mRNA_P-wetherbeei_contig17423.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A445MQT3_9DELT (Uncharacterized HTH-type transcriptional regulator y4mF n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445MQT3_9DELT) HSP 1 Score: 55.8 bits (133), Expect = 1.510e-8 Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 49 SGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
SG +G RS RK GL++ A+ G RF+ ELE GK TA + KVLQ L GLGL++ + S E
Sbjct: 8 SGDIGRIIRSKRKRDGLTLAEASALCGVGYRFLSELENGKHTAALGKVLQVLRGLGLEIQIRSRE 72
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI001D18A9C3 (helix-turn-helix transcriptional regulator n=2 Tax=Alcanivorax marinus TaxID=1177169 RepID=UPI001D18A9C3) HSP 1 Score: 54.3 bits (129), Expect = 1.060e-7 Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 43 ELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQL 225
E + +LGA+ R+ARKA+GL+ A+ G PRFV ELE+GKPTAR++ + LGL L
Sbjct: 31 ESASELGARIRAARKAQGLTQVDLAEIAGVGPRFVSELERGKPTARLELTFRITRLLGLDL 91
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A651FR81_9DELT (Transcriptional regulator n=3 Tax=Desulfovibrionales TaxID=213115 RepID=A0A651FR81_9DELT) HSP 1 Score: 53.5 bits (127), Expect = 1.140e-7 Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = 1
Query: 58 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQL 225
LG A RK GL+ A + G RFV ELE+GKPT R+DK LQ L GLGL+L
Sbjct: 11 LGRIAAEKRKLDGLTQADLAGYCGVGERFVGELERGKPTVRLDKALQVLEGLGLEL 66
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI00140CEBFE (helix-turn-helix transcriptional regulator n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI00140CEBFE) HSP 1 Score: 53.9 bits (128), Expect = 1.170e-7 Identity = 31/60 (51.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query: 52 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
G+L A R RK GL A GCS RF+ LE GKPT R+DKVL L LGL L V
Sbjct: 17 GELAAHVRRRRKHLGLRQGELADLAGCSERFIHMLEAGKPTVRLDKVLDVLRVLGLHLEV 76
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A3A4ZJC9_9DELT (Transcriptional regulator n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4ZJC9_9DELT) HSP 1 Score: 53.5 bits (127), Expect = 1.230e-7 Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 58 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
+GA R RK GL++ AA + RF+ LE GKPT RMDKVL L+ LGL LS+
Sbjct: 11 IGAAVRGRRKTDGLTLVEAAGLCNVNYRFLSNLENGKPTVRMDKVLDVLTALGLDLSI 68
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A4Q5XNF7_9DELT (Transcriptional regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XNF7_9DELT) HSP 1 Score: 53.1 bits (126), Expect = 1.910e-7 Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 55 QLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
+LGA R RK GL+ A A+ GC P FV LE+GKP+ R+DK+L L LG+ ++V
Sbjct: 10 RLGAAVRKRRKLLGLTQEAVARAAGCGPVFVYNLERGKPSLRLDKLLGILRVLGMDIAV 68
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI00192EBFED (type II toxin-antitoxin system Y4mF family antitoxin n=1 Tax=Pseudoxanthomonas koreensis TaxID=266061 RepID=UPI00192EBFED) HSP 1 Score: 52.8 bits (125), Expect = 2.460e-7 Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 52 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
G LG R ARKA GL+ A G PRF+ ELE+GK +A + KVL L+ LGL+L + A+
Sbjct: 6 GTLGMAVRQARKAHGLTQAGLAGLAGTGPRFISELERGKASAELGKVLDVLAVLGLRLLLAGAD 69
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A163VI11_9BACT (HTH cro/C1-type domain-containing protein n=3 Tax=Candidatus Fermentibacteria TaxID=1729712 RepID=A0A163VI11_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 2.900e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 43 ELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
E + LG RS RKA G++ A+ LG RF+ ELE+GKPTA + KVLQ + LGL L V
Sbjct: 14 ETTEDLGKMLRSKRKALGMTQERASGLLGVGIRFLSELERGKPTAEIGKVLQVVRRLGLDLCV 76
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A5C5U7U5_9GAMM (Helix-turn-helix transcriptional regulator n=2 Tax=Luteimonas marina TaxID=488485 RepID=A0A5C5U7U5_9GAMM) HSP 1 Score: 52.4 bits (124), Expect = 3.100e-7 Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 52 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
G LGA R ARK GL+ A G PRF+ ELE+GK +A + KVL L+ LGL L + A+
Sbjct: 7 GTLGAAVRQARKTHGLTQAELAGLAGTGPRFISELERGKASAELGKVLDVLAVLGLHLLLTGAD 70
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI000F656E80 (helix-turn-helix transcriptional regulator n=1 Tax=Brevundimonas fluminis TaxID=2487274 RepID=UPI000F656E80) HSP 1 Score: 52.4 bits (124), Expect = 3.410e-7 Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 58 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
LG++ R+ RK GL A G RF+ +LE+GKPT R+DKVL L LGL L V S++
Sbjct: 6 LGSRVRAERKRLGLRQDQLAASAGVGLRFLVDLERGKPTVRLDKVLSVLEALGLTLDVRSSD 67 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17423.1.1 >prot_P-wetherbeei_contig17423.1.1 ID=prot_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp MSRPRPPASLDPNAELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQback to top mRNA from alignment at P-wetherbeei_contig17423:603..845- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17423.1.1 ID=mRNA_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig17423:603..845- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17423:603..845- >mRNA_P-wetherbeei_contig17423.1.1 ID=mRNA_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig17423:603..845- (Phaeothamnion wetherbeei SAG_119_79)back to top |