mRNA_P-wetherbeei_contig1776.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1776.1.3
Unique NamemRNA_P-wetherbeei_contig1776.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.290e-54
Identity = 192/722 (26.59%), Postives = 247/722 (34.21%), Query Frame = 1
Query:  157 SAEANPAKAADAAQQVFSDLLAAG-FKPPESAFTALLRACCRDGRLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEVREKARANE-------LDLGEREYLSLIKACTAAKDAAAFEAVMADYREDVLRSRSRESWDTLRAFFEA---------------------------------------------------------------------------------------------VPPAAMXXXXXXXXXXXXXXXS---------------------------------------AEGVXXXXXXXXXXXXSAEMACAAPI---------EVSAIPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCGTVLESIELSPADTERLLLQVESLVCTSDVRTVQWNIFKACLEKKGRSSFDYVVDGANVGYFKKMAAAAGELADHRQIDAVVGQLKARGKRALVVLHSRHLEERSLAPASAAIVKRFDFXXXXXXXXXRGWGIACVRGSGGRPGQGCVLFSWRPRCLSSSAALLCTAWLWRWLLMGFDLLVLLLCEASISSLSHETAKNEHLPPFSARGMRHATGRRDGGRWRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGI---RALVTHEPPLYSKRIQRSPTGAGGAWHFPLEGSEEWLCV 1866
            SA+ N   AA+AA Q+FSD    G    PESA+TA++RACCRDGR DRA                                        +   +        + + EREYL LI ACT A+D   F  VM +Y +DVL+ RSR SWD L+++F+                                                                                               PP+A                S                                       A+G               + A   P          E S   +                            C  CG V+ SIELS  D +RLL Q+E LVCT++ RT QW  F+  LE++G+  ++ ++DGANVGY+K    + GELAD RQ+D  V + +  GK+ LVVLHSRHL E+ L+  +  I KR                                                                                                         W+   ++ SC   +NDDWYWLYAA + GG  LVLTNDEMRDHHFSMLSHRSF RW+ERHQ RF F    G   GG    R ++T EP  YSKR Q+       +WH PLE S +WLC 
Sbjct:  223 SAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKVGPNVIGNGYVKHREVAAATTARTKPEEGEIENPRSGELPDNGGISEGDGGESGQESTATSGAAAAAPTLAGDAAGAPGVGDSAPSLSKAVVATEPPSARPDGSHGTDSALAPASSSXXXXXXXQADGSSGDDATGAAATSPRAAGAYAVGRSFQADGCGGDDAMEDAPQADGDEAVGGPTPVAGEDAVEEASPRADAAGGEKEPPSGGTSGWIVTECYVRKDGTCENCGEVMRSIELSEDDEQRLLKQIEELVCTNEQRTHQWEGFRGWLERRGKQRYNVIIDGANVGYYKA-CLSEGELADLRQVDWAVKKFQDEGKKPLVVLHSRHLVEKRLSDEAKEIYKR---------------------------------------------------------------------------------------------------------WKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKG--EGGDDDEREVITEEPRSYSKRTQKGVD----SWHVPLERSRDWLCA 832          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A7S2SLT1_9STRA (Protein unc-45 homolog B n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLT1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.830e-39
Identity = 155/562 (27.58%), Postives = 209/562 (37.19%), Query Frame = 1
Query:  163 EANPAKAADAAQQVFSDLLAA-GFKPPESAFTALLRACCRDGRLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEVREKARANELDLGEREYLSLIKACTAAKDAAAFEAVMADYREDVLRSRSRESWDTLRAFFEAVPPAAMXXXXXXXXXXXXXXXSAEGVXXXXXXXXXXXXSAEMACAAPIEVSAIPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCGTVLESIELSPADTERLLLQVESLVCTSDVRTVQWNIFKACLEKKGRSSFDYVVDGANVGYFKKMAAAAGELADHRQIDAVVGQLKARGKRALVVLHSRHLEERSLAPASAAIVKRFDFXXXXXXXXXRGWGIACVRGSGGRPGQGCVLFSWRPRCLSSSAALLCTAWLWRWLLMGFDLLVLLLCEASISSLSHETAKNEHLPPFSARGMRHATGRRDGGRWRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGG---AWHFP 1836
            +A P K  + A  ++ D  A+ G    E+A+T+LLR C R G +DR                                     +V  +   ++L LGEREYL L++  T    A    A++    EDVL   +RESW  L  +F + P AA                 AE V             +E++                                               L SI+L   + +R+L QV  L  T      +W  F   LE+KGR++FD +VDGANVGYFK+    A +  ++ QID VV   +A+GKR L+ LH RHL  ++L  +   + KR                                                                                                         W+SE  L +   GSNDDW+WLYAA WL     V+TNDEMRDHHF MLSHRSF RW+ERHQ+ + F  G+     G R ++TH PP YS R+Q S     G   AWH P
Sbjct: 1584 DAAPGKYDEVAFSLYEDAKASSGSGLQEAAYTSLLRICSRRGDVDRTRALLEELRANGDRPRLRTYHPLLEGLVRAGDLDGAFQVHHEMLGDDLLLGEREYLLLLQVATQHGAADRASAILHGLSEDVLLP-TRESWKVLGDWFTS-PYAA-----------------AEWVISPDAPVDPVTGYSELS--------------------------------------------HLTLRSIDLGGEERQRMLEQVSELALTGKDGAAKWAGFTGWLERKGRTAFDVLVDGANVGYFKQNYPGAPKHVNYEQIDCVVRHFQAQGKRVLLFLHQRHLFPQNLPASCVDLTKR---------------------------------------------------------------------------------------------------------WKSEKTLFTTPVGSNDDWFWLYAAVWLEN-VQVVTNDEMRDHHFRMLSHRSFQRWKERHQIHYEFG-GFDSSLRG-RRVITHVPPTYSIRMQASTDPTSGEVTAWHVP 1974          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A7S2SKI7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKI7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.590e-38
Identity = 107/326 (32.82%), Postives = 138/326 (42.33%), Query Frame = 1
Query:  868 LESIELSPADTERLLLQVESLVCTSDVRTVQWNIFKACLEKKGRSSFDYVVDGANVGYFKKMAAAAGELADHRQIDAVVGQLKARGKRALVVLHSRHLEERSLAPASAAIVKRFDFXXXXXXXXXRGWGIACVRGSGGRPGQGCVLFSWRPRCLSSSAALLCTAWLWRWLLMGFDLLVLLLCEASISSLSHETAKNEHLPPFSARGMRHATGRRDGGRWRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGG---AWHFP 1836
            L SI+L   + +R+L QV  L  T      +W  F   LE+KGR++FD +VDGANVGYFK+    A +  ++ QID VV   +A+GKR L+ LH RHL  ++L  +   + KR                                                                                                         W+SE  L +   GSNDDW+WLYAA WL     V+TNDEMRDHHF MLSHRSF RW+ERHQ+ + F  G+     G R ++TH PP YS R+Q S     G   AWH P
Sbjct:   82 LRSIDLGGEERQRMLEQVSELALTGKDGAAKWAGFTGWLERKGRTAFDVLVDGANVGYFKQNYPGAPKHVNYEQIDCVVRHFQAQGKRVLLFLHQRHLFPQNLPASCVDLTKR---------------------------------------------------------------------------------------------------------WKSEKTLFTTPVGSNDDWFWLYAAVWLEN-VQVVTNDEMRDHHFRMLSHRSFQRWKERHQIHYEFG-GFDSSLRG-RRVITHVPPTYSIRMQASTDPTSGEVTAWHVP 299          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A835YSR3_9STRA (Ribonuclease P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.160e-34
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 1561 SNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGGAWHFPLEGSEEWLCVT 1869
            +NDDWYWL+AA  +GGR LV+TNDEMRDHHF MLSHRSF RW+ERHQV F F    G    G R ++  EP  YSKRIQR+   +  AWHFPLEG + WLCVT
Sbjct:    4 NNDDWYWLWAAVRVGGRVLVVTNDEMRDHHFLMLSHRSFQRWKERHQVHFCF----GDWRDGRRQVLVREPRKYSKRIQRASDDS--AWHFPLEGEDRWLCVT 100          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 9.330e-33
Identity = 65/113 (57.52%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 1537 VLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGG---IRALVTHEPPLYSKRIQRSPTGAGGAWHFPLEGSEEWLCV 1866
            ++ SC   +NDDWYWLYAA + GG  LVLTNDEMRDHHFSMLSHRSF RW+ERHQ RF F    G   GG    R ++T EP  YSKR Q+       +WH PLE S +WLC 
Sbjct:    1 MIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKG--EGGDDDAREVITEEPRSYSKRTQKGVD----SWHVPLERSRDWLCA 107          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: F0XWY5_AURAN (Ribonuclease P n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY5_AURAN)

HSP 1 Score: 137 bits (344), Expect = 5.170e-30
Identity = 110/348 (31.61%), Postives = 141/348 (40.52%), Query Frame = 1
Query:  847 CACCGTVLESIELSPADTERLLLQVESLVCTSDV-----------------RTVQWNIFKACLEKKGRSSFDYVVDGANVGYFKKMAAAAGELADHRQIDAVVGQLKARGKRALVVLHSRHLEERSLAPASAAIVKRFDFXXXXXXXXXRGWGIACVRGSGGRPGQGCVLFSWRPRCLSSSAALLCTAWLWRWLLMGFDLLVLLLCEASISSLSHETAKNEHLPPFSARGMRHATGRRDGGRWRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGGA-WHFP 1836
            CA  G  L S++LS A+   LL Q+E LV   D                  R  QW  FKA L K G + +D ++DGANVGY     A A +  D RQ+DAV+ +    G+RALVVLH+RHL++  L                                                                                                 P SAR + HA        WR    L SC   +NDDWYWLYAA   G  +L+++NDEMRDHHF MLS R+F  W+ERH  +F  ++G     GG R +  H+PP +S R QR+  G   A WH P
Sbjct:  349 CAVTGAKLRSLDLSEAERALLLEQIEGLVPAVDAKFEGQSSAQELERLAGRRMAQWRTFKAWLAKAG-APYDCIIDGANVGYHGANYAGAPDAVDFRQVDAVLRKCIDGGRRALVVLHARHLQDDRL-------------------------------------------------------------------------------------------------PASARPVLHA--------WRRSKSLYSCALRNNDDWYWLYAAVAAGPGSLLVSNDEMRDHHFGMLSARAFLVWKERHLAKF--ELGGWRRDGG-RDVTIHDPPPFSVRAQRNDPGEALARWHLP 587          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A7S3YD57_HETAK (Ribonuclease P n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD57_HETAK)

HSP 1 Score: 119 bits (299), Expect = 6.530e-28
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 1519 RWRSEGVLASCERGS-NDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGGA--WHFPLEGSEEWLCV 1866
            RWR+EG L    +G  NDDWYWL+A    GG TL++TND MRDHHF+MLSHRSF RWRERH+  F F    GH     R++   +PP+YS+R+Q+      G+  WH P      WLC+
Sbjct:   20 RWRAEGRLVEVPKGGPNDDWYWLWATLKCGGDTLMITNDLMRDHHFAMLSHRSFLRWRERHKTSFKF----GHGEPYKRSVTLMKPPVYSQRMQKGDQDNEGSSCWHIPDAEVLNWLCI 134          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN)

HSP 1 Score: 128 bits (322), Expect = 2.530e-27
Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 1522 WRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGGAWHFPLEGSEEWLC 1863
            W+   ++ +C  G+NDDWYWLYAA  LGGRTLV+TNDEMRDHHF M+ +RSF RW+ERHQV ++            + +   EP +YS R QR     G  WHFPL  S EWLC
Sbjct:  501 WKERNIMYNCRSGNNDDWYWLYAAVKLGGRTLVVTNDEMRDHHFQMIHNRSFGRWKERHQVHYSIH--------NEKHVKVQEPRVYSARPQR----IGANWHFPLAESSEWLC 602          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A5D6XIS8_9STRA (Ribonuclease P n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIS8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.170e-27
Identity = 61/117 (52.14%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 1519 RWRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGGAWHFP--LEGSEEWLC 1863
            RW + G + +CE G+NDDWYWLYAA  LGGRTL +TNDEMRDHHF M+ +R+F RW+ERH+ R++        +G  +     EP  +S R QRS  G   AWHFP    GSE WLC
Sbjct:  360 RWAASGEMYNCEAGNNDDWYWLYAAVKLGGRTLAVTNDEMRDHHFQMIHNRAFVRWKERHRARYS--------AGAEQPWAVAEPAAFSARPQRSRDGE--AWHFPPAAPGSETWLC 466          
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Match: A0A067BCH7_SAPPC (Ribonuclease P n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BCH7_SAPPC)

HSP 1 Score: 115 bits (287), Expect = 1.060e-26
Identity = 56/115 (48.70%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1522 WRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSHRSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAGGAWHFPLEGSEEWLCV 1866
            W+ +GV+ +C  G+NDDWYWLYAA  LGGRTLV++NDEMRDHHFSM+++  F RW+ERH V       Y   SG        EP +YSKR Q        +WHFP    + WL  
Sbjct:    5 WKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVH------YDKVSG---KFSFDEPSVYSKRSQ----ALAHSWHFPTPNKDAWLVA 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1776.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE7.290e-5426.59Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A7S2SLT1_9STRA5.830e-3927.58Protein unc-45 homolog B n=1 Tax=Rhizochromulina m... [more]
A0A7S2SKI7_9STRA1.590e-3832.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YSR3_9STRA2.160e-3463.11Ribonuclease P n=1 Tax=Tribonema minus TaxID=30337... [more]
D7FNK8_ECTSI9.330e-3357.52PRORP domain-containing protein n=1 Tax=Ectocarpus... [more]
F0XWY5_AURAN5.170e-3031.61Ribonuclease P n=1 Tax=Aureococcus anophagefferens... [more]
A0A7S3YD57_HETAK6.530e-2849.58Ribonuclease P n=1 Tax=Heterosigma akashiwo TaxID=... [more]
A0A2D4BKK1_PYTIN2.530e-2751.75Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A5D6XIS8_9STRA4.170e-2752.14Ribonuclease P n=1 Tax=Pythium brassicum TaxID=148... [more]
A0A067BCH7_SAPPC1.060e-2648.70Ribonuclease P n=1 Tax=Saprolegnia parasitica (str... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1776contigP-wetherbeei_contig1776:100..4178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T008615
PFAMsPPR_long,PRORP
Model size2198
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.43e-51
EggNOG OGsCOG0534@1|root,KOG1347@2759|Eukaryota,1MF35@121069|Pythiales
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-01_005100.1
DescriptionSource PGD
Cds size1599
COG categoryV
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1776.1.3prot_P-wetherbeei_contig1776.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1776 630..3897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.0131001-UTR-P-wetherbeei_contig1776:99..3001683186126.0131001-UTR-P-wetherbeei_contig1776:99..300Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1776 100..300 +
1683186126.0250518-UTR-P-wetherbeei_contig1776:512..6291683186126.0250518-UTR-P-wetherbeei_contig1776:512..629Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1776 513..629 +
1683186126.0966995-UTR-P-wetherbeei_contig1776:3897..41781683186126.0966995-UTR-P-wetherbeei_contig1776:3897..4178Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1776 3898..4178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.035529-CDS-P-wetherbeei_contig1776:629..6611683186126.035529-CDS-P-wetherbeei_contig1776:629..661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1776 630..661 +
1683186126.0456214-CDS-P-wetherbeei_contig1776:931..10581683186126.0456214-CDS-P-wetherbeei_contig1776:931..1058Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1776 932..1058 +
1683186126.0570376-CDS-P-wetherbeei_contig1776:1412..18531683186126.0570376-CDS-P-wetherbeei_contig1776:1412..1853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1776 1413..1853 +
1683186126.0662923-CDS-P-wetherbeei_contig1776:2094..22231683186126.0662923-CDS-P-wetherbeei_contig1776:2094..2223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1776 2095..2223 +
1683186126.0768168-CDS-P-wetherbeei_contig1776:2624..32471683186126.0768168-CDS-P-wetherbeei_contig1776:2624..3247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1776 2625..3247 +
1683186126.087701-CDS-P-wetherbeei_contig1776:3650..38971683186126.087701-CDS-P-wetherbeei_contig1776:3650..3897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1776 3651..3897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1776.1.3

>prot_P-wetherbeei_contig1776.1.3 ID=prot_P-wetherbeei_contig1776.1.3|Name=mRNA_P-wetherbeei_contig1776.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=533bp
MEALGVLPRIRTFSPILAECGAAGRLELALEVREKARANELDLGEREYLS
LIKACTAAKDAAAFEAVMADYREDVLRSRSRESWDTLRAFFEAVPPAAMA
AAAAAAAAVAAAAASAEGVAAAASAEEAPPASAEMACAAPIEVSAIPEKP
AVSEGAAAAVGDAWRVQETTVAADGTCACCGTVLESIELSPADTERLLLQ
VESLVCTSDVRTVQWNIFKACLEKKGRSSFDYVVDGANVGYFKKMAAAAG
ELADHRQIDAVVGQLKARGKRALVVLHSRHLEERSLAPASAAIVKRFDFS
FRFRFRFRRGWGIACVRGSGGRPGQGCVLFSWRPRCLSSSAALLCTAWLW
RWLLMGFDLLVLLLCEASISSLSHETAKNEHLPPFSARGMRHATGRRDGG
RWRSEGVLASCERGSNDDWYWLYAAAWLGGRTLVLTNDEMRDHHFSMLSH
RSFNRWRERHQVRFNFDMGYGHCSGGIRALVTHEPPLYSKRIQRSPTGAG
GAWHFPLEGSEEWLCVTGATSGQEGETGIASG*
back to top

mRNA from alignment at P-wetherbeei_contig1776:100..4178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1776.1.3 ID=mRNA_P-wetherbeei_contig1776.1.3|Name=mRNA_P-wetherbeei_contig1776.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4079bp|location=Sequence derived from alignment at P-wetherbeei_contig1776:100..4178+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGGGCAAAGCCGGCAAAGGCGGCGGTGCTTCAGACGCAGGTAACGG CGGCGGCAGCGGCGGCGGCGGCGGCGACGGCAACGATGACGGTGGCAACG GCGAGGCTGGTGGCGAGGGAAAGGAGTCGCTGTCGGCGGGTGCGCCGAAC CCCGGCTCGGCGGAAGCCAACCCCGCAAAGGCCGCCGATGCGGCGCAACA GGTGCTTCCTACCATTCTACCTGCCCGCCGGTCGCCACCATTGCATATAG TGCTTCCATGCCTAACCGCCTTTCCCAAGAGGGCTCTCTTCCACAATAGG GCATTTTGGATTATATGGTCCCGAACCTTCCTCTCTCCTTGAAAATGTAT TTTCCCTTTTTCTTTTTCTACCATTGGTTGGCCGACGGTTCATTGGTTGA CTGGCGGTGGCAGGTGTTTTCGGACCTGCTAGCGGCGGGGTTCAAACCGC CCGAGTCGGCCTTCACGGCGCTCCTCCGAGCATGCTGTCGCGACGGCCGG CTGGACCGCGCTGAGGAGAAGCTTGCCGAGATGGAGGCCCTCGGCGTCCT GCCCCGCATCAGGTCGGTCGGCATTCGGTTATTCTGATCGATTATTTTGG GTTGGCGGTTCCTGATTCTGTTTCTAATCTGCGTTCGCCTGTGCAGTCAG CTTCTGTTGCGTTTGTGGGTTGCTTGAGTTGAAGGGCATTACGTTCTGCG CCGCGCGACGAAAACACCGACATTGGTTCCTTTTGATGGTAAAGAAGAGC GCGCGCTCTCTCTCTCTCTTTGGCTCCCCCCCACGCCGCCCAATGACGCC ATCTTTCCGTCCCGCCACTATCTGCAAAACAGGACGTTCTCGCCGATCCT CGCCGAGTGCGGGGCGGCAGGCAGGCTGGAGCTGGCGCTGGAGGTCCGGG AGAAGGCGCGGGCGAACGAACTCGACCTCGGGGAGCGGGAGTACCTCAGC CTGATCAAGGTGACGGGTTGTTGCCCGACTGTCTTCGTTTTGTGTCCTGA ATTGTTCCTGTGGCGGCAACCGAGCGTGGGTGACTTGCCGTAATCGGATT AAGGTGATGGAGAAGTGCCCATCGTTCCCTTCTCTTCTTGGCTTTTAGGT CGTTTCCCTGGCGGCATCTAGGCGTAGACGACTTGCCTTGATCGGGGTTT TCACGGCGTTTGTTTCGGTATGCCATGGACGAACCTTGCTTCTATGGTAG CAGCGTCAGCTATTTATCGTATCTTTCTCCCTGTTTCTTCTGATTGCTTA CTCCATTGTTGCTTCTGACAGGATTTTGCCTGTGTTTCTGTCTCGCCTGC TAACTCTGGGCAGGCCTGCACGGCGGCGAAAGACGCGGCTGCTTTTGAGG CCGTCATGGCGGACTACCGCGAGGACGTGCTGCGGTCGCGCAGCCGCGAG AGCTGGGATACCTTACGGGCTTTCTTCGAAGCCGTCCCCCCCGCGGCCAT GGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCTGCATCTG CCGAGGGCGTGGCGGCAGCTGCGTCTGCCGAGGAGGCGCCGCCGGCCTCT GCCGAGATGGCATGTGCGGCGCCCATTGAGGTATCGGCAATTCCGGAGAA GCCGGCGGTTTCAGAGGGCGCGGCGGCGGCGGTCGGCGACGCGTGGCGGG TGCAGGAGACGACGGTCGCGGCGGACGGCACGTGCGCGTGCTGCGGCACG GTCCTCGAGTCGATCGAGCTGTCGCCAGCGGACACGGAGCGGCTGCTGCT GCAGGTTTGTCTCTAGCCGAATAACACAGCCAGCCGTCGTTCATTGTTCG CTGCTCCCCATTTTCGGCGGCAGCGGCGGTCGCAGCCGCCGGCGCGTCTA TTCGCTGCAACGTTTTGCGTTTGCCTAGTCTGTGTCCCATAGCCCGTGTT TGGGCGCCGGCAATGATCGCCAGCAGAGAAAACCTTTCGAGTGGAACTGA TCCCCAAAGGCGATCGCCGCGATGCCCGCGTCTGTTCCGCGCCAGGTGGA GTCGCTGGTGTGTACCAGCGACGTGCGGACAGTGCAGTGGAACATCTTCA AAGCGTGCCTCGAGAAGAAGGGACGCAGCTCTTTCGACTACGTGGTCGAC GGCGCCAACGTCGGGTACTTCAAGGTCAGGTTAAACCAAATAATTGATGG AGAGATGTCTTTCCGAGGATGACTGAAGTTGACTGTTACCAAAGCGGCAA CCTTACCAACGGGAATGTTTCAGGGTTTGCAAAAACTGCGGTTTGCTTCT ATTTCTTTTCCTTCTCCTTAAAGATGTGGTCCAAAGCGCCGTCCCCACCG CCTCCTCCCACCATCACTCCTGCATACCCACCCTGCCCCTACCGCCGTTC ACGCCTCCGCGGTTCCCGTCGCCGCCATTCCCATTTTCCGTGGCCATCGC CGCCGTCGCCGCGACCACCACCGCCACCACCACCGCCACCACCACCACTG TGAACCCCCGCCCGTCCCGCGCTCCAATCGCCGCTTTTGCCGTTACCGCC ACTTTAACGCCTGCGAGGAGAGCAGAAGATGGCCGCCGCGGCAGGGGAGC TGGCAGACCACCGGCAGATCGACGCCGTTGTCGGCCAACTGAAGGCGCGC GGCAAGCGGGCCCTCGTTGTGCTCCACAGCCGTCACCTCGAGGAGCGGAG CCTGGCACCCGCCAGCGCCGCCATTGTCAAGAGGTTCGATTTCAGCTTTC GCTTTCGGTTTCGGTTTCGGCGCGGTTGGGGCATTGCGTGCGTGCGGGGA AGCGGCGGTCGGCCGGGTCAAGGATGTGTGCTGTTCAGTTGGCGGCCCCG CTGCCTCTCCTCTTCTGCCGCTCTGCTTTGCACGGCTTGGCTTTGGCGGT GGCTCTTAATGGGGTTTGATCTTCTCGTGCTCCTGCTCTGCGAGGCCAGC ATTTCGTCCCTCTCCCACGAGACGGCAAAAAATGAACATCTGCCTCCATT CTCTGCGCGCGGCATGCGGCATGCAACGGGCCGGCGAGACGGCGGCAGGT GGCGCAGCGAGGGTGTGCTGGCGTCGTGCGAGCGGGGCAGCAACGACGAC TGGTACTGGCTGTACGCGGCGGCGTGGCTGGGTGGCCGCACCCTCGTGCT CACGAACGACGAGATGCGCGACCACCACTTCAGCATGCTCAGCCACCGGT GCGTGTGCCGCGCCGGTGCTGCCGATGCGCCTACTCTTTCTCAACCCTCC CTGGCGGCGACTGCTACTGCGGCGGTCCTGTACATTCCTTTCGACGGTGG TACACATGCGTCTGGTGGTTATGCGGTCGGTTTGGCGGCGCCTCCTGGAA GAAGCGGCAGGCCAGCGGTTTGAGGCGCCTTTTGGTCACCATATCAAAGT TGATCACTTTGCTGGTGTATGTTCTTTTCGACAGTCAGCTAATGACTATG GACTTATCAGATCGAGCCGGATGGACTGCCGGTATCAAAGTTTTCTTTCA GCATTGCTGATAGATGCTGTACTGCGAGAGGACAGGCAGCGCTGACTTAA CATTACCGGTTCCTGCTCCGGTTCCCTTTGCACGTCCGTGGGGCACTACA GGTCGTTCAACCGCTGGCGGGAGCGGCACCAGGTGCGCTTCAACTTCGAC ATGGGCTACGGCCACTGCAGCGGCGGCATCCGCGCGCTCGTCACGCATGA ACCGCCCCTGTACTCCAAGCGGATCCAGCGGTCACCGACCGGGGCCGGCG GTGCGTGGCACTTCCCGCTGGAGGGCTCGGAGGAGTGGCTGTGCGTCACT GGCGCCACCTCGGGGCAGGAGGGTGAGACTGGCATAGCTTCCGGGTAGTA GGGAGTTTGCAAAACGGGAAGTGATTGGGGCCGAATGGCGTCTTCAATAG TTCGTTATGCGCCCTTGGCTGCGTACAGTTGCGCGGAAGCGGACGAGAAG TACGGGCTAGCGATTGTGCCGTGGGCGGTTGTCTCGTGGAACAACGCCGG TGCGAGACGAGCGCAGATTGTGTTGATGTTAAACTACCCTCTCAATGGAG GGAATCGGCTGCACGCTGAAGGTTGTGGTTGCGGGTTCTTTCTCTGTGGC ATTATTGTCCTAACACGTTGCCTTAGCTA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1776:100..4178+

>mRNA_P-wetherbeei_contig1776.1.3 ID=mRNA_P-wetherbeei_contig1776.1.3|Name=mRNA_P-wetherbeei_contig1776.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1599bp|location=Sequence derived from alignment at P-wetherbeei_contig1776:100..4178+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCCTCGGCGTCCTGCCCCGCATCAGGACGTTCTCGCCGATCCT
CGCCGAGTGCGGGGCGGCAGGCAGGCTGGAGCTGGCGCTGGAGGTCCGGG
AGAAGGCGCGGGCGAACGAACTCGACCTCGGGGAGCGGGAGTACCTCAGC
CTGATCAAGGCCTGCACGGCGGCGAAAGACGCGGCTGCTTTTGAGGCCGT
CATGGCGGACTACCGCGAGGACGTGCTGCGGTCGCGCAGCCGCGAGAGCT
GGGATACCTTACGGGCTTTCTTCGAAGCCGTCCCCCCCGCGGCCATGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCTGCATCTGCCGA
GGGCGTGGCGGCAGCTGCGTCTGCCGAGGAGGCGCCGCCGGCCTCTGCCG
AGATGGCATGTGCGGCGCCCATTGAGGTATCGGCAATTCCGGAGAAGCCG
GCGGTTTCAGAGGGCGCGGCGGCGGCGGTCGGCGACGCGTGGCGGGTGCA
GGAGACGACGGTCGCGGCGGACGGCACGTGCGCGTGCTGCGGCACGGTCC
TCGAGTCGATCGAGCTGTCGCCAGCGGACACGGAGCGGCTGCTGCTGCAG
GTGGAGTCGCTGGTGTGTACCAGCGACGTGCGGACAGTGCAGTGGAACAT
CTTCAAAGCGTGCCTCGAGAAGAAGGGACGCAGCTCTTTCGACTACGTGG
TCGACGGCGCCAACGTCGGGTACTTCAAGAAGATGGCCGCCGCGGCAGGG
GAGCTGGCAGACCACCGGCAGATCGACGCCGTTGTCGGCCAACTGAAGGC
GCGCGGCAAGCGGGCCCTCGTTGTGCTCCACAGCCGTCACCTCGAGGAGC
GGAGCCTGGCACCCGCCAGCGCCGCCATTGTCAAGAGGTTCGATTTCAGC
TTTCGCTTTCGGTTTCGGTTTCGGCGCGGTTGGGGCATTGCGTGCGTGCG
GGGAAGCGGCGGTCGGCCGGGTCAAGGATGTGTGCTGTTCAGTTGGCGGC
CCCGCTGCCTCTCCTCTTCTGCCGCTCTGCTTTGCACGGCTTGGCTTTGG
CGGTGGCTCTTAATGGGGTTTGATCTTCTCGTGCTCCTGCTCTGCGAGGC
CAGCATTTCGTCCCTCTCCCACGAGACGGCAAAAAATGAACATCTGCCTC
CATTCTCTGCGCGCGGCATGCGGCATGCAACGGGCCGGCGAGACGGCGGC
AGGTGGCGCAGCGAGGGTGTGCTGGCGTCGTGCGAGCGGGGCAGCAACGA
CGACTGGTACTGGCTGTACGCGGCGGCGTGGCTGGGTGGCCGCACCCTCG
TGCTCACGAACGACGAGATGCGCGACCACCACTTCAGCATGCTCAGCCAC
CGGTCGTTCAACCGCTGGCGGGAGCGGCACCAGGTGCGCTTCAACTTCGA
CATGGGCTACGGCCACTGCAGCGGCGGCATCCGCGCGCTCGTCACGCATG
AACCGCCCCTGTACTCCAAGCGGATCCAGCGGTCACCGACCGGGGCCGGC
GGTGCGTGGCACTTCCCGCTGGAGGGCTCGGAGGAGTGGCTGTGCGTCAC
TGGCGCCACCTCGGGGCAGGAGGGTGAGACTGGCATAGCTTCCGGGTAG
back to top