mRNA_P-wetherbeei_contig17423.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17423.1.1
Unique NamemRNA_P-wetherbeei_contig17423.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A445MQT3_9DELT (Uncharacterized HTH-type transcriptional regulator y4mF n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445MQT3_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-8
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   49 SGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
            SG +G   RS RK  GL++  A+   G   RF+ ELE GK TA + KVLQ L GLGL++ + S E
Sbjct:    8 SGDIGRIIRSKRKRDGLTLAEASALCGVGYRFLSELENGKHTAALGKVLQVLRGLGLEIQIRSRE 72          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI001D18A9C3 (helix-turn-helix transcriptional regulator n=2 Tax=Alcanivorax marinus TaxID=1177169 RepID=UPI001D18A9C3)

HSP 1 Score: 54.3 bits (129), Expect = 1.060e-7
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   43 ELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQL 225
            E + +LGA+ R+ARKA+GL+    A+  G  PRFV ELE+GKPTAR++   +    LGL L
Sbjct:   31 ESASELGARIRAARKAQGLTQVDLAEIAGVGPRFVSELERGKPTARLELTFRITRLLGLDL 91          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A651FR81_9DELT (Transcriptional regulator n=3 Tax=Desulfovibrionales TaxID=213115 RepID=A0A651FR81_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-7
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   58 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQL 225
            LG  A   RK  GL+    A + G   RFV ELE+GKPT R+DK LQ L GLGL+L
Sbjct:   11 LGRIAAEKRKLDGLTQADLAGYCGVGERFVGELERGKPTVRLDKALQVLEGLGLEL 66          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI00140CEBFE (helix-turn-helix transcriptional regulator n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI00140CEBFE)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-7
Identity = 31/60 (51.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query:   52 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
            G+L A  R  RK  GL     A   GCS RF+  LE GKPT R+DKVL  L  LGL L V
Sbjct:   17 GELAAHVRRRRKHLGLRQGELADLAGCSERFIHMLEAGKPTVRLDKVLDVLRVLGLHLEV 76          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A3A4ZJC9_9DELT (Transcriptional regulator n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4ZJC9_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 1.230e-7
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   58 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
            +GA  R  RK  GL++  AA     + RF+  LE GKPT RMDKVL  L+ LGL LS+
Sbjct:   11 IGAAVRGRRKTDGLTLVEAAGLCNVNYRFLSNLENGKPTVRMDKVLDVLTALGLDLSI 68          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A4Q5XNF7_9DELT (Transcriptional regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XNF7_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 1.910e-7
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   55 QLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
            +LGA  R  RK  GL+  A A+  GC P FV  LE+GKP+ R+DK+L  L  LG+ ++V
Sbjct:   10 RLGAAVRKRRKLLGLTQEAVARAAGCGPVFVYNLERGKPSLRLDKLLGILRVLGMDIAV 68          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI00192EBFED (type II toxin-antitoxin system Y4mF family antitoxin n=1 Tax=Pseudoxanthomonas koreensis TaxID=266061 RepID=UPI00192EBFED)

HSP 1 Score: 52.8 bits (125), Expect = 2.460e-7
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   52 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
            G LG   R ARKA GL+    A   G  PRF+ ELE+GK +A + KVL  L+ LGL+L +  A+
Sbjct:    6 GTLGMAVRQARKAHGLTQAGLAGLAGTGPRFISELERGKASAELGKVLDVLAVLGLRLLLAGAD 69          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A163VI11_9BACT (HTH cro/C1-type domain-containing protein n=3 Tax=Candidatus Fermentibacteria TaxID=1729712 RepID=A0A163VI11_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.900e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   43 ELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 231
            E +  LG   RS RKA G++   A+  LG   RF+ ELE+GKPTA + KVLQ +  LGL L V
Sbjct:   14 ETTEDLGKMLRSKRKALGMTQERASGLLGVGIRFLSELERGKPTAEIGKVLQVVRRLGLDLCV 76          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A5C5U7U5_9GAMM (Helix-turn-helix transcriptional regulator n=2 Tax=Luteimonas marina TaxID=488485 RepID=A0A5C5U7U5_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 3.100e-7
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   52 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
            G LGA  R ARK  GL+    A   G  PRF+ ELE+GK +A + KVL  L+ LGL L +  A+
Sbjct:    7 GTLGAAVRQARKTHGLTQAELAGLAGTGPRFISELERGKASAELGKVLDVLAVLGLHLLLTGAD 70          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI000F656E80 (helix-turn-helix transcriptional regulator n=1 Tax=Brevundimonas fluminis TaxID=2487274 RepID=UPI000F656E80)

HSP 1 Score: 52.4 bits (124), Expect = 3.410e-7
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   58 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 243
            LG++ R+ RK  GL     A   G   RF+ +LE+GKPT R+DKVL  L  LGL L V S++
Sbjct:    6 LGSRVRAERKRLGLRQDQLAASAGVGLRFLVDLERGKPTVRLDKVLSVLEALGLTLDVRSSD 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445MQT3_9DELT1.510e-847.69Uncharacterized HTH-type transcriptional regulator... [more]
UPI001D18A9C31.060e-749.18helix-turn-helix transcriptional regulator n=2 Tax... [more]
A0A651FR81_9DELT1.140e-753.57Transcriptional regulator n=3 Tax=Desulfovibrional... [more]
UPI00140CEBFE1.170e-751.67helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A3A4ZJC9_9DELT1.230e-750.00Transcriptional regulator n=1 Tax=Desulfobacterace... [more]
A0A4Q5XNF7_9DELT1.910e-747.46Transcriptional regulator n=1 Tax=Myxococcales bac... [more]
UPI00192EBFED2.460e-746.88type II toxin-antitoxin system Y4mF family antitox... [more]
A0A163VI11_9BACT2.900e-749.21HTH cro/C1-type domain-containing protein n=3 Tax=... [more]
A0A5C5U7U5_9GAMM3.100e-746.88Helix-turn-helix transcriptional regulator n=2 Tax... [more]
UPI000F656E803.410e-746.77helix-turn-helix transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17423contigP-wetherbeei_contig17423:603..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog485915.Dret_1776
PFAMsHTH_3,HTH_31
Model size243
Max annot lvl2|Bacteria
KEGG koko:K07726
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.69e-08
EggNOG OGsCOG2944@1|root,COG2944@2|Bacteria
Descriptionsequence-specific DNA binding
Cds size243
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.0380116-CDS-P-wetherbeei_contig17423:602..8451683186117.0380116-CDS-P-wetherbeei_contig17423:602..845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17423 603..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17423.1.1prot_P-wetherbeei_contig17423.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17423 603..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17423.1.1

>prot_P-wetherbeei_contig17423.1.1 ID=prot_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MSRPRPPASLDPNAELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQ
ELEQGKPTARMDKVLQTLSGLGLQLSVHSAE
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mRNA from alignment at P-wetherbeei_contig17423:603..845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17423.1.1 ID=mRNA_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig17423:603..845- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGCCCGCGCCCACCAGCGTCCCTCGACCCGAACGCCGAGCTTTC CGGGCAGCTCGGCGCGCAGGCACGTTCGGCGCGCAAGGCTAAGGGCCTCT CCATACGGGCTGCCGCACAGCACCTGGGCTGCTCCCCCCGATTCGTCCAG GAACTCGAGCAAGGCAAGCCCACCGCAAGGATGGACAAGGTGTTGCAGAC CCTTTCGGGGCTGGGTTTGCAGCTCAGTGTCCATTCCGCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17423:603..845-

>mRNA_P-wetherbeei_contig17423.1.1 ID=mRNA_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig17423:603..845- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGCCCGCGCCCACCAGCGTCCCTCGACCCGAACGCCGAGCTTTC
CGGGCAGCTCGGCGCGCAGGCACGTTCGGCGCGCAAGGCTAAGGGCCTCT
CCATACGGGCTGCCGCACAGCACCTGGGCTGCTCCCCCCGATTCGTCCAG
GAACTCGAGCAAGGCAAGCCCACCGCAAGGATGGACAAGGTGTTGCAGAC
CCTTTCGGGGCTGGGTTTGCAGCTCAGTGTCCATTCCGCGGAG
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