mRNA_P-wetherbeei_contig1732.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9HNV4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HNV4_FAGSY) HSP 1 Score: 82.8 bits (203), Expect = 1.650e-15 Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQP----AATDA--AGSTWLG----------ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLAL 441
YRS++G+ Y TR D+++ V SL ++ +PTSA+++AAKRVLRY+ GT GLL P TDA A W+ A PTV DNT+A+++A +++H+ + YHF RE V G + V+ + TV Q+A LTK + R L L
Sbjct: 1005 YRSLVGALQYLT-FTRPDLSFAVNSLCQHMHSPTSANLVAAKRVLRYVRGTLSHGLLFQPGPMHLTVFTDADWAEVAWIRMLLRDLHVFLAHCPTVWC-DNTSAISLASNPVFHARTKHVEVDYHFVRERVVRGDLNVQFIPTVDQLADLLTKALPTPRFLQL 1165
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A8J5EUC0_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EUC0_ZINOF) HSP 1 Score: 77.8 bits (190), Expect = 9.000e-14 Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAATDAAGSTWLG-----ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK 411
YR I+GS +Y + TR D+++ V L+RY PTSAH+ AAKR LRY+ GT GL PA D T L A TP +I DN AA+ +A H +++HI + YH RE V I + V T Q A LTK
Sbjct: 786 YRGIVGSLIYLSH-TRPDLSFLVNLLSRYMSQPTSAHLTAAKRALRYVKGTMDLGLFF---PATGDNKSFTNLEGYLDKAATPLMI--DNQAAIAIAKDPTHFSRAKHIKVRYHALREAVKDKEIQLIHVPTKNQKADMLTK 921
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A8J5FA76_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FA76_ZINOF) HSP 1 Score: 76.6 bits (187), Expect = 2.000e-13 Identity = 65/180 (36.11%), Postives = 87/180 (48.33%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAATDA---------AGSTWLGAD------TPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK------------NVGLKRLLALRACTMG 459
YR I+GS +Y + TR D+++ V L+RY PTSAH+ AAKR LRY+ GT GL PA D + S + GA+ TP +I DN AA+ +A H +++HI + YH RE + I + V T Q A LTK +GLK L L A G
Sbjct: 311 YRGIVGSLIYLSH-TRPDLSFLVNLLSRYMSQPTSAHLAAAKRALRYVKGTMDLGLFF---PATGDNESFTNLEGYSDSDYAGAEDAEKAATPLMI--DNQAAIAIAKDPTHFSRAKHIKVRYHALREAIKDKEIQLIHVPTENQKADMLTKVLRKTLFIHHRDRIGLKSLRFLNATKSG 484
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9I1C1_FAGSY (Integrase catalytic domain-containing protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I1C1_FAGSY) HSP 1 Score: 76.6 bits (187), Expect = 2.350e-13 Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 10 IIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQP-----------AATDAAGSTWLGA---------DTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLAL 441
+IG+ Y TR D+++ V SL ++ +PT H++AAKRVLRY+ GT G+L P AA AA W+ +P VI DNT+A+ +A +++H+ + YHF RE V G + V +ST Q+A LTK + R L L
Sbjct: 1229 LIGALQYLT-FTRPDLSFAVNSLCQHMQSPTEGHLVAAKRVLRYVQGTLSHGVLFQPGPRVLTAFTDSDWAAIGAAELAWIRMLLCDFGVILPSPPVIWCDNTSAIALASNPVFHARTKHVEVDYHFVRERVVRGDLRVLFISTNDQLADLLTKALPAPRFLEL 1391
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9IQM4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IQM4_FAGSY) HSP 1 Score: 75.9 bits (185), Expect = 4.250e-13 Identity = 54/166 (32.53%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGT--------PMPGLLNYRQPAATDAAGSTWLG----------ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALR 444
YRS++G+ Y TR D+++ V + +Y + PT+ H+ AAKRVLRY+ GT P + + A +A W+ + TP ++ DN +AL +A +++HI + +HF RE V ++V+ VSTV Q+A TK++ R L LR
Sbjct: 872 YRSMVGALHYLT-FTRPDISFAVHQVCQYMLAPTTTHLAAAKRVLRYIRGTLHHGIEFTPWSSTESEYRALAFASAELCWIRTLLKDLGIFISATP-ILWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLRKDLLVKFVSTVDQLADIFTKSLPTNRFLDLR 1035
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A8J5F6A5_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F6A5_ZINOF) HSP 1 Score: 75.1 bits (183), Expect = 7.790e-13 Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLL-----------NYRQPAATDAAGSTWLG-ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK 411
YR I+GS +Y + TR D+++ V L+RY PTSAH+ AAKR LRY+ GT GL N + +D AG+ A TP +I DN AA+ +A H +++HI + YH RE V I + V T Q A LTK
Sbjct: 590 YRGIVGSLIYLSH-TRPDLSFLVNLLSRYMSQPTSAHLAAAKRALRYVKGTMDLGLFFPPTGDNESFTNLEGYSDSDYAGAEDAKKAATPLMI--DNQAAIAIAKDPTHFSRAKHIKVRYHTLREAVKDKEIQLIHVPTENQKADMLTK 735
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9HGK2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGK2_FAGSY) HSP 1 Score: 73.9 bits (180), Expect = 1.260e-12 Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAATDAAGSTWLGADTPTVIRE-DNTAALTVAMAAGHT---RQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALR 444
Y+ I+G+ Y +TR D+A+ V L ++ +PTSAH +AAKRVL YL GT GL P + S + +D P+ + + +T L + A + Q +HI I YHF E V I ++ +STV Q+A TK + R L LR
Sbjct: 168 YKQIVGTLQYCT-LTRPDIAFSVNQLCQFMHSPTSAHWIAAKRVLSYLKGTIDHGLF---LPTGSLQL-SAYCESDWPSGLDDCRSTGGLCAIILASNPVCHAQMKHIEIDYHFVHEKVVRNGISIKYISTVDQVADIFTKGLTSARFLLLR 314
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: UPI00090154DA (uncharacterized protein LOC109130484 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090154DA) HSP 1 Score: 70.5 bits (171), Expect = 4.070e-12 Identity = 59/164 (35.98%), Postives = 74/164 (45.12%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGL-------LNYRQPAATDAAGS-------------------TWLGADTPTVIREDNTAAL-TVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK 411
YRSI+GS Y A TR D +Y V L++Y +PT H AAKRVLRYL GTP + L+ + D AG +W V+R A + A A R +HI I YHF R +V G + V VST Q+A LTK
Sbjct: 21 YRSIVGSFQYLA-FTRPDNSYAVNRLSQYMHSPTDQHWQAAKRVLRYLKGTPTHVVFLKRHNPLSVHAYSDADWAGDVDDYVSTNAYVTYLGHNPVSWSSKKQTEVLRSSTEAEYRSGANTASELRWMKHIAIDYHFIRTMVQDGALRVVHVSTRDQLADLLTK 183
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9GJW7_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GJW7_FAGSY) HSP 1 Score: 72.0 bits (175), Expect = 9.470e-12 Identity = 50/168 (29.76%), Postives = 79/168 (47.02%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNY----RQPAATDA---------------------AGSTWLG----ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNV 417
Y S IGS MYA TR D+ + V ++RY P AH A KR+LRYL GT L + R +DA +W A+ ++ D+T+AL A + +++HI + YH+ R++V+ G ++++ +ST +A LTK +
Sbjct: 1095 YASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPI 1262
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9IKE8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKE8_FAGSY) HSP 1 Score: 70.9 bits (172), Expect = 2.190e-11 Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 1
Query: 1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAA----TDA-----------AGSTWLGADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALRACTM 456
YR ++G+ Y TR D+++ V + +Y +PTS H+ AAKR+LRYL GT GL P TDA S + + P ++ +N + +A +++HI + ++F RE V + V+ VST+ Q+ TK++ R L LR+C M
Sbjct: 441 YRILVGALHYLT-FTRPDISFAVHQVCQYMASPTSVHLTAAKRILRYLKGTLHLGLSFRPGPLTLSTFTDADWDDDPDDRRSTSSLLVYLEAP-ILWCENISTFAIASNPVFHARTKHIEVDFNFVRERVLRKDLAVKFVSTLDQLVDIFTKSLPAHRFLDLRSCLM 605 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1732.5.1 >prot_P-wetherbeei_contig1732.5.1 ID=prot_P-wetherbeei_contig1732.5.1|Name=mRNA_P-wetherbeei_contig1732.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp MYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNback to top mRNA from alignment at P-wetherbeei_contig1732:6021..6482- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1732.5.1 ID=mRNA_P-wetherbeei_contig1732.5.1|Name=mRNA_P-wetherbeei_contig1732.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig1732:6021..6482- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1732:6021..6482- >mRNA_P-wetherbeei_contig1732.5.1 ID=mRNA_P-wetherbeei_contig1732.5.1|Name=mRNA_P-wetherbeei_contig1732.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1732:6021..6482- (Phaeothamnion wetherbeei SAG_119_79)back to top |