mRNA_P-wetherbeei_contig17554.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17554.1.1
Unique NamemRNA_P-wetherbeei_contig17554.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A7S2RVM1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVM1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.700e-24
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   58 PTTAVSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGAST--FSISGNSEPEAT----PRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQ-RTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            P   VS+NA+A GSNQNAGN LTD+PTTRV APPGG+S+  F      EP+A+    P+Q+     P V+                 P        PV  R S+NA+ATGSNQN GNF+T++PTTRVHAPPGG ++I  G
Sbjct:  104 PERKVSSNAYASGSNQNAGNVLTDRPTTRVHAPPGGSSSNIFGTDPVQEPKASWVAPPQQQPVEPTPIVDKTNVVHTAPAPGTKKVEP--------PVDSRVSSNAYATGSNQNCGNFITERPTTRVHAPPGGVSNITFG 235          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A7S2F4N6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2F4N6_9DINO)

HSP 1 Score: 93.6 bits (231), Expect = 2.930e-19
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 1
Query:   67 AVSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPEATPRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            A SAN FA G+NQNAGN LT++ TTR+   PGG S+  + G+ E  A P +    Q  E   A+              P + AA    V   SAN FA+G+NQNAGN LT++ TTR+H  PGG +S+CLG
Sbjct:   24 APSANRFASGANQNAGNVLTERSTTRLHQAPGGNSSLCLGGDVEKPA-PAKAAARQSDENLDASNTAPAQQGNDTIKPPSSGAAAGVGVAAPSANRFASGANQNAGNVLTERSTTRLHQAPGGNSSLCLG 152          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A7S0NNN3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NNN3_MICPS)

HSP 1 Score: 93.6 bits (231), Expect = 2.810e-18
Identity = 54/128 (42.19%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   73 SANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPEATPRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            S+NAFA GS+QN GN +TD+PTTR+ APPGG S+          A P  R       V +           +   V   V       +  S+NAFA G++QN GNF+TD+PTTR+HAPPGG++ I  G
Sbjct:   13 SSNAFANGSDQNCGNVITDRPTTRLHAPPGGHSSICFG------AAPEDR-------VRSTVATAQDKATNSPSAVQSQVFGAPSTARSNSSNAFANGADQNCGNFITDRPTTRLHAPPGGQSQISFG 127          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: D7FW98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW98_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.310e-17
Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = 1
Query:    1 QMWVDVPEDAE-PAPMEDGRPT--TAVSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSI----SGNSEPEATPRQRFPNQKPEVNAAAXXXXXXXXAAN---GYVPVAVAA-----------------------------------NAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            Q W++V    E P+      PT  TA+S+NA+A G NQNAGNFLTDKP TR+ APPGGAS+ S     +G +   A    +  +Q+  V            A +   G  P+ +                                             S+NA+A+GSNQN+GNF+T +PTTRV APPGG +SI  G
Sbjct:    8 QQWIEVDVTEESPSKAAAASPTSSTALSSNAYASGVNQNAGNFLTDKPITRIHAPPGGASSISFGDQHTGPTAAAAGVTTKTQDQQGLVLGTPTQPTTPESAESTEEGPAPIPMMELPPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSNAYASGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 204          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: C1FHE0_MICCC (SAP domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHE0_MICCC)

HSP 1 Score: 92.0 bits (227), Expect = 4.070e-17
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   73 SANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPEATPRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            S+NAFA GS+QN GN +TD+PTTR+ APPGG S+          A P  R       V +           +   V           +  S+NAFA G++QN GNF+TD+PTTR+HAPPGG++ I  G
Sbjct:   13 SSNAFANGSDQNCGNVITDRPTTRLHAPPGGHSSICFG------AAPEDR-------VRSTVATAQDKATNSPSAVXXXXXXXXXXARSNSSNAFANGADQNCGNFITDRPTTRLHAPPGGQSQISFG 127          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A812UW40_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW40_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 1.540e-16
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   52 GRPTTAVSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPEATPRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICL 453
            GRP   V++N++A GSNQN GN ++D P+TRV APPGG S+  +  +  P A P  R P +  + + A           +   P  +A   +P  R S+N++A+G++QN GN LT  PTTRV  PPGG + + L
Sbjct:   12 GRPAR-VTSNSYANGSNQNCGNVISDIPSTRVAAPPGGKSSICLGWDDRPAARPAGRPPAE--DASRAQARPAGEALRRDHRSPEDLAYGTRP--RESSNSYASGNSQNTGNVLTGVPTTRVLRPPGGASEMSL 140          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A7S0X2V9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X2V9_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 1.450e-15
Identity = 54/131 (41.22%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   73 SANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPEATPRQRFPNQKPE---VNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            S+NA+A GS+ N GN +TD+ TTR+ APPGG S      +      P  R   Q+ +   +N  +             VP A  A        S+NAFA GS+QN GNF+TD+PTTR+HAPPGG + I  G
Sbjct:   41 SSNAYANGSDPNCGNVITDRSTTRLHAPPGGHSQICFGADPRDAPQPVARVSTQEHQDYRMNTVSNVTSQVFG-----VPSAAHA-------ASSNAFANGSDQNNGNFITDRPTTRLHAPPGGHSQISFG 159          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: E1Z6N5_CHLVA (SAP domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6N5_CHLVA)

HSP 1 Score: 81.6 bits (200), Expect = 8.630e-15
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   70 VSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGN--SEP-EATPRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            V+ N ++    QN GNF+TD+P++RV APPGGA+ +S +G+  ++P  A P      Q P   AAA         +   +  A    AQ       N +A  S QN GNF+TDKP++RV APPGG +SI  G
Sbjct:   69 VNNNNYSRNEGQNVGNFITDRPSSRVLAPPGGATNWSFAGDVPADPIRAKPAHSPIKQAPMSAAAAEAPGVAEAVSEDLIGAANMGVAQ-------NNYARPSGQNVGNFITDKPSSRVLAPPGGGSSIVFG 193          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A2P6VF38_9CHLO (Cortical microtubule associated SPIRAL1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VF38_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 2.140e-14
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   70 VSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPE-ATPR-QRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPV-------QRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICLG 456
            ++ N ++    QN GNF+TD+P++RV APPGG  ++++SG+   E A PR +++    P+V+ +A              PVA A  A          + T  N ++    QN GNFLTDKP++RV APPGG +SI  G
Sbjct:   80 INDNNYSRSEGQNVGNFITDRPSSRVLAPPGGTMSWNMSGDMPAEPAKPRGKQYGYAPPQVSVSAHA-----------APVAAATAATDFDSDAVRGEPTHNNNYSRAQGQNVGNFLTDKPSSRVLAPPGGGSSIVFG 206          
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Match: A0A812JVB4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812JVB4_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 2.160e-14
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   70 VSANAFAVGSNQNAGNFLTDKPTTRVRAPPGGASTFSISGNSEPEATPRQRFPNQKPEVNAAAXXXXXXXXAANGYVPVAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICL 453
            V++N++A GSNQN GN ++D P+TRV APPGG S+  +  +  P A    R   +     A               VP   A       R S+N++A+G++QN GN LT  PTTRV  PPGG + + L
Sbjct:   17 VTSNSYANGSNQNCGNVISDIPSTRVAAPPGGKSSICLGWDDRPVARAAGRPVEEASRAQAHRPPAGEAVRRDRRSVPEDQAQAYGTRPRESSNSYASGNSQNTGNVLTGVPTTRVSRPPGGASEMSL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17554.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RVM1_9STRA1.700e-2447.86Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2F4N6_9DINO2.930e-1944.62Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0NNN3_MICPS2.810e-1842.19Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
D7FW98_ECTSI2.310e-1735.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
C1FHE0_MICCC4.070e-1741.41SAP domain-containing protein n=1 Tax=Micromonas c... [more]
A0A812UW40_9DINO1.540e-1640.30Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S0X2V9_9CHLO1.450e-1541.22Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
E1Z6N5_CHLVA8.630e-1540.15SAP domain-containing protein n=1 Tax=Chlorella va... [more]
A0A2P6VF38_9CHLO2.140e-1437.68Cortical microtubule associated SPIRAL1 n=1 Tax=Mi... [more]
A0A812JVB4_9DINO2.160e-1438.28Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17554contigP-wetherbeei_contig17554:1..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296587.XP_002508544.1
PFAMsDUF4057,SAP
Model size979
Max annot lvl3041|Chlorophyta
KEGG koko:K18635
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.79e-20
EggNOG OGs2CZE7@1|root,2S9YC@2759|Eukaryota,37XDA@33090|Viridiplantae,34IJ2@3041|Chlorophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_003880.1
Cds size456
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186119.8876102-UTR-P-wetherbeei_contig17554:0..31683186119.8876102-UTR-P-wetherbeei_contig17554:0..3Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17554 1..3 +
1683186119.9040875-UTR-P-wetherbeei_contig17554:459..9791683186119.9040875-UTR-P-wetherbeei_contig17554:459..979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17554 460..979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186119.8963506-CDS-P-wetherbeei_contig17554:3..4591683186119.8963506-CDS-P-wetherbeei_contig17554:3..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17554 4..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17554.1.1prot_P-wetherbeei_contig17554.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17554 4..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17554.1.1

>prot_P-wetherbeei_contig17554.1.1 ID=prot_P-wetherbeei_contig17554.1.1|Name=mRNA_P-wetherbeei_contig17554.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MWVDVPEDAEPAPMEDGRPTTAVSANAFAVGSNQNAGNFLTDKPTTRVRA
PPGGASTFSISGNSEPEATPRQRFPNQKPEVNAAAAAAAAAATAANGYVP
VAVAANAQPVQRTSANAFATGSNQNAGNFLTDKPTTRVHAPPGGRTSICL
G*
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mRNA from alignment at P-wetherbeei_contig17554:1..979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17554.1.1 ID=mRNA_P-wetherbeei_contig17554.1.1|Name=mRNA_P-wetherbeei_contig17554.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=979bp|location=Sequence derived from alignment at P-wetherbeei_contig17554:1..979+ (Phaeothamnion wetherbeei SAG_119_79)
CAAATGTGGGTGGACGTCCCGGAGGACGCCGAGCCCGCGCCGATGGAGGA CGGGCGCCCCACAACCGCCGTATCCGCCAACGCCTTCGCCGTTGGCTCAA ACCAGAATGCCGGCAATTTCTTGACGGATAAGCCGACCACTCGCGTCCGC GCCCCGCCGGGGGGCGCGTCGACCTTCAGCATCAGTGGGAACTCGGAGCC CGAGGCGACGCCACGCCAGCGGTTCCCCAACCAAAAGCCGGAAGTCAACG CCGCCGCAGCGGCTGCGGCGGCTGCGGCGACGGCCGCCAACGGCTACGTG CCGGTCGCGGTCGCCGCGAACGCACAACCGGTGCAGCGTACCTCGGCCAA CGCATTCGCGACGGGCTCTAACCAAAACGCCGGCAACTTCTTGACCGACA AGCCGACCACGCGCGTCCACGCGCCGCCGGGCGGTCGCACCAGCATCTGC CTCGGCTAGGCGACTAGGCGAAGACAGAAGAAGGAAACAGAGCACCGATT GAAATTATGGAAAAGGGATCAAGACAACAGCATGGTCAAGCGACCTGGGG GGGCCGCATCGGGGTCCTTGGAACCGCAGCGGCGGTGCGGAAAGCCCCCC GGGCGTCGGTAGCATCATCGAACGGGCAGCGGCGTGGCAGCAGTAATTTC TAGACCGACGGAGACCAGCGGCAAGCGAAGCGCCTTCTGACTCGGTCGGC CCTTGACCTGGCCGGGCAAGGAGCGGCGGCGCAGAAGGGACCCTGATCTT TGGGAGGAGAGGGGCTTGCTCGGATCGATGGGTTTCAAAGCTTCTTGGGG AAGGGAGGGGCGGCATTTGGGGGCGGAGCAGCGGGATCGGCGGCCGTCAA ACGACGGAACCGCTTTTGGCAACTGCGGAATTCGTTTGCGTGTCCAGGCG GCGGCCTTGTATATCGCCACAAAAGACAGCTTTTCCTCCCTGTGGAAGGG AGGTATTCTCTTCCGAATAAACTAGCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17554:1..979+

>mRNA_P-wetherbeei_contig17554.1.1 ID=mRNA_P-wetherbeei_contig17554.1.1|Name=mRNA_P-wetherbeei_contig17554.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig17554:1..979+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGTGGACGTCCCGGAGGACGCCGAGCCCGCGCCGATGGAGGACGG
GCGCCCCACAACCGCCGTATCCGCCAACGCCTTCGCCGTTGGCTCAAACC
AGAATGCCGGCAATTTCTTGACGGATAAGCCGACCACTCGCGTCCGCGCC
CCGCCGGGGGGCGCGTCGACCTTCAGCATCAGTGGGAACTCGGAGCCCGA
GGCGACGCCACGCCAGCGGTTCCCCAACCAAAAGCCGGAAGTCAACGCCG
CCGCAGCGGCTGCGGCGGCTGCGGCGACGGCCGCCAACGGCTACGTGCCG
GTCGCGGTCGCCGCGAACGCACAACCGGTGCAGCGTACCTCGGCCAACGC
ATTCGCGACGGGCTCTAACCAAAACGCCGGCAACTTCTTGACCGACAAGC
CGACCACGCGCGTCCACGCGCCGCCGGGCGGTCGCACCAGCATCTGCCTC
GGCTAG
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