mRNA_P-wetherbeei_contig17342.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17342.1.1
Unique NamemRNA_P-wetherbeei_contig17342.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: D8LH94_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH94_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.690e-20
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KALAC TGR++VN+PLGRI TNQE MDIVFD RFA+ GEE  P+   F++VIFVMEDV
Sbjct:  297 LLLHGPPGTGKTSMIKALACHTGRNVVNVPLGRIKTNQELMDIVFDQRFAVVGEE-LPVTLGFENVIFVMEDV 368          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A812US84_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812US84_SYMMI)

HSP 1 Score: 82.8 bits (203), Expect = 1.070e-16
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KA+A  TGR++V+IPL RI TNQE MDIVFD  FA+ GE D P+   FK +IFVMEDV
Sbjct:  252 LLLHGPPGTGKTSLIKAMAQHTGRNVVSIPLARIETNQELMDIVFDQSFAVKGE-DMPIKLSFKDIIFVMEDV 323          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A6A3HZB0_9STRA (AAA domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HZB0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.030e-16
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KA+A +TGRHIVNIPLG++ TNQE MD +FD RFA+ G  D P+   FK V+FVMED+
Sbjct:  309 LLLYGPPGTGKTSVIKAVAEKTGRHIVNIPLGKVKTNQELMDAMFDLRFAVDGL-DLPVRMGFKDVVFVMEDI 380          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A7J7PYJ3_9CHLO (AAA domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PYJ3_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 5.760e-16
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   59 LLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LL   P   +TSF+KALAC T R IVNIPL RI TNQ+ MD++FD R  + GE D  +P PF   IFVMEDV
Sbjct:  515 LLHGPPGTGKTSFIKALACHTRRSIVNIPLSRIKTNQQLMDMMFDQRVQVEGE-DMRVPLPFSKTIFVMEDV 585          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A662WW18_9STRA (AAA domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW18_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.750e-16
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KA+A +TGRHIVNIPLG++ TNQE MD +FD R+A+ G  D P+   FK V+FVMED+
Sbjct:  347 LLLYGPPGTGKTSVIKAVAEKTGRHIVNIPLGKVKTNQELMDAMFDLRYAVDGL-DLPVRMGFKDVVFVMEDI 418          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A662WF23_9STRA (AAA domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WF23_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.930e-16
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KA+A +TGRHIVNIPLG++ TNQE MD +FD R+A+ G  D P+   FK V+FVMED+
Sbjct:  349 LLLYGPPGTGKTSVIKAVAEKTGRHIVNIPLGKVKTNQELMDAMFDLRYAVDGL-DLPVRMGFKDVVFVMEDI 420          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: D7FQ72_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ72_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.970e-15
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2
Query:   59 LLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKH--VIFVMEDV 274
            LL   P   +TS +KALACRTGRHI+ +PLGRI TN++ M+I+FD  F +A +E   +P P KH  VI+V EDV
Sbjct:  309 LLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNEDLMNIMFDQSFRVATQE---LPVPLKHENVIYVFEDV 379          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A0M0J9R9_9EUKA (Bcs1 aaa-type n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9R9_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 2.000e-15
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KALA  TGR IVN+PL RISTNQE MDI+FD ++ + G+E  P+   FK VIFVMEDV
Sbjct:  281 LLLHGPPGTGKTSMIKALAQYTGRSIVNVPLARISTNQELMDIMFDQQYLVMGDEV-PIKLGFKDVIFVMEDV 352          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: D7FQ71_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ71_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.270e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 2
Query:   59 LLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKH--VIFVMEDV 274
            LL   P   +TS +KALACRTGRHI+ +PLGRI TN++ M+++FD  F +A +E   +P P KH  VI+V EDV
Sbjct:   97 LLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNEDLMNVMFDQSFRVATQE---LPVPLKHENVIYVFEDV 167          
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Match: A0A813E3X4_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E3X4_POLGL)

HSP 1 Score: 79.3 bits (194), Expect = 2.730e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   56 LLLQTRPPAPRTSFLKALACRTGRHIVNIPLGRISTNQEFMDIVFD*RFAIAGEEDWPMPCPFKHVIFVMEDV 274
            LLL   P   +TS +KA+A  TGR IVN+PL RI TNQE MDI+FD ++ + GEE  P+   FK VIFVMEDV
Sbjct:  325 LLLHGPPGTGKTSLIKAMAQHTGRSIVNVPLARIGTNQELMDIMFDQQYMVEGEEV-PIKLGFKDVIFVMEDV 396          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17342.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH94_ECTSI3.690e-2064.38AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A812US84_SYMMI1.070e-1658.90Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A6A3HZB0_9STRA3.030e-1657.53AAA domain-containing protein n=1 Tax=Phytophthora... [more]
A0A7J7PYJ3_9CHLO5.760e-1658.33AAA domain-containing protein n=1 Tax=Scenedesmus ... [more]
A0A662WW18_9STRA7.750e-1656.16AAA domain-containing protein n=1 Tax=Nothophytoph... [more]
A0A662WF23_9STRA7.930e-1656.16AAA domain-containing protein n=1 Tax=Nothophytoph... [more]
D7FQ72_ECTSI1.970e-1554.05AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0M0J9R9_9EUKA2.000e-1558.90Bcs1 aaa-type n=1 Tax=Chrysochromulina tobinii Tax... [more]
D7FQ71_ECTSI2.270e-1552.70AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A813E3X4_POLGL2.730e-1557.53Hypothetical protein n=3 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17342contigP-wetherbeei_contig17342:333..848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size276
Hectar predicted targeting categorymitochondrion
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.8348267-CDS-P-wetherbeei_contig17342:332..5201683186114.8348267-CDS-P-wetherbeei_contig17342:332..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17342 333..520 -
1683186114.8425236-CDS-P-wetherbeei_contig17342:760..8481683186114.8425236-CDS-P-wetherbeei_contig17342:760..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17342 761..848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17342.1.1prot_P-wetherbeei_contig17342.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17342 333..848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17342.1.1

>prot_P-wetherbeei_contig17342.1.1 ID=prot_P-wetherbeei_contig17342.1.1|Name=mRNA_P-wetherbeei_contig17342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
CCALWTTLRRRAARMPSPATPTNSASCSTDVLPQSSGLPHRPPHRQHPTG
PHLDQPGIYGHCLRLALCHRRRGGLAHALPVQARYLRDGGR*
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mRNA from alignment at P-wetherbeei_contig17342:333..848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17342.1.1 ID=mRNA_P-wetherbeei_contig17342.1.1|Name=mRNA_P-wetherbeei_contig17342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig17342:333..848- (Phaeothamnion wetherbeei SAG_119_79)
TGCTGCGCCTTGTGGACAACTTTGAGAAGAAGAGCGGCAAGAATGCCATC CCCGGCTACTCCTACAAACTCGGCCTCCTGCTCCACGGGTGAGTTGCGTC ATTCGCAGGTAGACTAGCAAGCTGTTCCTGTCTTGGAATCGGGACCGTGT TAGAGTCTTTGCGATGCGAGCGGTCCGTCACATGCTCCTTCTCTGTGGAC TCTGGGCACCTATGGAGGCAAGGAAGCTCTTGCACTTTGGTGCGCCGCAG CAGCTAGTTCTAGGCGCCGCCGCCTTAAAAGCCGTTCATTTCTGTCCTGC TGCCTAAAACCCCCCCGGCATCGGCAAGACGTCCTTCCTCAAAGCTCTGG CCTGCCGCACCGGCCGCCACATCGTCAACATCCCACTGGGCCGCATCTCG ACCAACCAGGAATTTATGGACATTGTCTTCGACTAGCGCTTTGCCATCGC CGGCGAGGAGGACTGGCCCATGCCCTGCCCGTTCAAGCACGTTATCTTCG TGATGGAGGACGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17342:333..848-

>mRNA_P-wetherbeei_contig17342.1.1 ID=mRNA_P-wetherbeei_contig17342.1.1|Name=mRNA_P-wetherbeei_contig17342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig17342:333..848- (Phaeothamnion wetherbeei SAG_119_79)
TGCTGCGCCTTGTGGACAACTTTGAGAAGAAGAGCGGCAAGAATGCCATC
CCCGGCTACTCCTACAAACTCGGCCTCCTGCTCCACGGACGTCCTTCCTC
AAAGCTCTGGCCTGCCGCACCGGCCGCCACATCGTCAACATCCCACTGGG
CCGCATCTCGACCAACCAGGAATTTATGGACATTGTCTTCGACTAGCGCT
TTGCCATCGCCGGCGAGGAGGACTGGCCCATGCCCTGCCCGTTCAAGCAC
GTTATCTTCGTGATGGAGGACGTTGA
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