLGTEQGITKLRGRWFDYDAGGEVGTLPALATFHPAYLLRSPAMKRLAWRDLLSLQRRM------RDLDLIDG 281
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: UPI0019C64788 (Uracil-DNA glycosylase n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019C64788) HSP 1 Score: 208 bits (530), Expect = 1.510e-61 Identity = 120/249 (48.19%), Postives = 158/249 (63.45%), Query Frame = 1
Query: 37 AQAALAWLIEMGADEIVGEASVNRFAAVVAP-PVVAAPVSKVA---PVAAP------SSADACNS--LAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVASTSSFNFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGKKIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEALD 747
AQA L W MG DE +GEA V+ FAAVV P P A+ V +A PV+AP SA A N+ LAEL+A + A E LK+TA +LCFA A +M+IG+ PGRDED++GK F G+ LL++ML AIGLS N V WRPPGNRT T E++ C PF+ R +EL P+ ++ LGG A+ + G ++G++ LRGKW + A G+ I L + HP++LL+ P KRLAWRDLL KE L+
Sbjct: 9 AQALLLWYAAMGVDEAIGEAPVDCFAAVVEPSPAPASQVKGIARPLPVSAPLLKTGPGSAAARNAATLAELEALVAAFEGCALKRTAKSLCFARGREDARIMLIGEAPGRDEDLKGKPFVGRAGQLLDRMLAAIGLSENQVYITNTVYWRPPGNRTPTPEEVEACAPFLARQIELLDPQVLVLLGGAAAKNILGMAEGIMRLRGKWLNYACAGRDIATLPTLHPAFLLRNPEHKRLAWRDLLLVKERLE 257
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: X5MGA6_9HYPH (Type-4 uracil-DNA glycosylase n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MGA6_9HYPH) HSP 1 Score: 208 bits (530), Expect = 3.120e-61 Identity = 119/261 (45.59%), Postives = 158/261 (60.54%), Query Frame = 1
Query: 49 LAWLIEMGADEIVGEASVNRFAAVVAP------------PVVAAPVSKVAPVA-----------APSSADACNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVASTSSFNFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDL---AIGG---KKIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEAL 744
L W +E GADE +G+ ++R AAV P P P+ AP A A + A A ++L +L+ A+ PLK TA NL FAD NPQA++M++G+ PGRDEDI+G F G++ LL++ML +IGLS + N +PWRPPGNRT T AE MC PFILR +EL PK ++C+GG A+ L G G+ LRG+W D AIGG + +P +A HP+YLL+QP QKRLAWRDLLS K+ +
Sbjct: 18 LRWFVEAGADEAIGDEPIDRLAAVPEPEPRVSNGGKPPLPGAKQPIRPQAPQAELADDKAAIDDARALAAAASNLDDLRNAMAGFAGCPLKATAKNLVFADGNPQAKIMLVGEAPGRDEDIQGLPFVGRSGQLLDRMLASIGLSRETVYISNVLPWRPPGNRTPTPAETAMCLPFILRHIELVGPKVLVCIGGVSAKELFGTKTGITRLRGQWKDFDPAAIGGPAGQTMPAIAMLHPAYLLRQPAQKRLAWRDLLSLKDKM 278
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Match: A0A2W4MZA2_9PROT (Type-4 uracil-DNA glycosylase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2W4MZA2_9PROT) HSP 1 Score: 208 bits (530), Expect = 3.520e-61 Identity = 124/272 (45.59%), Postives = 157/272 (57.72%), Query Frame = 1
Query: 28 PGGAQAALAWL----IEMGADEIVGEASVNRFAAVVAPPVVAAPVSK--VAPV--------------------------AAPSSADACNSLAELQAALLALEEFPLKKTASNLCFADCNPQAEVMIIGDVPGRDEDIEGKVFAGQNLALLEKMLGAIGLSVASTSSFNFVPWRPPGNRTLTDAEIQMCQPFILRAVELCRPKFILCLGGHPAQRLSGKSDGLLSLRGKWFDLAIGGKKIPVLASFHPSYLLKQPGQKRLAWRDLLSFKEALD 747
PG +AAL L +E G D + E NRFA P A+P V+PV AA ++A A SL EL+ AL A + LK TA NL FAD P A VM++G+ PGR+EDI+GK F G++ LL++ML AIGL +S N VPWRPPGNRT T E +C+PFI R +ELC P ++CLGG AQ L G +G+L RGKWFD G + I LA+ HP+YLL+QP QKRLAWRDL + ++ LD
Sbjct: 8 PGAREAALEALLDFYVEAGVDLAIDETPHNRFAEPDRPQPAASPAGTPAVSPVQRQPAQASSAAAPAFDATASADETALAARATARAATSLEELREALAAFDGCALKATAKNLVFADGTPGARVMLVGEAPGREEDIQGKPFVGRSGQLLDRMLAAIGLDRSSVYIANIVPWRPPGNRTPTPQEAAICRPFIERQIELCDPDVLVCLGGPSAQALLGVREGILRTRGKWFDYDTGRRTIRALATLHPAYLLRQPAQKRLAWRDLRALRKVLD 279 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17800.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17800.1.1 >prot_P-wetherbeei_contig17800.1.1 ID=prot_P-wetherbeei_contig17800.1.1|Name=mRNA_P-wetherbeei_contig17800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp MQTKQNDMSPGGAQAALAWLIEMGADEIVGEASVNRFAAVVAPPVVAAPVback to top mRNA from alignment at P-wetherbeei_contig17800:3..1221- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17800.1.1 ID=mRNA_P-wetherbeei_contig17800.1.1|Name=mRNA_P-wetherbeei_contig17800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-wetherbeei_contig17800:3..1221- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17800:3..1221- >mRNA_P-wetherbeei_contig17800.1.1 ID=mRNA_P-wetherbeei_contig17800.1.1|Name=mRNA_P-wetherbeei_contig17800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig17800:3..1221- (Phaeothamnion wetherbeei SAG_119_79)back to top |