mRNA_P-wetherbeei_contig17659.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7Z9UCL2_9BACT (Protein translocase subunit SecD n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UCL2_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 6.080e-17 Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 7 GKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
G ++ LGLDLRSGSHIAV+LL + NG V I K +Q+++IQVF+KRL+P+G +E+V+TPE +RLIIEI
Sbjct: 5 GSSKMLLGLDLRSGSHIAVELLPV-GANGQEVLITKEIQDRSIQVFRKRLDPEGNKEVVITPEGLNRLIIEI 75
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7X8XUW2_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XUW2_9BURK) HSP 1 Score: 77.0 bits (188), Expect = 3.570e-16 Identity = 36/70 (51.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 16 RIQLGLDLRSGSHIAVQLLEIKDPN-GATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
+++LGLDLRSGSHI ++LLE+KDP G V++++ ++ ++IQVF +RLN GT EI++ P DR+I+EI
Sbjct: 34 KLKLGLDLRSGSHITLRLLEVKDPETGEVVRVNEEIRNRSIQVFTRRLNAVGTSEILIAPAGIDRIIVEI 103
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A355TV04_9BACT (Protein translocase subunit SecD n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TV04_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 1.230e-12 Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 10 KCRIQLGLDLRSGSHIAVQLLEIKDPNGATV-KIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
+ +++LGLDLRSG+HIA+QL E++DP V KID+ ++IQVF KRLN GT EI++ DR+IIEI
Sbjct: 32 RLKLKLGLDLRSGTHIALQLKEVEDPVTHQVQKIDQETLNRSIQVFTKRLNAIGTSEILIAAAGKDRIIIEI 103
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A1T4X4I9_9BACT (Multifunctional fusion protein n=1 Tax=Prosthecobacter debontii TaxID=48467 RepID=A0A1T4X4I9_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7 Identity = 26/74 (35.14%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 1 TTGKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
T I+ G+DL+ GS VQL K +G ++ +QAI + +KRLNP+GT+++ + P+ DR++I++
Sbjct: 47 TVDSMGIKKGIDLQGGSEFVVQLQPGKADDGTVKPVNPSAVQQAISILEKRLNPEGTKDMTLQPQGDDRILIQM 120
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: UPI00094670AB (protein translocase subunit SecD n=1 Tax=Verrucomicrobium spinosum TaxID=2736 RepID=UPI00094670AB) HSP 1 Score: 55.5 bits (132), Expect = 3.440e-7 Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 19 IQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
I+ G+DL GS VQL D G V + +QAI + +KRLNPDG ++++ P+ DR++I++
Sbjct: 54 IKKGIDLGGGSSFTVQLQPSLDDKGQPVPLSPAAVQQAIGILEKRLNPDGGKDLLTAPQGTDRILIQM 121
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: UPI0001746BF5 (protein translocase subunit SecDF n=1 Tax=Verrucomicrobium spinosum TaxID=2736 RepID=UPI0001746BF5) HSP 1 Score: 55.5 bits (132), Expect = 3.510e-7 Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 19 IQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
I+ G+DL GS VQL D G V + +QAI + +KRLNPDG ++++ P+ DR++I++
Sbjct: 54 IKKGIDLGGGSSFTVQLQPSLDDKGQPVPLSPAAVQQAIGILEKRLNPDGGKDLLTAPQGTDRILIQM 121
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7W7YHQ1_9BACT (Multifunctional fusion protein n=1 Tax=Prosthecobacter dejongeii TaxID=48465 RepID=A0A7W7YHQ1_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 6.570e-7 Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 1 TTGKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
T I+LG+DL+ GS V+L K +G + +QAI + +KRLNP+G +++ + P+ DR++I++
Sbjct: 47 TINSMGIKLGIDLQGGSEFVVRLEPGKSDDGTAKPVTPSSVQQAIAILEKRLNPEGNKDLTMQPQGDDRILIQM 120
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A7C2QRL9_9BACT (Protein translocase subunit SecD n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2QRL9_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6 Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 7 GKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
G I+LGLDLR G H+ +LE+ DP ++ +Q I + +KRLNP GT+EIVV +R+I+EI
Sbjct: 34 GTIPIKLGLDLRYGIHL---MLEVYDPK--LKQLSSTEMQQIINILEKRLNPTGTQEIVVQQAGNNRIIVEI 100
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A258B0U9_9BACT (Multifunctional fusion protein n=1 Tax=Verrucomicrobia bacterium 12-59-8 TaxID=1970608 RepID=A0A258B0U9_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 1.680e-6 Identity = 24/68 (35.29%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 19 IQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
+Q G+DL+ GS V+L K+ +G+ ++ +QAI + QKRL+P+G +++ + PE DR++I++
Sbjct: 53 LQKGIDLQGGSEFIVKLEPGKNDDGSAKEVTPSDVQQAIDILQKRLSPNGEKDLTLQPEGHDRIVIQM 120
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Match: A0A2E7YT53_9BACT (Multifunctional fusion protein n=2 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E7YT53_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 8.070e-6 Identity = 22/66 (33.33%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 28 GLDLRSGSHIAVQLL-EIKDPNGATVKIDKRVQEQAIQVFQKRLNPDGTREIVVTPEPPDRLIIEI 222
G+DL G+ +Q+ ++ + G T+++ +QA++ Q RLNPDGT+++++ P+ D +IIE+
Sbjct: 152 GIDLAGGASFTLQVQPKVDEDGGETIEVTSAAIQQAVKTLQGRLNPDGTKDMLIQPQGEDMIIIEM 217 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17659.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17659.3.1 >prot_P-wetherbeei_contig17659.3.1 ID=prot_P-wetherbeei_contig17659.3.1|Name=mRNA_P-wetherbeei_contig17659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp TTGKCRIQLGLDLRSGSHIAVQLLEIKDPNGATVKIDKRVQEQAIQVFQKback to top mRNA from alignment at P-wetherbeei_contig17659:1134..1355+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17659.3.1 ID=mRNA_P-wetherbeei_contig17659.3.1|Name=mRNA_P-wetherbeei_contig17659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig17659:1134..1355+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17659:1134..1355+ >mRNA_P-wetherbeei_contig17659.3.1 ID=mRNA_P-wetherbeei_contig17659.3.1|Name=mRNA_P-wetherbeei_contig17659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig17659:1134..1355+ (Phaeothamnion wetherbeei SAG_119_79)back to top |