mRNA_P-wetherbeei_contig17659.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17659.3.1
Unique NamemRNA_P-wetherbeei_contig17659.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7Z9UCL2_9BACT (Protein translocase subunit SecD n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UCL2_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 6.080e-17
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    7 GKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            G  ++ LGLDLRSGSHIAV+LL +   NG  V I K +Q+++IQVF+KRL+P+G +E+V+TPE  +RLIIEI
Sbjct:    5 GSSKMLLGLDLRSGSHIAVELLPV-GANGQEVLITKEIQDRSIQVFRKRLDPEGNKEVVITPEGLNRLIIEI 75          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7X8XUW2_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XUW2_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 3.570e-16
Identity = 36/70 (51.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   16 RIQLGLDLRSGSHIAVQLLEIKDPN-GATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            +++LGLDLRSGSHI ++LLE+KDP  G  V++++ ++ ++IQVF +RLN  GT EI++ P   DR+I+EI
Sbjct:   34 KLKLGLDLRSGSHITLRLLEVKDPETGEVVRVNEEIRNRSIQVFTRRLNAVGTSEILIAPAGIDRIIVEI 103          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A355TV04_9BACT (Protein translocase subunit SecD n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TV04_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.230e-12
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 KCRIQLGLDLRSGSHIAVQLLEIKDPNGATV-KIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            + +++LGLDLRSG+HIA+QL E++DP    V KID+    ++IQVF KRLN  GT EI++     DR+IIEI
Sbjct:   32 RLKLKLGLDLRSGTHIALQLKEVEDPVTHQVQKIDQETLNRSIQVFTKRLNAIGTSEILIAAAGKDRIIIEI 103          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A1T4X4I9_9BACT (Multifunctional fusion protein n=1 Tax=Prosthecobacter debontii TaxID=48467 RepID=A0A1T4X4I9_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 26/74 (35.14%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 TTGKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            T     I+ G+DL+ GS   VQL   K  +G    ++    +QAI + +KRLNP+GT+++ + P+  DR++I++
Sbjct:   47 TVDSMGIKKGIDLQGGSEFVVQLQPGKADDGTVKPVNPSAVQQAISILEKRLNPEGTKDMTLQPQGDDRILIQM 120          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: UPI00094670AB (protein translocase subunit SecD n=1 Tax=Verrucomicrobium spinosum TaxID=2736 RepID=UPI00094670AB)

HSP 1 Score: 55.5 bits (132), Expect = 3.440e-7
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   19 IQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            I+ G+DL  GS   VQL    D  G  V +     +QAI + +KRLNPDG ++++  P+  DR++I++
Sbjct:   54 IKKGIDLGGGSSFTVQLQPSLDDKGQPVPLSPAAVQQAIGILEKRLNPDGGKDLLTAPQGTDRILIQM 121          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: UPI0001746BF5 (protein translocase subunit SecDF n=1 Tax=Verrucomicrobium spinosum TaxID=2736 RepID=UPI0001746BF5)

HSP 1 Score: 55.5 bits (132), Expect = 3.510e-7
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   19 IQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            I+ G+DL  GS   VQL    D  G  V +     +QAI + +KRLNPDG ++++  P+  DR++I++
Sbjct:   54 IKKGIDLGGGSSFTVQLQPSLDDKGQPVPLSPAAVQQAIGILEKRLNPDGGKDLLTAPQGTDRILIQM 121          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7W7YHQ1_9BACT (Multifunctional fusion protein n=1 Tax=Prosthecobacter dejongeii TaxID=48465 RepID=A0A7W7YHQ1_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 6.570e-7
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 TTGKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            T     I+LG+DL+ GS   V+L   K  +G    +     +QAI + +KRLNP+G +++ + P+  DR++I++
Sbjct:   47 TINSMGIKLGIDLQGGSEFVVRLEPGKSDDGTAKPVTPSSVQQAIAILEKRLNPEGNKDLTMQPQGDDRILIQM 120          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7C2QRL9_9BACT (Protein translocase subunit SecD n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2QRL9_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    7 GKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            G   I+LGLDLR G H+   +LE+ DP     ++     +Q I + +KRLNP GT+EIVV     +R+I+EI
Sbjct:   34 GTIPIKLGLDLRYGIHL---MLEVYDPK--LKQLSSTEMQQIINILEKRLNPTGTQEIVVQQAGNNRIIVEI 100          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A258B0U9_9BACT (Multifunctional fusion protein n=1 Tax=Verrucomicrobia bacterium 12-59-8 TaxID=1970608 RepID=A0A258B0U9_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.680e-6
Identity = 24/68 (35.29%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   19 IQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            +Q G+DL+ GS   V+L   K+ +G+  ++     +QAI + QKRL+P+G +++ + PE  DR++I++
Sbjct:   53 LQKGIDLQGGSEFIVKLEPGKNDDGSAKEVTPSDVQQAIDILQKRLSPNGEKDLTLQPEGHDRIVIQM 120          
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A2E7YT53_9BACT (Multifunctional fusion protein n=2 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E7YT53_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 8.070e-6
Identity = 22/66 (33.33%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   28 GLDLRSGSHIAVQLL-EIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
            G+DL  G+   +Q+  ++ +  G T+++     +QA++  Q RLNPDGT+++++ P+  D +IIE+
Sbjct:  152 GIDLAGGASFTLQVQPKVDEDGGETIEVTSAAIQQAVKTLQGRLNPDGTKDMLIQPQGEDMIIIEM 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7Z9UCL2_9BACT6.080e-1758.33Protein translocase subunit SecD n=1 Tax=Phycispha... [more]
A0A7X8XUW2_9BURK3.570e-1651.43Uncharacterized protein (Fragment) n=1 Tax=Burkhol... [more]
A0A355TV04_9BACT1.230e-1252.78Protein translocase subunit SecD n=1 Tax=bacterium... [more]
A0A1T4X4I9_9BACT1.010e-735.14Multifunctional fusion protein n=1 Tax=Prosthecoba... [more]
UPI00094670AB3.440e-738.24protein translocase subunit SecD n=1 Tax=Verrucomi... [more]
UPI0001746BF53.510e-738.24protein translocase subunit SecDF n=1 Tax=Verrucom... [more]
A0A7W7YHQ1_9BACT6.570e-733.78Multifunctional fusion protein n=1 Tax=Prosthecoba... [more]
A0A7C2QRL9_9BACT1.190e-643.06Protein translocase subunit SecD n=1 Tax=bacterium... [more]
A0A258B0U9_9BACT1.680e-635.29Multifunctional fusion protein n=1 Tax=Verrucomicr... [more]
A0A2E7YT53_9BACT8.070e-633.33Multifunctional fusion protein n=2 Tax=Roseibacill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17659contigP-wetherbeei_contig17659:1134..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog240016.ABIZ01000001_gene5956
Preferred namesecD
PFAMsSecD_SecF,Sec_GG
Model size222
Max annot lvl203494|Verrucomicrobiae
KEGG koko:K12257
KEGG TC2.A.6.4
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.76e-08
EggNOG OGsCOG0341@1|root,COG0342@1|root,COG0341@2|Bacteria,COG0342@2|Bacteria,46SA4@74201|Verrucomicrobia,2ITYV@203494|Verrucomicrobiae
DescriptionPart of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Cds size222
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.4688864-CDS-P-wetherbeei_contig17659:1133..13551683186122.4688864-CDS-P-wetherbeei_contig17659:1133..1355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17659 1134..1355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17659.3.1prot_P-wetherbeei_contig17659.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17659 1134..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17659.3.1

>prot_P-wetherbeei_contig17659.3.1 ID=prot_P-wetherbeei_contig17659.3.1|Name=mRNA_P-wetherbeei_contig17659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
TTGKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQK
RLNPDGTREIVVTPEPPDRLIIEI
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mRNA from alignment at P-wetherbeei_contig17659:1134..1355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17659.3.1 ID=mRNA_P-wetherbeei_contig17659.3.1|Name=mRNA_P-wetherbeei_contig17659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig17659:1134..1355+ (Phaeothamnion wetherbeei SAG_119_79)
ACCACGGGCAAGTGCCGGATCCAACTCGGCCTGGACCTGCGTTCGGGTTC TCATATCGCGGTCCAGCTGCTCGAGATCAAAGACCCGAACGGCGCTACTG TCAAGATCGACAAGCGCGTCCAGGAGCAGGCCATTCAGGTCTTCCAAAAG CGTCTTAATCCAGACGGAACTCGTGAGATCGTGGTCACCCCCGAGCCTCC CGACCGTCTCATCATCGAGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17659:1134..1355+

>mRNA_P-wetherbeei_contig17659.3.1 ID=mRNA_P-wetherbeei_contig17659.3.1|Name=mRNA_P-wetherbeei_contig17659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig17659:1134..1355+ (Phaeothamnion wetherbeei SAG_119_79)
ACCACGGGCAAGTGCCGGATCCAACTCGGCCTGGACCTGCGTTCGGGTTC
TCATATCGCGGTCCAGCTGCTCGAGATCAAAGACCCGAACGGCGCTACTG
TCAAGATCGACAAGCGCGTCCAGGAGCAGGCCATTCAGGTCTTCCAAAAG
CGTCTTAATCCAGACGGAACTCGTGAGATCGTGGTCACCCCCGAGCCTCC
CGACCGTCTCATCATCGAGATC
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